Wall clock time and date at job start Tue Mar 31 2020 12:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47144 * 2 1 4 4 C 1.37099 * 119.99805 * 264.77396 * 3 2 1 5 5 H 1.08000 * 119.99922 * 138.85035 * 4 3 2 6 6 C 1.38951 * 120.00145 * 318.84933 * 4 3 2 7 7 N 1.31408 * 119.99774 * 341.83429 * 6 4 3 8 8 Si 1.86800 * 120.00046 * 161.83501 * 6 4 3 9 9 H 1.48499 * 109.47087 * 60.00258 * 8 6 4 10 10 H 1.48505 * 109.46860 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47211 * 300.00014 * 8 6 4 12 12 C 1.34772 * 119.99943 * 84.76895 * 3 2 1 13 13 O 1.21293 * 119.99944 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00101 * 0.02562 * 12 3 2 15 15 C 1.52999 * 109.47321 * 179.97438 * 14 12 3 16 16 C 1.52995 * 109.47449 * 179.97438 * 15 14 12 17 17 N 1.46500 * 109.47298 * 179.97438 * 16 15 14 18 18 C 1.39679 * 120.00040 * 179.97438 * 17 16 15 19 19 C 1.38914 * 120.07260 * 359.72951 * 18 17 16 20 20 C 1.38101 * 119.92341 * 179.72296 * 19 18 17 21 21 C 1.38294 * 120.07170 * 0.54740 * 20 19 18 22 22 N 1.48002 * 119.92257 * 179.70115 * 21 20 19 23 23 O 1.21801 * 119.99879 * 180.02562 * 22 21 20 24 24 O 1.21804 * 120.00199 * 0.02562 * 22 21 20 25 25 C 1.38281 * 120.15315 * 359.72519 * 21 20 19 26 26 C 1.38104 * 120.07276 * 0.02562 * 25 21 20 27 27 H 1.09004 * 109.47299 * 59.99722 * 1 2 3 28 28 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46763 * 299.99863 * 1 2 3 30 30 H 1.09007 * 109.46763 * 240.00137 * 2 1 3 31 31 H 1.08990 * 109.47353 * 120.00097 * 2 1 3 32 32 H 0.97006 * 119.99760 * 179.97438 * 7 6 4 33 33 H 1.08992 * 109.47734 * 59.99103 * 14 12 3 34 34 H 1.09010 * 109.46698 * 299.99048 * 14 12 3 35 35 H 1.09002 * 109.47207 * 59.99155 * 15 14 12 36 36 H 1.09004 * 109.46871 * 299.99714 * 15 14 12 37 37 H 1.09002 * 109.47260 * 59.99611 * 16 15 14 38 38 H 1.09004 * 109.47196 * 299.99938 * 16 15 14 39 39 H 0.97000 * 120.00118 * 359.97438 * 17 16 15 40 40 H 1.08004 * 120.03955 * 359.97438 * 19 18 17 41 41 H 1.07994 * 119.96658 * 180.25230 * 20 19 18 42 42 H 1.07997 * 119.96974 * 180.02562 * 25 21 20 43 43 H 1.08003 * 120.04111 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3488 1.9914 -1.1824 5 1 2.0742 3.0218 -1.3535 6 6 3.0371 1.2842 -2.1606 7 7 3.6790 0.1818 -1.8452 8 14 3.0498 1.9006 -3.9240 9 1 3.6535 3.2565 -3.9700 10 1 3.8480 0.9740 -4.7664 11 1 1.6578 1.9608 -4.4374 12 6 2.1427 2.0520 1.1623 13 8 2.5474 3.1954 1.1623 14 6 1.7799 1.3811 2.4620 15 6 2.0118 2.3536 3.6201 16 6 1.6429 1.6727 4.9396 17 7 1.8656 2.6038 6.0486 18 6 1.5968 2.2049 7.3600 19 6 1.1130 0.9277 7.6138 20 6 0.8538 0.5347 8.9121 21 6 1.0646 1.4149 9.9578 22 7 0.7794 0.9924 11.3473 23 8 0.9641 1.7666 12.2692 24 8 0.3599 -0.1295 11.5688 25 6 1.5407 2.6889 9.7081 26 6 1.8069 3.0866 8.4126 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.1592 -0.3121 -2.5282 33 1 2.4018 0.4968 2.6005 34 1 0.7304 1.0872 2.4385 35 1 1.3901 3.2382 3.4818 36 1 3.0613 2.6472 3.6434 37 1 2.2643 0.7880 5.0781 38 1 0.5933 1.3794 4.9161 39 1 2.1996 3.4972 5.8722 40 1 0.9437 0.2415 6.7972 41 1 0.4815 -0.4594 9.1106 42 1 1.7046 3.3737 10.5270 43 1 2.1784 4.0820 8.2182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:01 Heat of formation + Delta-G solvation = -19.696848 kcal Electronic energy + Delta-G solvation = -25602.455281 eV Core-core repulsion = 21650.685047 eV Total energy + Delta-G solvation = -3951.770235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.17636 -40.03506 -38.78196 -36.70806 -36.58216 -35.11432 -33.31349 -32.09016 -31.68745 -30.37135 -29.53051 -27.34712 -25.59993 -24.71346 -23.61512 -22.47018 -22.02327 -21.49945 -19.45112 -18.90776 -18.69635 -17.68977 -17.54279 -16.91677 -16.45860 -15.89695 -15.75716 -15.16808 -15.04177 -14.52447 -14.29544 -14.14238 -14.11267 -13.59623 -13.50395 -13.02849 -12.88513 -12.45921 -12.02778 -11.85651 -11.75864 -11.59708 -11.53488 -11.41151 -11.23600 -11.20440 -11.09986 -11.04601 -10.99080 -10.63386 -10.43669 -10.38889 -10.18031 -9.74374 -8.99878 -8.51902 -8.20701 -7.51872 -6.40574 -4.09442 -0.15448 0.71318 1.31566 1.42706 2.79746 3.09113 3.13358 3.19417 3.22457 3.81534 4.07587 4.11488 4.25179 4.51091 4.56174 4.66616 4.83121 4.88997 4.94333 5.03923 5.15617 5.28345 5.34688 5.50713 5.53873 5.56987 5.57618 5.66595 5.72405 5.91902 5.96078 6.08392 6.17914 6.29368 6.29712 6.35925 6.42803 6.64282 6.77490 7.08390 7.11795 7.50108 7.61699 8.21047 8.42240 9.10923 9.31223 9.92261 10.64599 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.001862 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.731095 B =15032.875711 C =15507.524203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.440 5.440 4 C -0.311 4.311 5 H 0.087 0.913 6 C 0.039 3.961 7 N -0.872 5.872 8 Si 0.919 3.081 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.460 3.540 13 O -0.584 6.584 14 C -0.132 4.132 15 C -0.111 4.111 16 C 0.111 3.889 17 N -0.720 5.720 18 C 0.272 3.728 19 C -0.201 4.201 20 C -0.001 4.001 21 C -0.117 4.117 22 N 0.044 4.956 23 O -0.183 6.183 24 O -0.181 6.181 25 C -0.003 4.003 26 C -0.200 4.200 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.268 0.732 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.409 0.591 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 -0.697 15.775 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.022 4.022 3 N -0.159 5.159 4 C -0.439 4.439 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.509 5.509 8 Si 0.745 3.255 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.248 3.752 13 O -0.468 6.468 14 C -0.173 4.173 15 C -0.150 4.150 16 C -0.012 4.012 17 N -0.344 5.344 18 C 0.161 3.839 19 C -0.224 4.224 20 C -0.022 4.022 21 C -0.204 4.204 22 N 0.557 4.443 23 O -0.394 6.394 24 O -0.393 6.393 25 C -0.024 4.024 26 C -0.224 4.224 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.246 0.754 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.999 -0.237 14.800 15.623 hybrid contribution 0.122 0.255 -0.661 0.718 sum -4.877 0.018 14.139 14.957 Atomic orbital electron populations 1.22227 0.98206 1.00398 1.01518 1.21463 0.91592 0.85648 1.03477 1.43451 1.55884 1.11708 1.04902 1.19318 1.35042 0.98517 0.91051 0.89552 1.25429 0.93994 0.96538 1.00613 1.69909 1.29354 1.17524 1.34158 0.86131 0.78408 0.78875 0.82080 1.19725 1.20942 1.19858 1.20281 0.82102 0.87926 0.84886 1.90518 1.50444 1.18896 1.86945 1.21535 1.02553 0.99196 0.94004 1.21447 1.03488 0.99005 0.91025 1.21723 1.01214 0.92655 0.85612 1.45204 1.68836 1.17574 1.02754 1.18258 0.87784 0.92552 0.85322 1.20681 1.08866 0.96270 0.96610 1.20751 0.91940 0.99127 0.90355 1.20763 1.20060 0.98453 0.81104 1.43536 0.97353 1.00088 1.03323 1.94506 1.57146 1.50489 1.37278 1.94513 1.47640 1.06524 1.90645 1.20695 0.90891 0.92933 0.97856 1.20599 1.10210 1.01189 0.90359 0.92404 0.93052 0.93908 0.87895 0.93331 0.92162 0.89904 0.90174 0.90680 0.90534 0.91227 0.91300 0.75439 0.83653 0.83220 0.83272 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.15 37.16 0.38 -2.31 16 2 C 0.10 2.04 5.41 -4.04 -0.02 2.02 16 3 N -0.44 -10.44 2.50 -114.81 -0.29 -10.73 16 4 C -0.31 -8.28 8.84 -14.93 -0.13 -8.42 16 5 H 0.09 2.41 7.82 -52.49 -0.41 2.00 16 6 C 0.04 0.99 4.95 -17.47 -0.09 0.91 16 7 N -0.87 -22.77 11.61 55.50 0.64 -22.12 16 8 Si 0.92 19.98 29.59 -169.99 -5.03 14.95 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 C 0.46 10.26 7.59 -10.99 -0.08 10.18 16 13 O -0.58 -15.19 15.89 5.55 0.09 -15.10 16 14 C -0.13 -2.00 4.31 -27.89 -0.12 -2.12 16 15 C -0.11 -1.39 4.62 -26.73 -0.12 -1.51 16 16 C 0.11 0.96 4.91 -4.04 -0.02 0.94 16 17 N -0.72 -5.62 5.73 -58.63 -0.34 -5.96 16 18 C 0.27 2.17 6.65 -83.78 -0.56 1.61 16 19 C -0.20 -1.58 9.31 -39.38 -0.37 -1.94 16 20 C 0.00 -0.01 9.55 -39.61 -0.38 -0.39 16 21 C -0.12 -1.20 6.85 -79.92 -0.55 -1.74 16 22 N 0.04 0.55 4.45 33.98 0.15 0.71 16 23 O -0.18 -2.44 18.44 -29.46 -0.54 -2.98 16 24 O -0.18 -2.44 18.44 -29.46 -0.54 -2.98 16 25 C 0.00 -0.03 9.55 -39.61 -0.38 -0.41 16 26 C -0.20 -1.46 9.90 -39.38 -0.39 -1.85 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.63 6.60 -51.93 -0.34 0.29 16 30 H 0.10 2.32 5.76 -51.93 -0.30 2.02 16 31 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16 32 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.08 1.17 7.41 -51.93 -0.38 0.79 16 34 H 0.08 1.06 6.54 -51.92 -0.34 0.72 16 35 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.07 0.57 7.96 -51.93 -0.41 0.15 16 38 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 39 H 0.41 2.84 8.49 -40.82 -0.35 2.49 16 40 H 0.15 0.93 6.74 -52.48 -0.35 0.58 16 41 H 0.15 1.12 7.60 -52.49 -0.40 0.72 16 42 H 0.15 1.06 7.60 -52.49 -0.40 0.66 16 43 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -31.78 366.53 -8.85 -40.63 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.69 Total: 3.10 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.83 Total: -5.03 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.17 Total: -38.11 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -1.00 Total: -21.06 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.78 -8.85 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.937 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds