Wall clock time and date at job start Tue Mar 31 2020 12:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47083 * 2 1 4 4 C 1.36936 * 119.99993 * 263.91798 * 3 2 1 5 5 H 1.07995 * 120.00035 * 190.12628 * 4 3 2 6 6 C 1.38812 * 120.00045 * 10.12316 * 4 3 2 7 7 N 1.31624 * 119.99939 * 27.10701 * 6 4 3 8 8 Si 1.86800 * 119.99951 * 207.11096 * 6 4 3 9 9 H 1.48501 * 109.47419 * 94.99176 * 8 6 4 10 10 H 1.48501 * 109.47036 * 214.98663 * 8 6 4 11 11 H 1.48498 * 109.47265 * 334.99014 * 8 6 4 12 12 C 1.46500 * 120.00010 * 83.90875 * 3 2 1 13 13 C 1.50695 * 109.47359 * 270.00198 * 12 3 2 14 14 O 1.21233 * 120.00284 * 0.02562 * 13 12 3 15 15 N 1.34782 * 120.00212 * 179.97438 * 13 12 3 16 16 C 1.34772 * 120.00317 * 179.97438 * 15 13 12 17 17 O 1.21544 * 120.00015 * 0.02562 * 16 15 13 18 18 N 1.34773 * 120.00141 * 180.02562 * 16 15 13 19 19 C 1.40135 * 120.00518 * 185.25929 * 18 16 15 20 20 C 1.38838 * 120.02042 * 213.49314 * 19 18 16 21 21 C 1.38085 * 119.98310 * 180.23255 * 20 19 18 22 22 C 1.38719 * 120.01708 * 359.51351 * 21 20 19 23 23 O 1.35977 * 119.98658 * 180.25665 * 22 21 20 24 24 C 1.42896 * 117.00291 * 180.02562 * 23 22 21 25 25 C 1.38714 * 120.02970 * 0.23475 * 22 21 20 26 26 C 1.38091 * 120.01249 * 359.97438 * 25 22 21 27 27 H 1.09011 * 109.46846 * 299.99533 * 1 2 3 28 28 H 1.08993 * 109.47640 * 60.00079 * 1 2 3 29 29 H 1.08995 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47238 * 240.00383 * 2 1 3 31 31 H 1.09002 * 109.47070 * 119.99796 * 2 1 3 32 32 H 0.97000 * 119.99227 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.46880 * 149.99989 * 12 3 2 34 34 H 1.09004 * 109.46956 * 30.00848 * 12 3 2 35 35 H 0.97008 * 119.99517 * 0.02562 * 15 13 12 36 36 H 0.97002 * 119.99722 * 5.26845 * 18 16 15 37 37 H 1.07993 * 120.00659 * 0.02562 * 20 19 18 38 38 H 1.08009 * 119.99037 * 179.79347 * 21 20 19 39 39 H 1.09002 * 109.47508 * 180.02562 * 24 23 22 40 40 H 1.09009 * 109.46974 * 299.99747 * 24 23 22 41 41 H 1.08997 * 109.47251 * 59.99305 * 24 23 22 42 42 H 1.07999 * 119.99452 * 180.02562 * 25 22 21 43 43 H 1.08000 * 120.00772 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3650 1.9849 -1.1792 5 1 2.8757 2.9364 -1.1691 6 6 2.0602 1.3737 -2.3877 7 7 1.0327 0.5552 -2.4704 8 14 3.1081 1.7129 -3.8964 9 1 4.1427 0.6559 -4.0284 10 1 2.2471 1.7165 -5.1064 11 1 3.7674 3.0359 -3.7540 12 6 2.1356 2.1168 1.2616 13 6 0.8438 2.8398 1.5434 14 8 -0.0833 2.7494 0.7676 15 7 0.7188 3.5863 2.6587 16 6 -0.4363 4.2334 2.9105 17 8 -1.3654 4.1435 2.1322 18 7 -0.5611 4.9802 4.0255 19 6 -1.7950 5.5630 4.3441 20 6 -1.8370 6.7946 4.9838 21 6 -3.0532 7.3659 5.3016 22 6 -4.2330 6.7145 4.9729 23 8 -5.4304 7.2802 5.2816 24 6 -6.6050 6.5539 4.9143 25 6 -4.1919 5.4865 4.3291 26 6 -2.9762 4.9120 4.0145 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.8200 0.1279 -3.3149 33 1 2.9478 2.8398 1.1864 34 1 2.3451 1.4179 2.0714 35 1 1.4606 3.6584 3.2797 36 1 0.2034 5.1144 4.6074 37 1 -0.9186 7.3039 5.2357 38 1 -3.0860 8.3224 5.8023 39 1 -7.4889 7.1154 5.2169 40 1 -6.6194 6.4088 3.8340 41 1 -6.6026 5.5838 5.4112 42 1 -5.1108 4.9801 4.0731 43 1 -2.9443 3.9561 3.5129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068958738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:01 Heat of formation + Delta-G solvation = -51.228194 kcal Electronic energy + Delta-G solvation = -26772.557001 eV Core-core repulsion = 22819.419465 eV Total energy + Delta-G solvation = -3953.137536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -42.29464 -41.04557 -39.80241 -38.30114 -37.29432 -35.79759 -35.03033 -33.31706 -32.11349 -31.50455 -30.17629 -28.69248 -27.89547 -25.60073 -24.51429 -23.62965 -22.69094 -21.97926 -21.38535 -19.93647 -19.18303 -18.68122 -18.57652 -17.33497 -17.29719 -16.94302 -16.74612 -16.63589 -15.92759 -15.76292 -15.53641 -15.37412 -14.92416 -14.75549 -14.61190 -14.25949 -13.87242 -13.73530 -13.72516 -13.63956 -13.13610 -12.83705 -12.76454 -12.65276 -12.41002 -12.33875 -12.07639 -11.88571 -11.75361 -11.65011 -11.30626 -11.01456 -10.94170 -10.66558 -10.30468 -10.02063 -8.89524 -8.73884 -7.80373 -5.14902 0.26812 0.32683 1.30560 1.35680 1.50415 1.52130 1.59835 2.33141 2.37969 2.54456 2.79564 2.96789 3.31067 3.63718 3.81422 3.88230 4.14691 4.20123 4.33320 4.36277 4.45868 4.47908 4.63073 4.69469 4.70405 4.73337 4.83704 5.02020 5.03598 5.12237 5.17637 5.26524 5.32443 5.37272 5.41561 5.58887 5.73752 5.78265 5.81738 6.21791 6.32039 6.39981 6.67998 7.18380 7.37604 7.42066 7.87838 8.25647 9.20664 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023225 B = 0.002517 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.292042 B =11123.805936 C =11360.906025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.171 3.829 3 N -0.582 5.582 4 C -0.262 4.262 5 H 0.079 0.921 6 C -0.052 4.052 7 N -0.912 5.912 8 Si 0.962 3.038 9 H -0.282 1.282 10 H -0.307 1.307 11 H -0.270 1.270 12 C 0.132 3.868 13 C 0.466 3.534 14 O -0.502 6.502 15 N -0.672 5.672 16 C 0.684 3.316 17 O -0.579 6.579 18 N -0.658 5.658 19 C 0.112 3.888 20 C -0.092 4.092 21 C -0.133 4.133 22 C 0.100 3.900 23 O -0.329 6.329 24 C 0.019 3.981 25 C -0.196 4.196 26 C -0.106 4.106 27 H 0.011 0.989 28 H 0.052 0.948 29 H 0.024 0.976 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.244 0.756 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.432 0.568 36 H 0.430 0.570 37 H 0.172 0.828 38 H 0.160 0.840 39 H 0.124 0.876 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.136 0.864 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 11.626 23.055 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.046 3.954 3 N -0.300 5.300 4 C -0.392 4.392 5 H 0.097 0.903 6 C -0.248 4.248 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.209 1.209 10 H -0.235 1.235 11 H -0.195 1.195 12 C 0.000 4.000 13 C 0.251 3.749 14 O -0.370 6.370 15 N -0.342 5.342 16 C 0.385 3.615 17 O -0.453 6.453 18 N -0.310 5.310 19 C 0.018 3.982 20 C -0.112 4.112 21 C -0.152 4.152 22 C 0.055 3.945 23 O -0.243 6.243 24 C -0.076 4.076 25 C -0.215 4.215 26 C -0.126 4.126 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.271 0.729 36 H 0.270 0.730 37 H 0.189 0.811 38 H 0.177 0.823 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.154 0.846 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.361 11.464 21.742 24.964 hybrid contribution 0.192 -0.266 -0.947 1.002 sum -4.169 11.198 20.796 23.984 Atomic orbital electron populations 1.22120 0.99569 0.97322 1.00004 1.20733 0.91989 0.84302 0.98406 1.44543 1.73191 1.09914 1.02307 1.19556 1.29754 1.05438 0.84475 0.90288 1.25553 0.98014 1.01083 1.00168 1.70436 1.25190 1.35259 1.24863 0.85328 0.78482 0.78081 0.78992 1.20865 1.23506 1.19454 1.21476 0.91452 0.96622 0.90495 1.24529 0.93540 0.78026 0.78813 1.90832 1.42170 1.58137 1.45813 1.44554 1.15758 1.47590 1.26323 1.16710 0.83699 0.79276 0.81843 1.91057 1.40431 1.65268 1.48584 1.42462 1.12534 1.51785 1.24212 1.17624 0.84347 0.94093 1.02162 1.20988 0.99415 0.91492 0.99297 1.20556 0.88706 1.01950 1.03968 1.19215 0.86720 0.92238 0.96349 1.86039 1.12879 1.47819 1.77566 1.23300 0.85513 0.98074 1.00703 1.21213 0.98655 0.97028 1.04614 1.20947 0.92155 1.00089 0.99447 0.96995 0.92875 0.95678 0.92619 0.93733 0.94662 0.86896 0.86213 0.72857 0.72963 0.81080 0.82261 0.85820 0.92802 0.91967 0.84606 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 8.72 71.98 0.63 -6.16 16 2 C 0.17 8.22 5.64 86.38 0.49 8.71 16 3 N -0.58 -27.73 2.12 -706.33 -1.50 -29.23 16 4 C -0.26 -14.12 9.67 84.03 0.81 -13.31 16 5 H 0.08 4.09 7.94 -2.91 -0.02 4.07 16 6 C -0.05 -2.95 4.80 84.86 0.41 -2.54 16 7 N -0.91 -54.67 8.69 21.65 0.19 -54.48 16 8 Si 0.96 45.45 29.63 68.60 2.03 47.48 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 C 0.13 4.49 6.18 85.63 0.53 5.02 16 13 C 0.47 18.12 7.48 87.65 0.66 18.78 16 14 O -0.50 -27.17 12.43 19.88 0.25 -26.93 16 15 N -0.67 -18.08 5.24 -440.53 -2.31 -20.38 16 16 C 0.68 21.91 8.24 179.06 1.48 23.39 16 17 O -0.58 -26.56 12.42 18.91 0.23 -26.32 16 18 N -0.66 -13.79 5.35 -317.12 -1.70 -15.49 16 19 C 0.11 2.67 6.29 38.10 0.24 2.91 16 20 C -0.09 -1.55 9.96 22.38 0.22 -1.33 16 21 C -0.13 -2.38 9.98 22.35 0.22 -2.16 16 22 C 0.10 2.21 6.69 22.50 0.15 2.36 16 23 O -0.33 -6.57 10.50 -93.29 -0.98 -7.55 16 24 C 0.02 0.25 9.81 113.37 1.11 1.37 16 25 C -0.20 -4.89 9.03 22.35 0.20 -4.69 16 26 C -0.11 -3.10 8.65 22.38 0.19 -2.91 16 27 H 0.01 0.58 6.42 -2.38 -0.02 0.57 16 28 H 0.05 3.28 6.11 -2.39 -0.01 3.26 16 29 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 3.00 6.05 -2.39 -0.01 2.98 16 31 H 0.04 1.78 7.98 -2.39 -0.02 1.76 16 32 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.11 3.17 8.03 -2.39 -0.02 3.15 16 34 H 0.12 3.03 7.95 -2.39 -0.02 3.01 16 35 H 0.43 5.86 8.72 -92.70 -0.81 5.05 16 36 H 0.43 4.37 8.84 -92.71 -0.82 3.55 16 37 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 0.76 7.66 -2.38 -0.02 0.74 16 41 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 42 H 0.14 3.01 6.29 -2.91 -0.02 3.00 16 43 H 0.11 3.81 6.40 -2.91 -0.02 3.79 16 Total: -1.00 -89.57 355.60 3.00 -86.57 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.56 Total: 16.90 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: 7.34 Total: 29.43 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -5.31 Total: -119.58 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -0.50 Total: -60.80 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -89.57 3.00 -86.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.337 kcal (2) G-P(sol) polarization free energy of solvation -89.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds