Wall clock time and date at job start Tue Mar 31 2020 13:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00078 * 2 1 4 4 O 1.21280 * 120.00055 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00386 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47676 * 180.02562 * 5 3 2 7 7 C 1.52990 * 109.47336 * 179.97438 * 6 5 3 8 8 N 1.46502 * 109.46969 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99688 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00226 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99858 * 180.02562 * 9 8 7 12 12 C 1.40022 * 120.00176 * 175.49455 * 11 9 8 13 13 C 1.38908 * 120.00352 * 215.12379 * 12 11 9 14 14 C 1.38003 * 120.00179 * 180.02562 * 13 12 11 15 15 C 1.38899 * 119.99996 * 0.02562 * 14 13 12 16 16 O 1.35783 * 119.99801 * 179.97438 * 15 14 13 17 17 C 1.34820 * 117.00252 * 5.33726 * 16 15 14 18 18 H 1.08001 * 119.99593 * 354.96888 * 17 16 15 19 19 C 1.38634 * 120.00020 * 174.96470 * 17 16 15 20 20 N 1.31572 * 119.99774 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99661 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47391 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46866 * 120.00229 * 21 19 17 24 24 H 1.48496 * 109.47183 * 240.00333 * 21 19 17 25 25 C 1.38902 * 120.00661 * 0.26478 * 15 14 13 26 26 C 1.38008 * 119.99473 * 359.45951 * 25 15 14 27 27 H 1.08996 * 109.47050 * 300.00110 * 1 2 3 28 28 H 1.09004 * 109.46906 * 60.00130 * 1 2 3 29 29 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 30 30 H 0.96994 * 120.00317 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.46986 * 59.99718 * 5 3 2 32 32 H 1.09009 * 109.46922 * 300.00281 * 5 3 2 33 33 H 1.09002 * 109.46622 * 59.99701 * 6 5 3 34 34 H 1.09000 * 109.47086 * 300.00310 * 6 5 3 35 35 H 1.09002 * 109.47238 * 60.00410 * 7 6 5 36 36 H 1.09000 * 109.47557 * 300.00353 * 7 6 5 37 37 H 0.96993 * 120.00341 * 0.02562 * 8 7 6 38 38 H 0.96997 * 119.99675 * 355.48546 * 11 9 8 39 39 H 1.07998 * 119.99489 * 359.97438 * 13 12 11 40 40 H 1.08004 * 120.00410 * 179.97438 * 14 13 12 41 41 H 0.97004 * 119.99768 * 179.97438 * 20 19 17 42 42 H 1.07993 * 120.00563 * 179.70790 * 25 15 14 43 43 H 1.08001 * 120.00490 * 180.27632 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1559 2.6097 0.0002 7 6 5.6858 2.6097 0.0002 8 7 6.1741 3.9909 0.0004 9 6 7.4993 4.2372 -0.0001 10 8 8.2894 3.3130 -0.0011 11 7 7.9486 5.5079 0.0005 12 6 9.3217 5.7650 0.0953 13 6 9.7736 6.8770 0.7944 14 6 11.1269 7.1307 0.8874 15 6 12.0372 6.2743 0.2814 16 8 13.3688 6.5241 0.3724 17 6 13.7461 7.5545 1.1558 18 1 12.9994 8.1882 1.6111 19 6 15.0924 7.8003 1.3770 20 7 16.0019 7.0284 0.8220 21 14 15.6150 9.2283 2.4618 22 1 14.4097 9.9376 2.9613 23 1 16.3989 8.7140 3.6135 24 1 16.4519 10.1682 1.6737 25 6 11.5853 5.1655 -0.4228 26 6 10.2322 4.9087 -0.5110 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9500 -0.8400 -0.0004 31 1 4.0089 0.6536 -0.8908 32 1 4.0096 0.6532 0.8892 33 1 3.7929 3.1229 0.8907 34 1 3.7922 3.1242 -0.8893 35 1 6.0492 2.0964 -0.8900 36 1 6.0492 2.0954 0.8899 37 1 5.5439 4.7282 0.0008 38 1 7.3206 6.2443 -0.0648 39 1 9.0657 7.5436 1.2645 40 1 11.4783 7.9955 1.4306 41 1 16.9439 7.2006 0.9764 42 1 12.2929 4.5023 -0.8979 43 1 9.8809 4.0442 -1.0547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056565034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:25 Heat of formation + Delta-G solvation = -98.226335 kcal Electronic energy + Delta-G solvation = -24984.163066 eV Core-core repulsion = 21028.987537 eV Total energy + Delta-G solvation = -3955.175529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59223 -40.69974 -40.41524 -38.37212 -36.65054 -35.56768 -35.38641 -34.18244 -33.53762 -31.83579 -29.81413 -28.66107 -27.31408 -26.37696 -23.92938 -23.34363 -22.66796 -21.91155 -21.28708 -19.99721 -19.23099 -18.97406 -18.40653 -17.86346 -17.15632 -16.84315 -16.52601 -16.33772 -16.20608 -15.98536 -15.54588 -15.43449 -15.34371 -15.02138 -14.54247 -14.48279 -14.21431 -13.98923 -13.57995 -13.29205 -13.27353 -13.19597 -13.05397 -12.92061 -12.69614 -12.45416 -12.41348 -12.06788 -11.85038 -11.34154 -11.31698 -10.97498 -10.92734 -10.53606 -10.11041 -10.06267 -9.81093 -8.55032 -8.42982 -6.10339 0.55796 0.61807 1.38260 1.46223 1.56823 1.63302 1.66006 2.12594 2.21071 2.35984 2.86772 3.18967 3.28221 3.55774 3.73101 4.04784 4.05996 4.08636 4.17609 4.31187 4.51888 4.53394 4.57412 4.61898 4.64852 4.71591 4.78013 4.81198 4.95785 5.09004 5.16713 5.21235 5.24875 5.34105 5.46488 5.47631 5.50971 5.62487 5.72244 6.02799 6.06763 6.23002 6.57552 7.01314 7.06763 7.29196 7.56456 7.82822 8.80531 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.049211 B = 0.001611 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.838116 B =17375.055298 C =17651.005505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.728 5.728 3 C 0.506 3.494 4 O -0.590 6.590 5 C -0.132 4.132 6 C -0.105 4.105 7 C 0.139 3.861 8 N -0.729 5.729 9 C 0.696 3.304 10 O -0.620 6.620 11 N -0.664 5.664 12 C 0.081 3.919 13 C -0.081 4.081 14 C -0.219 4.219 15 C 0.106 3.894 16 O -0.233 6.233 17 C -0.412 4.412 18 H 0.107 0.893 19 C -0.025 4.025 20 N -0.923 5.923 21 Si 1.020 2.980 22 H -0.248 1.248 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.189 4.189 26 C -0.073 4.073 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.420 0.580 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.413 0.587 38 H 0.422 0.578 39 H 0.158 0.842 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.112 0.888 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.348 -11.094 -0.574 33.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.380 5.380 3 C 0.294 3.706 4 O -0.470 6.470 5 C -0.173 4.173 6 C -0.143 4.143 7 C 0.016 3.984 8 N -0.385 5.385 9 C 0.396 3.604 10 O -0.500 6.500 11 N -0.313 5.313 12 C -0.013 4.013 13 C -0.101 4.101 14 C -0.239 4.239 15 C 0.055 3.945 16 O -0.140 6.140 17 C -0.488 4.488 18 H 0.124 0.876 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.840 3.160 22 H -0.171 1.171 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.209 4.209 26 C -0.094 4.094 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.257 0.743 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.260 0.740 39 H 0.175 0.825 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.130 0.870 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -30.777 -11.372 -0.682 32.818 hybrid contribution 0.318 0.682 0.233 0.788 sum -30.460 -10.690 -0.449 32.284 Atomic orbital electron populations 1.21631 0.79404 1.04014 1.01178 1.45820 1.08225 1.09070 1.74870 1.21213 0.91398 0.83409 0.74623 1.90705 1.71711 1.33096 1.51502 1.21567 0.89749 0.98720 1.07215 1.21379 0.92178 0.96908 1.03836 1.21254 0.93677 0.81171 1.02345 1.44944 1.03928 1.10333 1.79340 1.16136 0.83397 0.82989 0.77838 1.90912 1.55837 1.44502 1.58725 1.42109 1.05433 1.07045 1.76761 1.17147 0.82678 0.98467 1.03023 1.20801 0.94550 0.97537 0.97247 1.21104 0.93260 1.02490 1.07046 1.19863 0.84647 0.94471 0.95506 1.83960 1.18941 1.49285 1.61817 1.21915 0.93256 1.06414 1.27177 0.87626 1.26615 0.94289 1.02038 0.99288 1.70216 1.01588 1.40072 1.44264 0.84503 0.79092 0.75649 0.76790 1.17076 1.19647 1.19463 1.20263 0.96022 0.98232 1.06357 1.20874 0.90834 0.99390 0.98261 0.93465 0.93446 0.87403 0.74328 0.86122 0.86221 0.91060 0.90940 0.91591 0.91827 0.75073 0.74024 0.82475 0.85039 0.91957 0.87037 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.70 127.77 1.37 1.91 16 2 N -0.73 -4.90 5.71 -484.52 -2.77 -7.67 16 3 C 0.51 6.37 7.83 87.66 0.69 7.06 16 4 O -0.59 -13.15 15.98 -3.03 -0.05 -13.19 16 5 C -0.13 -0.89 5.70 29.85 0.17 -0.72 16 6 C -0.10 -1.12 4.62 30.59 0.14 -0.97 16 7 C 0.14 2.01 5.67 86.38 0.49 2.50 16 8 N -0.73 -12.44 5.56 -478.53 -2.66 -15.10 16 9 C 0.70 18.60 8.41 179.05 1.51 20.10 16 10 O -0.62 -22.48 13.78 -3.98 -0.05 -22.54 16 11 N -0.66 -16.40 5.34 -317.04 -1.69 -18.09 16 12 C 0.08 2.77 6.30 38.16 0.24 3.01 16 13 C -0.08 -2.73 9.96 22.37 0.22 -2.50 16 14 C -0.22 -9.43 9.16 22.37 0.20 -9.22 16 15 C 0.11 5.42 6.65 22.59 0.15 5.57 16 16 O -0.23 -14.32 9.76 -23.01 -0.22 -14.55 16 17 C -0.41 -24.04 9.48 67.91 0.64 -23.39 16 18 H 0.11 5.56 5.20 -2.91 -0.02 5.55 16 19 C -0.03 -1.44 5.49 84.83 0.47 -0.98 16 20 N -0.92 -57.43 13.67 21.61 0.30 -57.14 16 21 Si 1.02 42.94 29.55 68.60 2.03 44.97 16 22 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 C -0.19 -8.82 9.99 22.37 0.22 -8.59 16 26 C -0.07 -2.95 8.69 22.38 0.19 -2.75 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.42 -0.07 8.83 -92.71 -0.82 -0.89 16 31 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16 34 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.41 4.47 8.49 -92.71 -0.79 3.68 16 38 H 0.42 6.66 8.84 -92.71 -0.82 5.84 16 39 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 40 H 0.13 5.57 5.63 -2.91 -0.02 5.56 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 43 H 0.13 5.32 6.23 -2.91 -0.02 5.30 16 Total: -1.00 -87.89 370.16 0.23 -87.65 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -1.35 Total: 24.64 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 6.71 Total: -8.99 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -6.83 Total: -97.99 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.33 Total: -50.28 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -87.89 0.23 -87.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056565034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.572 kcal (2) G-P(sol) polarization free energy of solvation -87.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds