Wall clock time and date at job start Tue Mar 31 2020 12:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47083 * 2 1 4 4 C 1.36936 * 119.99993 * 263.91798 * 3 2 1 5 5 H 1.07995 * 120.00035 * 190.12628 * 4 3 2 6 6 C 1.38812 * 120.00045 * 10.12316 * 4 3 2 7 7 N 1.31624 * 119.99939 * 27.10701 * 6 4 3 8 8 Si 1.86800 * 119.99951 * 207.11096 * 6 4 3 9 9 H 1.48501 * 109.47419 * 94.99176 * 8 6 4 10 10 H 1.48501 * 109.47036 * 214.98663 * 8 6 4 11 11 H 1.48498 * 109.47265 * 334.99014 * 8 6 4 12 12 C 1.46500 * 120.00010 * 83.90875 * 3 2 1 13 13 C 1.50695 * 109.47359 * 270.00198 * 12 3 2 14 14 O 1.21233 * 120.00284 * 0.02562 * 13 12 3 15 15 N 1.34782 * 120.00212 * 179.97438 * 13 12 3 16 16 C 1.34772 * 120.00317 * 179.97438 * 15 13 12 17 17 O 1.21544 * 120.00015 * 0.02562 * 16 15 13 18 18 N 1.34773 * 120.00141 * 180.02562 * 16 15 13 19 19 C 1.40135 * 120.00518 * 185.25929 * 18 16 15 20 20 C 1.38838 * 120.02042 * 213.49314 * 19 18 16 21 21 C 1.38085 * 119.98310 * 180.23255 * 20 19 18 22 22 C 1.38719 * 120.01708 * 359.51351 * 21 20 19 23 23 O 1.35977 * 119.98658 * 180.25665 * 22 21 20 24 24 C 1.42896 * 117.00291 * 180.02562 * 23 22 21 25 25 C 1.38714 * 120.02970 * 0.23475 * 22 21 20 26 26 C 1.38091 * 120.01249 * 359.97438 * 25 22 21 27 27 H 1.09011 * 109.46846 * 299.99533 * 1 2 3 28 28 H 1.08993 * 109.47640 * 60.00079 * 1 2 3 29 29 H 1.08995 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47238 * 240.00383 * 2 1 3 31 31 H 1.09002 * 109.47070 * 119.99796 * 2 1 3 32 32 H 0.97000 * 119.99227 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46880 * 149.99989 * 12 3 2 34 34 H 1.09004 * 109.46956 * 30.00848 * 12 3 2 35 35 H 0.97008 * 119.99517 * 0.02562 * 15 13 12 36 36 H 0.97002 * 119.99722 * 5.26845 * 18 16 15 37 37 H 1.07993 * 120.00659 * 0.02562 * 20 19 18 38 38 H 1.08009 * 119.99037 * 179.79347 * 21 20 19 39 39 H 1.09002 * 109.47508 * 180.02562 * 24 23 22 40 40 H 1.09009 * 109.46974 * 299.99747 * 24 23 22 41 41 H 1.08997 * 109.47251 * 59.99305 * 24 23 22 42 42 H 1.07999 * 119.99452 * 180.02562 * 25 22 21 43 43 H 1.08000 * 120.00772 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3650 1.9849 -1.1792 5 1 2.8757 2.9364 -1.1691 6 6 2.0602 1.3737 -2.3877 7 7 1.0327 0.5552 -2.4704 8 14 3.1081 1.7129 -3.8964 9 1 4.1427 0.6559 -4.0284 10 1 2.2471 1.7165 -5.1064 11 1 3.7674 3.0359 -3.7540 12 6 2.1356 2.1168 1.2616 13 6 0.8438 2.8398 1.5434 14 8 -0.0833 2.7494 0.7676 15 7 0.7188 3.5863 2.6587 16 6 -0.4363 4.2334 2.9105 17 8 -1.3654 4.1435 2.1322 18 7 -0.5611 4.9802 4.0255 19 6 -1.7950 5.5630 4.3441 20 6 -1.8370 6.7946 4.9838 21 6 -3.0532 7.3659 5.3016 22 6 -4.2330 6.7145 4.9729 23 8 -5.4304 7.2802 5.2816 24 6 -6.6050 6.5539 4.9143 25 6 -4.1919 5.4865 4.3291 26 6 -2.9762 4.9120 4.0145 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.8200 0.1279 -3.3149 33 1 2.9478 2.8398 1.1864 34 1 2.3451 1.4179 2.0714 35 1 1.4606 3.6584 3.2797 36 1 0.2034 5.1144 4.6074 37 1 -0.9186 7.3039 5.2357 38 1 -3.0860 8.3224 5.8023 39 1 -7.4889 7.1154 5.2169 40 1 -6.6194 6.4088 3.8340 41 1 -6.6026 5.5838 5.4112 42 1 -5.1108 4.9801 4.0731 43 1 -2.9443 3.9561 3.5129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:08 Heat of formation + Delta-G solvation = -23.960659 kcal Electronic energy + Delta-G solvation = -26771.374592 eV Core-core repulsion = 22819.419465 eV Total energy + Delta-G solvation = -3951.955127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.03166 -40.06062 -38.51313 -37.13094 -35.51547 -34.46251 -33.73881 -31.38096 -31.21457 -29.68190 -29.17934 -27.38635 -26.73703 -23.88656 -23.20929 -22.54329 -21.38340 -20.44314 -19.87835 -18.71677 -18.31917 -17.46320 -16.78874 -16.25363 -15.94041 -15.89501 -15.51840 -15.03753 -14.64268 -14.51698 -14.12771 -13.88275 -13.64850 -13.48178 -13.18565 -12.99280 -12.84886 -12.67714 -12.15049 -11.89214 -11.71148 -11.59356 -11.37954 -11.09438 -10.87664 -10.76295 -10.50004 -10.33913 -10.00863 -9.94810 -9.77611 -9.50224 -9.26763 -9.15328 -8.93384 -8.35362 -7.79972 -6.96848 -5.77749 -3.10844 1.17145 1.27799 2.54203 2.72110 3.11060 3.39825 3.46956 3.49084 3.58924 3.85282 4.06319 4.48822 4.66880 4.72689 4.89855 4.93875 5.11127 5.23911 5.25134 5.25977 5.39052 5.41529 5.55246 5.71988 5.85419 6.01038 6.10393 6.15150 6.26847 6.32908 6.52052 6.57206 6.73608 6.94418 6.99370 7.16556 7.22578 7.22998 7.61675 7.70664 7.79445 8.27336 8.34052 8.58038 8.86606 9.19247 9.78130 10.21482 11.24381 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023225 B = 0.002517 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.292042 B =11123.805936 C =11360.906025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.167 3.833 3 N -0.562 5.562 4 C -0.261 4.261 5 H 0.076 0.924 6 C 0.006 3.994 7 N -0.879 5.879 8 Si 0.901 3.099 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.280 1.280 12 C 0.135 3.865 13 C 0.459 3.541 14 O -0.430 6.430 15 N -0.696 5.696 16 C 0.685 3.315 17 O -0.519 6.519 18 N -0.686 5.686 19 C 0.133 3.867 20 C -0.110 4.110 21 C -0.133 4.133 22 C 0.105 3.895 23 O -0.321 6.321 24 C 0.027 3.973 25 C -0.185 4.185 26 C -0.079 4.079 27 H 0.017 0.983 28 H 0.098 0.902 29 H 0.012 0.988 30 H 0.084 0.916 31 H 0.006 0.994 32 H 0.253 0.747 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.401 0.599 36 H 0.405 0.595 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.130 0.870 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 9.623 20.006 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.042 3.958 3 N -0.280 5.280 4 C -0.390 4.390 5 H 0.094 0.906 6 C -0.193 4.193 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.214 1.214 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.001 3.999 13 C 0.241 3.759 14 O -0.293 6.293 15 N -0.365 5.365 16 C 0.386 3.614 17 O -0.389 6.389 18 N -0.337 5.337 19 C 0.039 3.961 20 C -0.131 4.131 21 C -0.152 4.152 22 C 0.059 3.941 23 O -0.234 6.234 24 C -0.068 4.068 25 C -0.204 4.204 26 C -0.100 4.100 27 H 0.036 0.964 28 H 0.117 0.883 29 H 0.031 0.969 30 H 0.102 0.898 31 H 0.025 0.975 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.235 0.765 36 H 0.240 0.760 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.148 0.852 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.289 9.401 18.552 21.728 hybrid contribution 0.864 0.227 -0.223 0.921 sum -5.425 9.628 18.329 21.403 Atomic orbital electron populations 1.22337 0.98266 0.97471 1.02662 1.20856 0.93228 0.83638 0.98069 1.44446 1.72916 1.09395 1.01220 1.19247 1.30750 1.05751 0.83239 0.90621 1.24819 0.96892 1.00148 0.97466 1.70238 1.23618 1.33402 1.24985 0.86284 0.80221 0.77844 0.82563 1.21443 1.21946 1.20506 1.21122 0.91997 0.95277 0.91501 1.24626 0.94128 0.78404 0.78719 1.90825 1.39913 1.55485 1.43040 1.45274 1.15042 1.49087 1.27095 1.16602 0.84347 0.79080 0.81340 1.91069 1.38385 1.63314 1.46154 1.42884 1.11734 1.53448 1.25605 1.17432 0.84888 0.92856 1.00967 1.20641 0.97870 0.93015 1.01535 1.20128 0.89171 1.01174 1.04718 1.18989 0.85644 0.92614 0.96809 1.86046 1.12499 1.47264 1.77622 1.23045 0.85831 0.97311 1.00625 1.21144 0.98942 0.96277 1.04062 1.21065 0.90292 1.00586 0.98041 0.96435 0.88309 0.96901 0.89816 0.97531 0.93662 0.90086 0.90774 0.76545 0.75976 0.84985 0.84924 0.88373 0.92547 0.92665 0.85202 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.72 37.16 0.32 -3.43 16 2 C 0.17 4.04 5.64 -4.04 -0.02 4.02 16 3 N -0.56 -13.67 2.12 -174.61 -0.37 -14.04 16 4 C -0.26 -7.04 9.67 -15.06 -0.15 -7.19 16 5 H 0.08 1.99 7.94 -52.49 -0.42 1.58 16 6 C 0.01 0.17 4.80 -17.43 -0.08 0.09 16 7 N -0.88 -25.32 8.69 55.49 0.48 -24.83 16 8 Si 0.90 21.65 29.63 -169.99 -5.04 16.61 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 C 0.14 2.50 6.18 -5.20 -0.03 2.47 16 13 C 0.46 9.16 7.48 -10.99 -0.08 9.08 16 14 O -0.43 -11.34 12.43 -18.21 -0.23 -11.56 16 15 N -0.70 -10.10 5.24 -15.78 -0.08 -10.18 16 16 C 0.69 11.21 8.24 -86.93 -0.72 10.50 16 17 O -0.52 -11.45 12.42 -18.48 -0.23 -11.68 16 18 N -0.69 -7.90 5.35 -14.20 -0.08 -7.98 16 19 C 0.13 1.68 6.29 -83.61 -0.53 1.15 16 20 C -0.11 -1.11 9.96 -39.42 -0.39 -1.50 16 21 C -0.13 -1.38 9.98 -39.46 -0.39 -1.78 16 22 C 0.10 1.22 6.69 -39.23 -0.26 0.96 16 23 O -0.32 -3.45 10.50 -19.67 -0.21 -3.66 16 24 C 0.03 0.20 9.81 101.05 0.99 1.19 16 25 C -0.18 -2.27 9.03 -39.46 -0.36 -2.63 16 26 C -0.08 -1.13 8.65 -39.41 -0.34 -1.47 16 27 H 0.02 0.43 6.42 -51.92 -0.33 0.09 16 28 H 0.10 2.92 6.11 -51.93 -0.32 2.60 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 2.22 6.05 -51.93 -0.31 1.91 16 31 H 0.01 0.14 7.98 -51.93 -0.41 -0.28 16 32 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 34 H 0.07 1.12 7.95 -51.93 -0.41 0.71 16 35 H 0.40 3.53 8.72 -40.82 -0.36 3.17 16 36 H 0.40 2.84 8.84 -40.82 -0.36 2.48 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.41 7.66 -51.92 -0.40 0.01 16 41 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 42 H 0.13 1.36 6.29 -52.49 -0.33 1.03 16 43 H 0.14 2.31 6.40 -52.49 -0.34 1.97 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -37.86 355.60 -8.06 -45.92 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.63 Total: 4.58 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -2.04 Total: 11.46 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.05 Total: -57.03 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.66 Total: -26.90 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.04 Total: 16.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.86 -8.06 -45.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.958 kcal (2) G-P(sol) polarization free energy of solvation -37.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds