Wall clock time and date at job start Tue Mar 31 2020 13:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34637 * 117.00080 * 2 1 4 4 O 1.21510 * 120.00139 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99794 * 179.97438 * 3 2 1 6 6 C 1.46504 * 120.00307 * 359.97438 * 5 3 2 7 7 C 1.46506 * 120.00316 * 179.97438 * 5 3 2 8 8 C 1.50704 * 109.47053 * 89.99852 * 7 5 3 9 9 O 1.21276 * 119.99887 * 0.02562 * 8 7 5 10 10 N 1.34772 * 119.99602 * 180.02562 * 8 7 5 11 11 C 1.46502 * 120.00389 * 359.97438 * 10 8 7 12 12 C 1.50703 * 109.47289 * 252.74606 * 11 10 8 13 13 H 1.07998 * 119.99853 * 234.30723 * 12 11 10 14 14 C 1.37872 * 120.00058 * 54.30682 * 12 11 10 15 15 N 1.31519 * 120.00158 * 4.82496 * 14 12 11 16 16 Si 1.86802 * 120.00247 * 184.82786 * 14 12 11 17 17 H 1.48500 * 109.46917 * 59.99797 * 16 14 12 18 18 H 1.48493 * 109.47178 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47040 * 300.00407 * 16 14 12 20 20 C 1.46499 * 119.99886 * 180.02562 * 10 8 7 21 21 C 1.50701 * 109.47214 * 274.72428 * 20 10 8 22 22 C 1.38677 * 120.41514 * 274.86149 * 21 20 10 23 23 C 1.38627 * 118.41998 * 179.77821 * 22 21 20 24 24 C 1.38231 * 119.16103 * 0.51547 * 23 22 21 25 25 N 1.31854 * 120.76197 * 359.72566 * 24 23 22 26 26 C 1.31884 * 121.72614 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47262 * 300.00610 * 1 2 3 28 28 H 1.09001 * 109.46657 * 60.00148 * 1 2 3 29 29 H 1.08998 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47434 * 270.00258 * 6 5 3 31 31 H 1.09002 * 109.46495 * 30.00332 * 6 5 3 32 32 H 1.09003 * 109.46920 * 149.99698 * 6 5 3 33 33 H 1.09006 * 109.46626 * 330.00485 * 7 5 3 34 34 H 1.08998 * 109.47558 * 210.00580 * 7 5 3 35 35 H 1.08996 * 109.46947 * 132.74350 * 11 10 8 36 36 H 1.09000 * 109.46683 * 12.74577 * 11 10 8 37 37 H 0.96996 * 120.00257 * 174.99783 * 15 14 12 38 38 H 1.09004 * 109.47314 * 34.71963 * 20 10 8 39 39 H 1.09001 * 109.47697 * 154.72000 * 20 10 8 40 40 H 1.08004 * 120.79140 * 0.02562 * 22 21 20 41 41 H 1.07996 * 120.41942 * 180.22149 * 23 22 21 42 42 H 1.07993 * 119.61851 * 179.74633 * 24 23 22 43 43 H 1.08006 * 119.61817 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2071 0.0414 0.0017 7 6 4.0744 2.5754 0.0000 8 6 4.3019 3.0239 1.4206 9 8 3.9440 2.3221 2.3427 10 7 4.9030 4.2048 1.6663 11 6 5.3358 5.0523 0.5524 12 6 6.8385 5.0129 0.4455 13 1 7.4046 5.9326 0.4518 14 6 7.4905 3.8027 0.3397 15 7 6.7980 2.6894 0.2364 16 14 9.3576 3.7442 0.3431 17 1 9.8685 4.3171 1.6143 18 1 9.8090 2.3350 0.2190 19 1 9.8797 4.5343 -0.8009 20 6 5.1246 4.6406 3.0473 21 6 3.8887 5.3341 3.5598 22 6 3.6877 6.6838 3.3130 23 6 2.5341 7.2789 3.7997 24 6 1.6341 6.5150 4.5189 25 7 1.8605 5.2347 4.7387 26 6 2.9440 4.6344 4.2859 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.4045 -0.2627 1.0295 31 1 3.6587 -0.7483 -0.5120 32 1 5.1516 0.2211 -0.5120 33 1 3.4465 3.3029 -0.5146 34 1 5.0325 2.4948 -0.5135 35 1 5.0108 6.0777 0.7285 36 1 4.8958 4.6859 -0.3751 37 1 7.2544 1.8462 0.0892 38 1 5.3400 3.7736 3.6718 39 1 5.9681 5.3303 3.0798 40 1 4.4107 7.2569 2.7515 41 1 2.3432 8.3271 3.6233 42 1 0.7350 6.9719 4.9050 43 1 3.0950 3.5837 4.4855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063484975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:44 Heat of formation + Delta-G solvation = -79.769766 kcal Electronic energy + Delta-G solvation = -28432.462393 eV Core-core repulsion = 24478.087202 eV Total energy + Delta-G solvation = -3954.375192 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67350 -41.18676 -40.12350 -37.73140 -36.82716 -36.39553 -34.65832 -33.29889 -32.56459 -30.14139 -29.37119 -28.61169 -27.48459 -26.22739 -24.83284 -24.32166 -23.19634 -21.88963 -20.02943 -19.10943 -18.59537 -18.29678 -18.01994 -17.69181 -17.40569 -17.06977 -16.85175 -16.45625 -16.21064 -15.50722 -15.28681 -15.03133 -14.86865 -14.55160 -14.29264 -14.20313 -14.00889 -13.91920 -13.74185 -13.58295 -13.22119 -12.96925 -12.90519 -12.86075 -12.64711 -12.44554 -12.38542 -11.80283 -11.74570 -11.67314 -11.66656 -10.88539 -10.70704 -10.60361 -10.43247 -10.00602 -9.57639 -9.14829 -8.09546 -6.32191 0.16145 0.35857 1.17106 1.47855 1.53157 1.56887 1.73588 2.14421 2.43987 2.55129 2.95936 3.07324 3.28533 3.54663 3.90753 3.95018 4.08769 4.14669 4.23732 4.28221 4.33531 4.34588 4.45184 4.54703 4.63531 4.70276 4.77603 4.83811 4.86100 4.89128 4.92262 5.03912 5.17114 5.22925 5.23288 5.39499 5.40696 5.74265 5.81517 5.98637 6.14881 6.34777 6.74926 6.98076 7.03144 7.20204 7.42408 7.69160 8.86631 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.007701 B = 0.007098 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.122204 B = 3943.993256 C = 6963.923301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.371 6.371 3 C 0.642 3.358 4 O -0.615 6.615 5 N -0.574 5.574 6 C 0.097 3.903 7 C 0.112 3.888 8 C 0.529 3.471 9 O -0.612 6.612 10 N -0.575 5.575 11 C 0.227 3.773 12 C -0.548 4.548 13 H 0.065 0.935 14 C 0.045 3.955 15 N -0.893 5.893 16 Si 0.954 3.046 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.272 1.272 20 C 0.173 3.827 21 C -0.153 4.153 22 C -0.066 4.066 23 C -0.165 4.165 24 C 0.081 3.919 25 N -0.517 5.517 26 C 0.099 3.901 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.143 0.857 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.173 0.827 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.269 0.731 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.185 0.815 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 1.239 -0.428 5.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.284 6.284 3 C 0.396 3.604 4 O -0.507 6.507 5 N -0.312 5.312 6 C -0.044 4.044 7 C -0.012 4.012 8 C 0.319 3.681 9 O -0.496 6.496 10 N -0.305 5.305 11 C 0.107 3.893 12 C -0.586 4.586 13 H 0.083 0.917 14 C -0.157 4.157 15 N -0.532 5.532 16 Si 0.781 3.219 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.197 1.197 20 C 0.049 3.951 21 C -0.156 4.156 22 C -0.093 4.093 23 C -0.184 4.184 24 C -0.076 4.076 25 N -0.227 5.227 26 C -0.058 4.058 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.161 0.839 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.189 0.811 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.170 0.830 41 H 0.191 0.809 42 H 0.202 0.798 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.641 0.469 0.526 6.678 hybrid contribution 1.568 0.177 -0.308 1.607 sum -5.073 0.645 0.218 5.119 Atomic orbital electron populations 1.23483 0.73126 1.05670 1.02163 1.86231 1.25610 1.29659 1.86913 1.18318 0.83772 0.82266 0.75994 1.90906 1.65269 1.36305 1.58246 1.46466 1.01752 1.09114 1.73821 1.21783 0.96295 0.84553 1.01812 1.22242 1.01126 0.82538 0.95313 1.20872 0.75167 0.80659 0.91430 1.90489 1.55379 1.56136 1.47562 1.48304 1.56433 1.19349 1.06406 1.19389 0.94433 0.90132 0.85346 1.21719 0.92672 0.93210 1.50977 0.91659 1.25499 1.01721 0.95298 0.93202 1.69426 1.36304 0.99071 1.48374 0.85677 0.81152 0.76730 0.78310 1.20786 1.21511 1.19707 1.19849 0.93618 0.98012 0.83613 1.21401 0.98987 0.95943 0.99286 1.21826 0.97985 0.93324 0.96144 1.22504 0.94250 1.03044 0.98586 1.23363 0.99937 0.89001 0.95286 1.67652 1.20444 1.13004 1.21564 1.22516 0.89606 0.99361 0.94287 0.93286 0.91753 0.83933 0.93981 0.88842 0.89563 0.90685 0.81111 0.93950 0.94724 0.92096 0.92843 0.88654 0.82984 0.80864 0.79817 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.24 10.56 113.37 1.20 2.44 16 2 O -0.37 -12.64 9.39 -55.47 -0.52 -13.16 16 3 C 0.64 26.97 8.39 129.79 1.09 28.06 16 4 O -0.61 -29.45 15.71 19.81 0.31 -29.14 16 5 N -0.57 -23.51 2.36 -981.63 -2.32 -25.83 16 6 C 0.10 3.26 10.49 127.77 1.34 4.60 16 7 C 0.11 4.95 4.04 85.63 0.35 5.30 16 8 C 0.53 25.52 6.41 87.66 0.56 26.08 16 9 O -0.61 -32.52 15.53 -3.02 -0.05 -32.56 16 10 N -0.58 -25.62 2.11 -830.50 -1.75 -27.37 16 11 C 0.23 9.71 5.66 85.63 0.48 10.19 16 12 C -0.55 -24.71 9.11 25.60 0.23 -24.48 16 13 H 0.07 2.88 7.82 -2.91 -0.02 2.85 16 14 C 0.04 2.04 5.33 84.65 0.45 2.49 16 15 N -0.89 -41.44 8.27 21.45 0.18 -41.26 16 16 Si 0.95 37.87 29.54 68.60 2.03 39.89 16 17 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 20 C 0.17 7.06 5.43 85.63 0.46 7.52 16 21 C -0.15 -5.68 5.44 -19.77 -0.11 -5.79 16 22 C -0.07 -1.99 9.88 22.47 0.22 -1.77 16 23 C -0.16 -4.11 10.11 22.36 0.23 -3.88 16 24 C 0.08 2.30 11.18 84.69 0.95 3.25 16 25 N -0.52 -19.17 10.36 -195.84 -2.03 -21.19 16 26 C 0.10 3.96 10.67 84.67 0.90 4.87 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 2.56 7.37 -2.39 -0.02 2.54 16 32 H 0.09 2.72 7.89 -2.39 -0.02 2.70 16 33 H 0.08 3.40 6.83 -2.38 -0.02 3.38 16 34 H 0.17 7.62 4.71 -2.39 -0.01 7.61 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.03 1.53 5.92 -2.39 -0.01 1.52 16 37 H 0.27 12.13 8.32 -92.71 -0.77 11.36 16 38 H 0.05 2.37 7.49 -2.39 -0.02 2.35 16 39 H 0.10 3.62 7.79 -2.39 -0.02 3.61 16 40 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 41 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.18 3.69 8.06 -2.91 -0.02 3.67 16 43 H 0.13 5.72 7.68 -2.91 -0.02 5.70 16 Total: -1.00 -66.28 363.98 5.23 -61.05 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 1.02 Total: 30.71 kcal Atomic # 6 Polarization: 50.51 SS G_CDS: 8.36 Total: 58.87 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -5.92 Total: -115.66 kcal Atomic # 8 Polarization: -74.60 SS G_CDS: -0.26 Total: -74.86 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.89 kcal Total: -66.28 5.23 -61.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063484975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.722 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds