Wall clock time and date at job start Tue Mar 31 2020 12:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47144 * 2 1 4 4 C 1.37099 * 119.99805 * 264.77396 * 3 2 1 5 5 H 1.08000 * 119.99922 * 138.85035 * 4 3 2 6 6 C 1.38951 * 120.00145 * 318.84933 * 4 3 2 7 7 N 1.31408 * 119.99774 * 341.83429 * 6 4 3 8 8 Si 1.86800 * 120.00046 * 161.83501 * 6 4 3 9 9 H 1.48499 * 109.47087 * 60.00258 * 8 6 4 10 10 H 1.48505 * 109.46860 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47211 * 300.00014 * 8 6 4 12 12 C 1.34772 * 119.99943 * 84.76895 * 3 2 1 13 13 O 1.21293 * 119.99944 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00101 * 0.02562 * 12 3 2 15 15 C 1.52999 * 109.47321 * 179.97438 * 14 12 3 16 16 C 1.52995 * 109.47449 * 179.97438 * 15 14 12 17 17 N 1.46500 * 109.47298 * 179.97438 * 16 15 14 18 18 C 1.39679 * 120.00040 * 179.97438 * 17 16 15 19 19 C 1.38914 * 120.07260 * 359.72951 * 18 17 16 20 20 C 1.38101 * 119.92341 * 179.72296 * 19 18 17 21 21 C 1.38294 * 120.07170 * 0.54740 * 20 19 18 22 22 N 1.48002 * 119.92257 * 179.70115 * 21 20 19 23 23 O 1.21801 * 119.99879 * 180.02562 * 22 21 20 24 24 O 1.21804 * 120.00199 * 0.02562 * 22 21 20 25 25 C 1.38281 * 120.15315 * 359.72519 * 21 20 19 26 26 C 1.38104 * 120.07276 * 0.02562 * 25 21 20 27 27 H 1.09004 * 109.47299 * 59.99722 * 1 2 3 28 28 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46763 * 299.99863 * 1 2 3 30 30 H 1.09007 * 109.46763 * 240.00137 * 2 1 3 31 31 H 1.08990 * 109.47353 * 120.00097 * 2 1 3 32 32 H 0.97006 * 119.99760 * 179.97438 * 7 6 4 33 33 H 1.08992 * 109.47734 * 59.99103 * 14 12 3 34 34 H 1.09010 * 109.46698 * 299.99048 * 14 12 3 35 35 H 1.09002 * 109.47207 * 59.99155 * 15 14 12 36 36 H 1.09004 * 109.46871 * 299.99714 * 15 14 12 37 37 H 1.09002 * 109.47260 * 59.99611 * 16 15 14 38 38 H 1.09004 * 109.47196 * 299.99938 * 16 15 14 39 39 H 0.97000 * 120.00118 * 359.97438 * 17 16 15 40 40 H 1.08004 * 120.03955 * 359.97438 * 19 18 17 41 41 H 1.07994 * 119.96658 * 180.25230 * 20 19 18 42 42 H 1.07997 * 119.96974 * 180.02562 * 25 21 20 43 43 H 1.08003 * 120.04111 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3488 1.9914 -1.1824 5 1 2.0742 3.0218 -1.3535 6 6 3.0371 1.2842 -2.1606 7 7 3.6790 0.1818 -1.8452 8 14 3.0498 1.9006 -3.9240 9 1 3.6535 3.2565 -3.9700 10 1 3.8480 0.9740 -4.7664 11 1 1.6578 1.9608 -4.4374 12 6 2.1427 2.0520 1.1623 13 8 2.5474 3.1954 1.1623 14 6 1.7799 1.3811 2.4620 15 6 2.0118 2.3536 3.6201 16 6 1.6429 1.6727 4.9396 17 7 1.8656 2.6038 6.0486 18 6 1.5968 2.2049 7.3600 19 6 1.1130 0.9277 7.6138 20 6 0.8538 0.5347 8.9121 21 6 1.0646 1.4149 9.9578 22 7 0.7794 0.9924 11.3473 23 8 0.9641 1.7666 12.2692 24 8 0.3599 -0.1295 11.5688 25 6 1.5407 2.6889 9.7081 26 6 1.8069 3.0866 8.4126 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.1592 -0.3121 -2.5282 33 1 2.4018 0.4968 2.6005 34 1 0.7304 1.0872 2.4385 35 1 1.3901 3.2382 3.4818 36 1 3.0613 2.6472 3.6434 37 1 2.2643 0.7880 5.0781 38 1 0.5933 1.3794 4.9161 39 1 2.1996 3.4972 5.8722 40 1 0.9437 0.2415 6.7972 41 1 0.4815 -0.4594 9.1106 42 1 1.7046 3.3737 10.5270 43 1 2.1784 4.0820 8.2182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:00 Heat of formation + Delta-G solvation = -37.973498 kcal Electronic energy + Delta-G solvation = -25603.247816 eV Core-core repulsion = 21650.685047 eV Total energy + Delta-G solvation = -3952.562770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.05409 -40.73866 -40.40548 -37.54020 -37.51546 -36.82331 -34.46729 -33.79378 -32.31335 -31.26223 -31.07392 -28.47280 -26.84597 -25.91220 -24.47453 -23.84243 -22.93894 -22.35127 -20.50448 -20.22145 -19.59968 -18.70562 -18.43753 -18.38791 -17.73340 -17.16313 -16.86649 -16.52811 -15.95435 -15.75648 -15.55684 -15.13062 -14.69282 -14.60281 -14.46911 -14.36617 -14.17338 -13.70951 -13.58661 -13.13446 -12.96237 -12.74907 -12.68608 -12.61313 -12.50778 -12.31282 -12.20902 -12.20217 -12.14841 -12.10943 -11.98237 -11.70643 -11.34876 -10.86810 -10.34444 -10.31900 -9.37631 -8.83323 -8.33992 -6.09926 -1.00246 0.12958 0.52439 0.63545 1.38347 1.40296 1.49536 2.09549 2.12975 2.30996 2.46229 3.02085 3.13903 3.51773 3.66879 3.80787 3.92745 4.00992 4.04809 4.14935 4.27265 4.34234 4.44619 4.55026 4.59885 4.68292 4.73571 4.75260 4.79454 4.92150 4.94717 4.99463 5.08085 5.19638 5.25723 5.31848 5.34903 5.45985 5.51359 5.58860 5.99437 6.24762 6.48183 6.57575 6.64715 7.21079 7.52041 8.11587 8.69079 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.001862 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.731095 B =15032.875711 C =15507.524203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.458 5.458 4 C -0.341 4.341 5 H 0.058 0.942 6 C 0.003 3.997 7 N -0.891 5.891 8 Si 0.977 3.023 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.264 1.264 12 C 0.444 3.556 13 O -0.634 6.634 14 C -0.119 4.119 15 C -0.102 4.102 16 C 0.121 3.879 17 N -0.716 5.716 18 C 0.273 3.727 19 C -0.198 4.198 20 C -0.004 4.004 21 C -0.137 4.137 22 N 0.047 4.953 23 O -0.207 6.207 24 O -0.207 6.207 25 C -0.006 4.006 26 C -0.194 4.194 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.272 0.728 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.414 0.586 40 H 0.166 0.834 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 -1.599 15.673 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 N -0.177 5.177 4 C -0.470 4.470 5 H 0.076 0.924 6 C -0.199 4.199 7 N -0.528 5.528 8 Si 0.801 3.199 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.189 1.189 12 C 0.234 3.766 13 O -0.521 6.521 14 C -0.159 4.159 15 C -0.141 4.141 16 C -0.002 4.002 17 N -0.339 5.339 18 C 0.161 3.839 19 C -0.222 4.222 20 C -0.024 4.024 21 C -0.224 4.224 22 N 0.553 4.447 23 O -0.415 6.415 24 O -0.415 6.415 25 C -0.027 4.027 26 C -0.217 4.217 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.251 0.749 40 H 0.183 0.817 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.753 -1.179 14.737 15.864 hybrid contribution 0.403 0.596 -0.736 1.029 sum -5.350 -0.582 14.001 15.000 Atomic orbital electron populations 1.22120 0.95233 1.02505 1.01391 1.21572 0.93993 0.83471 1.03207 1.43777 1.56189 1.13056 1.04665 1.19257 1.36406 0.97974 0.93331 0.92404 1.26101 0.93342 0.96701 1.03766 1.69972 1.29514 1.18151 1.35210 0.85253 0.78819 0.77976 0.77864 1.20489 1.19805 1.18864 1.21497 0.80772 0.87478 0.86822 1.90477 1.52385 1.21237 1.88002 1.21488 1.04462 0.99477 0.90515 1.21296 1.02129 0.98353 0.92287 1.21597 1.02621 0.92447 0.83564 1.45153 1.68470 1.17755 1.02545 1.18377 0.87422 0.92766 0.85319 1.20890 1.08160 0.96515 0.96599 1.20914 0.91792 0.99339 0.90350 1.21019 1.21894 0.99718 0.79766 1.43896 0.96842 0.99738 1.04257 1.94481 1.58026 1.50529 1.38442 1.94486 1.48686 1.07106 1.91175 1.20873 0.90627 0.92451 0.98731 1.20828 1.09250 1.02082 0.89551 0.94536 0.89744 0.92032 0.90799 0.90885 0.91842 0.88137 0.87246 0.91891 0.92502 0.89815 0.89333 0.74907 0.81681 0.82450 0.82469 0.81623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 10.15 71.98 0.73 -3.89 16 2 C 0.10 3.88 5.41 86.38 0.47 4.34 16 3 N -0.46 -21.77 2.50 -635.54 -1.59 -23.37 16 4 C -0.34 -18.64 8.84 84.04 0.74 -17.90 16 5 H 0.06 3.40 7.82 -2.91 -0.02 3.38 16 6 C 0.00 0.18 4.95 84.93 0.42 0.60 16 7 N -0.89 -46.68 11.61 21.66 0.25 -46.43 16 8 Si 0.98 41.30 29.59 68.60 2.03 43.33 16 9 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 12 C 0.44 19.72 7.59 87.66 0.67 20.39 16 13 O -0.63 -33.79 15.89 -3.07 -0.05 -33.84 16 14 C -0.12 -3.29 4.31 29.85 0.13 -3.16 16 15 C -0.10 -2.31 4.62 30.59 0.14 -2.17 16 16 C 0.12 1.60 4.91 86.38 0.42 2.02 16 17 N -0.72 -8.67 5.73 -339.41 -1.95 -10.62 16 18 C 0.27 3.43 6.65 38.21 0.25 3.69 16 19 C -0.20 -2.45 9.31 22.40 0.21 -2.24 16 20 C 0.00 -0.06 9.55 22.25 0.21 0.16 16 21 C -0.14 -2.65 6.85 36.40 0.25 -2.40 16 22 N 0.05 1.18 4.45 -46.42 -0.21 0.98 16 23 O -0.21 -5.64 18.44 18.88 0.35 -5.29 16 24 O -0.21 -5.65 18.44 18.88 0.35 -5.31 16 25 C -0.01 -0.10 9.55 22.25 0.21 0.11 16 26 C -0.19 -2.29 9.90 22.40 0.22 -2.07 16 27 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.60 6.60 -2.38 -0.02 1.58 16 30 H 0.07 3.30 5.76 -2.38 -0.01 3.28 16 31 H 0.07 2.39 6.66 -2.39 -0.02 2.37 16 32 H 0.27 13.40 8.31 -92.70 -0.77 12.63 16 33 H 0.10 2.47 7.41 -2.39 -0.02 2.45 16 34 H 0.11 2.41 6.54 -2.38 -0.02 2.40 16 35 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 36 H 0.06 1.51 8.10 -2.38 -0.02 1.49 16 37 H 0.08 0.95 7.96 -2.39 -0.02 0.93 16 38 H 0.09 0.91 7.94 -2.38 -0.02 0.89 16 39 H 0.41 4.52 8.49 -92.71 -0.79 3.74 16 40 H 0.17 1.35 6.74 -2.91 -0.02 1.33 16 41 H 0.16 2.11 7.60 -2.91 -0.02 2.09 16 42 H 0.16 2.06 7.60 -2.91 -0.02 2.04 16 43 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -72.70 366.53 4.52 -68.17 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.26 Total: 14.89 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 5.08 Total: -2.52 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -3.49 Total: -79.43 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: 0.65 Total: -44.44 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -72.70 4.52 -68.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.199 kcal (2) G-P(sol) polarization free energy of solvation -72.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds