Wall clock time and date at job start Tue Mar 31 2020 13:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34637 * 117.00080 * 2 1 4 4 O 1.21510 * 120.00139 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99794 * 179.97438 * 3 2 1 6 6 C 1.46504 * 120.00307 * 359.97438 * 5 3 2 7 7 C 1.46506 * 120.00316 * 179.97438 * 5 3 2 8 8 C 1.50704 * 109.47053 * 89.99852 * 7 5 3 9 9 O 1.21276 * 119.99887 * 0.02562 * 8 7 5 10 10 N 1.34772 * 119.99602 * 180.02562 * 8 7 5 11 11 C 1.46502 * 120.00389 * 359.97438 * 10 8 7 12 12 C 1.50703 * 109.47289 * 252.74606 * 11 10 8 13 13 H 1.07998 * 119.99853 * 234.30723 * 12 11 10 14 14 C 1.37872 * 120.00058 * 54.30682 * 12 11 10 15 15 N 1.31519 * 120.00158 * 4.82496 * 14 12 11 16 16 Si 1.86802 * 120.00247 * 184.82786 * 14 12 11 17 17 H 1.48500 * 109.46917 * 59.99797 * 16 14 12 18 18 H 1.48493 * 109.47178 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47040 * 300.00407 * 16 14 12 20 20 C 1.46499 * 119.99886 * 180.02562 * 10 8 7 21 21 C 1.50701 * 109.47214 * 274.72428 * 20 10 8 22 22 C 1.38677 * 120.41514 * 274.86149 * 21 20 10 23 23 C 1.38627 * 118.41998 * 179.77821 * 22 21 20 24 24 C 1.38231 * 119.16103 * 0.51547 * 23 22 21 25 25 N 1.31854 * 120.76197 * 359.72566 * 24 23 22 26 26 C 1.31884 * 121.72614 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47262 * 300.00610 * 1 2 3 28 28 H 1.09001 * 109.46657 * 60.00148 * 1 2 3 29 29 H 1.08998 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47434 * 270.00258 * 6 5 3 31 31 H 1.09002 * 109.46495 * 30.00332 * 6 5 3 32 32 H 1.09003 * 109.46920 * 149.99698 * 6 5 3 33 33 H 1.09006 * 109.46626 * 330.00485 * 7 5 3 34 34 H 1.08998 * 109.47558 * 210.00580 * 7 5 3 35 35 H 1.08996 * 109.46947 * 132.74350 * 11 10 8 36 36 H 1.09000 * 109.46683 * 12.74577 * 11 10 8 37 37 H 0.96996 * 120.00257 * 174.99783 * 15 14 12 38 38 H 1.09004 * 109.47314 * 34.71963 * 20 10 8 39 39 H 1.09001 * 109.47697 * 154.72000 * 20 10 8 40 40 H 1.08004 * 120.79140 * 0.02562 * 22 21 20 41 41 H 1.07996 * 120.41942 * 180.22149 * 23 22 21 42 42 H 1.07993 * 119.61851 * 179.74633 * 24 23 22 43 43 H 1.08006 * 119.61817 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2071 0.0414 0.0017 7 6 4.0744 2.5754 0.0000 8 6 4.3019 3.0239 1.4206 9 8 3.9440 2.3221 2.3427 10 7 4.9030 4.2048 1.6663 11 6 5.3358 5.0523 0.5524 12 6 6.8385 5.0129 0.4455 13 1 7.4046 5.9326 0.4518 14 6 7.4905 3.8027 0.3397 15 7 6.7980 2.6894 0.2364 16 14 9.3576 3.7442 0.3431 17 1 9.8685 4.3171 1.6143 18 1 9.8090 2.3350 0.2190 19 1 9.8797 4.5343 -0.8009 20 6 5.1246 4.6406 3.0473 21 6 3.8887 5.3341 3.5598 22 6 3.6877 6.6838 3.3130 23 6 2.5341 7.2789 3.7997 24 6 1.6341 6.5150 4.5189 25 7 1.8605 5.2347 4.7387 26 6 2.9440 4.6344 4.2859 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.4045 -0.2627 1.0295 31 1 3.6587 -0.7483 -0.5120 32 1 5.1516 0.2211 -0.5120 33 1 3.4465 3.3029 -0.5146 34 1 5.0325 2.4948 -0.5135 35 1 5.0108 6.0777 0.7285 36 1 4.8958 4.6859 -0.3751 37 1 7.2544 1.8462 0.0892 38 1 5.3400 3.7736 3.6718 39 1 5.9681 5.3303 3.0798 40 1 4.4107 7.2569 2.7515 41 1 2.3432 8.3271 3.6233 42 1 0.7350 6.9719 4.9050 43 1 3.0950 3.5837 4.4855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063484975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:45 Heat of formation + Delta-G solvation = -62.217899 kcal Electronic energy + Delta-G solvation = -28431.701287 eV Core-core repulsion = 24478.087202 eV Total energy + Delta-G solvation = -3953.614086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10455 -39.79827 -38.45932 -36.24026 -35.12486 -34.68445 -33.04570 -31.82765 -31.14475 -28.57790 -27.67058 -27.34685 -26.00946 -24.72462 -23.27662 -22.79341 -21.79016 -20.37485 -18.32520 -17.53353 -16.93560 -16.72777 -16.63422 -16.14480 -15.94617 -15.47107 -15.27248 -14.84326 -14.69244 -14.05745 -13.73612 -13.60789 -13.46878 -13.13787 -12.77819 -12.69495 -12.48503 -12.43576 -12.14541 -11.98504 -11.80537 -11.71886 -11.36244 -11.23991 -11.04239 -10.85545 -10.67619 -10.43804 -10.03452 -9.97837 -9.94458 -9.46127 -9.12772 -9.03102 -8.84567 -8.62731 -7.92000 -7.40363 -6.33669 -4.51666 1.47402 1.65394 2.63755 3.12336 3.20029 3.21941 3.34194 3.95363 4.06094 4.15629 4.36477 4.60077 4.82082 5.02340 5.14046 5.32889 5.33985 5.38147 5.40514 5.49294 5.60378 5.71222 5.75241 5.92127 6.00570 6.11422 6.16137 6.29277 6.31892 6.41311 6.48212 6.56724 6.61142 6.74366 6.79761 6.90753 7.03753 7.10586 7.51545 7.71224 7.88710 7.93962 8.34509 8.53300 8.72238 8.80998 9.21849 9.48485 10.64074 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.007701 B = 0.007098 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.122204 B = 3943.993256 C = 6963.923301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.374 6.374 3 C 0.646 3.354 4 O -0.580 6.580 5 N -0.569 5.569 6 C 0.095 3.905 7 C 0.102 3.898 8 C 0.539 3.461 9 O -0.582 6.582 10 N -0.577 5.577 11 C 0.226 3.774 12 C -0.536 4.536 13 H 0.063 0.937 14 C 0.079 3.921 15 N -0.883 5.883 16 Si 0.903 3.097 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.169 3.831 21 C -0.140 4.140 22 C -0.064 4.064 23 C -0.181 4.181 24 C 0.085 3.915 25 N -0.492 5.492 26 C 0.121 3.879 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.174 0.826 35 H 0.024 0.976 36 H 0.042 0.958 37 H 0.269 0.731 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.277 0.025 0.043 5.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.288 6.288 3 C 0.400 3.600 4 O -0.470 6.470 5 N -0.307 5.307 6 C -0.048 4.048 7 C -0.021 4.021 8 C 0.328 3.672 9 O -0.464 6.464 10 N -0.307 5.307 11 C 0.106 3.894 12 C -0.575 4.575 13 H 0.081 0.919 14 C -0.124 4.124 15 N -0.522 5.522 16 Si 0.730 3.270 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C 0.044 3.956 21 C -0.143 4.143 22 C -0.091 4.091 23 C -0.201 4.201 24 C -0.073 4.073 25 N -0.201 5.201 26 C -0.036 4.036 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.190 0.810 35 H 0.043 0.957 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.165 0.835 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.274 -0.731 1.005 6.396 hybrid contribution 1.545 0.514 -0.486 1.700 sum -4.729 -0.217 0.519 4.762 Atomic orbital electron populations 1.23068 0.75530 1.02712 1.02411 1.86223 1.23342 1.31757 1.87475 1.18134 0.83644 0.81738 0.76462 1.90945 1.64464 1.34921 1.56691 1.46341 1.01395 1.08666 1.74269 1.21669 0.95839 0.85105 1.02154 1.22441 1.01370 0.81817 0.96502 1.20523 0.75233 0.80428 0.91054 1.90511 1.54028 1.55219 1.46639 1.48252 1.57272 1.19731 1.05477 1.19384 0.94883 0.89414 0.85698 1.21547 0.92049 0.93073 1.50782 0.91883 1.24968 0.98966 0.95317 0.93192 1.69344 1.35521 0.98945 1.48346 0.86480 0.84529 0.77224 0.78742 1.20173 1.21082 1.20152 1.19882 0.92259 0.98571 0.84847 1.21604 0.99742 0.94663 0.98293 1.21545 0.96786 0.94476 0.96284 1.22049 0.95999 1.01165 1.00916 1.22649 0.98561 0.90094 0.95952 1.67689 1.20665 1.11029 1.20686 1.22828 0.88294 1.00046 0.92470 0.92166 0.92296 0.88538 0.92662 0.91656 0.90331 0.89844 0.80990 0.95749 0.93960 0.92023 0.90649 0.89549 0.84905 0.85355 0.83520 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.56 101.05 1.07 1.83 16 2 O -0.37 -6.53 9.39 -40.32 -0.38 -6.91 16 3 C 0.65 13.47 8.39 54.05 0.45 13.93 16 4 O -0.58 -13.65 15.71 -19.28 -0.30 -13.95 16 5 N -0.57 -11.51 2.36 -188.79 -0.45 -11.96 16 6 C 0.10 1.60 10.49 59.85 0.63 2.23 16 7 C 0.10 2.21 4.04 -5.19 -0.02 2.19 16 8 C 0.54 12.62 6.41 -10.99 -0.07 12.55 16 9 O -0.58 -14.84 15.53 5.56 0.09 -14.75 16 10 N -0.58 -12.64 2.11 -176.43 -0.37 -13.02 16 11 C 0.23 4.87 5.66 -5.19 -0.03 4.84 16 12 C -0.54 -12.28 9.11 -34.44 -0.31 -12.59 16 13 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 14 C 0.08 1.81 5.33 -17.82 -0.10 1.72 16 15 N -0.88 -20.43 8.27 55.43 0.46 -19.97 16 16 Si 0.90 18.65 29.54 -169.99 -5.02 13.63 16 17 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.29 -5.97 7.11 56.52 0.40 -5.56 16 19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 20 C 0.17 3.37 5.43 -5.19 -0.03 3.34 16 21 C -0.14 -2.58 5.44 -104.48 -0.57 -3.15 16 22 C -0.06 -1.03 9.88 -39.28 -0.39 -1.42 16 23 C -0.18 -2.59 10.11 -39.44 -0.40 -2.99 16 24 C 0.08 1.30 11.18 -17.54 -0.20 1.11 16 25 N -0.49 -9.16 10.36 -13.25 -0.14 -9.29 16 26 C 0.12 2.34 10.67 -17.55 -0.19 2.16 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.94 7.37 -51.93 -0.38 0.56 16 32 H 0.08 1.25 7.89 -51.93 -0.41 0.84 16 33 H 0.08 1.83 6.83 -51.93 -0.35 1.48 16 34 H 0.17 3.77 4.71 -51.93 -0.24 3.53 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.93 5.92 -51.93 -0.31 0.62 16 37 H 0.27 6.07 8.32 -40.82 -0.34 5.73 16 38 H 0.08 1.58 7.49 -51.93 -0.39 1.19 16 39 H 0.09 1.64 7.79 -51.93 -0.40 1.23 16 40 H 0.13 1.92 8.06 -52.48 -0.42 1.49 16 41 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.16 3.18 7.68 -52.48 -0.40 2.77 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -30.06 363.98 -6.60 -36.66 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.82 Total: 8.34 kcal Atomic # 6 Polarization: 25.89 SS G_CDS: -0.15 Total: 25.74 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.50 Total: -54.24 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.60 Total: -35.61 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.06 -6.60 -36.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063484975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.557 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds