Wall clock time and date at job start Tue Mar 31 2020 13:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99993 * 2 1 4 4 C 1.50689 * 109.47476 * 270.00226 * 3 2 1 5 5 H 1.07997 * 120.00240 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00252 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99918 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00102 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47193 * 90.00313 * 8 6 4 10 10 H 1.48503 * 109.47023 * 209.99827 * 8 6 4 11 11 H 1.48500 * 109.47197 * 329.99897 * 8 6 4 12 12 C 1.34775 * 120.00050 * 180.02562 * 2 1 3 13 13 O 1.21287 * 120.00190 * 185.20481 * 12 2 1 14 14 C 1.50702 * 120.00103 * 5.19704 * 12 2 1 15 15 C 1.50700 * 109.53748 * 59.97644 * 14 12 2 16 16 C 1.38259 * 119.99044 * 52.57036 * 15 14 12 17 17 C 1.38231 * 120.05436 * 179.72056 * 16 15 14 18 18 C 1.38216 * 120.02161 * 359.97438 * 17 16 15 19 19 C 1.38441 * 119.97527 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02494 * 180.02562 * 19 18 17 21 21 C 1.38177 * 119.98354 * 232.29111 * 15 14 12 22 22 C 1.53181 * 109.61859 * 180.19528 * 14 12 2 23 23 C 1.53096 * 109.16140 * 62.93280 * 22 14 12 24 24 O 1.42904 * 109.41302 * 57.60936 * 23 22 14 25 25 C 1.42899 * 114.09723 * 298.83844 * 24 23 22 26 26 C 1.53101 * 109.41421 * 61.16200 * 25 24 23 27 27 H 1.09005 * 109.46556 * 265.74529 * 1 2 3 28 28 H 1.08996 * 109.47251 * 25.74615 * 1 2 3 29 29 H 1.09000 * 109.47135 * 145.74616 * 1 2 3 30 30 H 1.08998 * 109.47066 * 30.01059 * 3 2 1 31 31 H 1.09006 * 109.46669 * 150.00343 * 3 2 1 32 32 H 0.97000 * 120.00156 * 180.02562 * 7 6 4 33 33 H 1.08003 * 119.97262 * 359.74133 * 16 15 14 34 34 H 1.07996 * 119.98915 * 179.97438 * 17 16 15 35 35 H 1.08003 * 120.01013 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.01667 * 0.29643 * 21 15 14 37 37 H 1.09002 * 109.52173 * 182.83676 * 22 14 12 38 38 H 1.09003 * 109.52072 * 303.03221 * 22 14 12 39 39 H 1.09001 * 109.48065 * 297.62471 * 23 22 14 40 40 H 1.08992 * 109.48754 * 177.59724 * 23 22 14 41 41 H 1.09000 * 109.48623 * 301.17931 * 25 24 23 42 42 H 1.09005 * 109.49390 * 181.14560 * 25 24 23 43 43 H 1.09008 * 109.52057 * 182.48277 * 26 25 24 44 44 H 1.08995 * 109.57542 * 62.32831 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0974 1.0964 -2.2416 6 6 3.1260 2.8781 -1.6726 7 7 3.5533 3.6182 -0.6729 8 14 3.4366 3.4178 -3.4337 9 1 2.3063 4.2605 -3.8999 10 1 4.6967 4.2011 -3.4964 11 1 3.5540 2.2209 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3480 -1.1694 0.0948 14 6 1.3901 -2.4696 -0.1193 15 6 0.6219 -2.4929 -1.4157 16 6 1.2707 -2.2308 -2.6082 17 6 0.5686 -2.2575 -3.7986 18 6 -0.7830 -2.5468 -3.7980 19 6 -1.4336 -2.8093 -2.6046 20 9 -2.7546 -3.0926 -2.6029 21 6 -0.7293 -2.7817 -1.4126 22 6 2.3811 -3.6372 -0.0899 23 6 3.1003 -3.6520 1.2615 24 8 2.1363 -3.7536 2.3115 25 6 1.2123 -2.6648 2.3626 26 6 0.4172 -2.6103 1.0553 27 1 -0.3632 -0.0762 1.0249 28 1 -0.3633 0.9256 -0.4464 29 1 -0.3633 -0.8494 -0.5784 30 1 1.6085 2.0283 0.5140 31 1 3.1500 1.1383 0.5138 32 1 4.0295 4.4445 -0.8501 33 1 2.3269 -2.0055 -2.6096 34 1 1.0763 -2.0523 -4.7294 35 1 -1.3314 -2.5671 -4.7282 36 1 -1.2360 -2.9861 -0.4810 37 1 1.8430 -4.5753 -0.2265 38 1 3.1115 -3.5153 -0.8899 39 1 3.6709 -2.7308 1.3797 40 1 3.7760 -4.5061 1.3045 41 1 1.7580 -1.7307 2.4952 42 1 0.5276 -2.8077 3.1987 43 1 -0.2571 -1.7541 1.0745 44 1 -0.1614 -3.5270 0.9414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072028376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:24 Heat of formation + Delta-G solvation = -87.223981 kcal Electronic energy + Delta-G solvation = -29036.274368 eV Core-core repulsion = 25061.655976 eV Total energy + Delta-G solvation = -3974.618392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.91873 -41.23983 -38.57364 -37.80672 -35.12943 -34.40958 -32.58010 -31.25325 -30.46111 -30.04811 -27.92840 -26.47055 -25.18376 -23.92774 -23.24839 -22.30445 -21.80415 -20.68675 -18.33732 -17.73806 -16.60442 -16.43435 -16.26979 -15.98336 -15.75830 -15.67830 -15.56162 -15.22355 -14.95718 -14.46523 -14.22391 -13.93825 -13.64402 -13.30977 -13.19471 -12.99928 -12.59499 -12.42092 -12.22449 -12.01687 -11.91991 -11.75665 -11.59091 -11.34500 -11.16529 -10.99152 -10.95093 -10.61370 -10.51577 -10.32067 -10.21214 -9.73482 -9.52077 -9.07644 -8.79726 -8.50585 -8.48779 -7.69897 -6.09726 -4.14726 1.12023 1.16918 3.18973 3.25444 3.32494 3.35751 3.52788 3.83312 3.99870 4.17563 4.38384 4.47956 4.60950 4.74445 4.88522 4.92914 5.06941 5.08522 5.20024 5.24996 5.30004 5.38561 5.51243 5.60052 5.63170 5.68632 5.74816 5.77920 5.85622 5.92491 5.96947 6.02856 6.06201 6.10806 6.21280 6.29143 6.34287 6.48059 6.85532 6.98410 7.31754 7.37278 7.46114 7.86284 8.17067 8.31485 8.81459 8.97681 9.50478 10.98369 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.005952 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.789634 B = 4703.503496 C = 6324.124968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.590 5.590 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.521 3.479 13 O -0.535 6.535 14 C -0.042 4.042 15 C -0.033 4.033 16 C -0.110 4.110 17 C -0.082 4.082 18 C -0.157 4.157 19 C 0.096 3.904 20 F -0.142 7.142 21 C -0.155 4.155 22 C -0.121 4.121 23 C 0.050 3.950 24 O -0.386 6.386 25 C 0.061 3.939 26 C -0.163 4.163 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 -14.203 -0.375 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.321 5.321 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.306 3.694 13 O -0.413 6.413 14 C -0.045 4.045 15 C -0.033 4.033 16 C -0.128 4.128 17 C -0.100 4.100 18 C -0.176 4.176 19 C 0.077 3.923 20 F -0.121 7.121 21 C -0.174 4.174 22 C -0.159 4.159 23 C -0.027 4.027 24 O -0.305 6.305 25 C -0.016 4.016 26 C -0.201 4.201 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.555 -14.146 -0.144 16.533 hybrid contribution -0.231 0.759 -1.368 1.581 sum -8.786 -13.388 -1.511 16.084 Atomic orbital electron populations 1.22158 0.81861 1.03733 1.00231 1.48046 1.06000 1.07605 1.70424 1.19335 0.92592 0.77932 0.97612 1.21396 1.36540 1.06374 0.92175 0.92424 1.24925 0.95357 0.96383 0.97340 1.69928 1.38317 1.14282 1.30713 0.86526 0.77732 0.78648 0.84706 1.20633 1.21057 1.19893 1.19840 0.87594 0.84391 0.77551 1.90622 1.13788 1.86641 1.50293 1.19877 0.96055 0.95744 0.92829 1.19295 0.92528 0.97365 0.94155 1.21187 1.01236 0.98783 0.91612 1.21004 0.93152 0.97258 0.98610 1.21129 0.95669 1.03682 0.97090 1.17587 0.77831 1.02307 0.94598 1.91487 1.31972 1.91230 1.97409 1.21058 0.94371 1.04400 0.97579 1.21997 0.97987 0.96014 0.99889 1.22862 0.90659 1.03835 0.85311 1.87855 1.44819 1.45426 1.52368 1.22535 0.91724 0.90666 0.96670 1.22723 0.98579 1.04369 0.94404 0.93482 0.90748 0.91066 0.95028 0.93674 0.92676 0.84970 0.84866 0.84921 0.84183 0.90868 0.89881 0.90004 0.89141 0.92827 0.88699 0.88672 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 8.67 59.85 0.52 1.54 16 2 N -0.59 -11.99 2.85 -182.96 -0.52 -12.51 16 3 C 0.24 6.19 5.18 -5.20 -0.03 6.16 16 4 C -0.53 -14.43 9.39 -34.45 -0.32 -14.75 16 5 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.52 10.12 4.46 -10.99 -0.05 10.07 16 13 O -0.54 -12.34 13.41 5.55 0.07 -12.27 16 14 C -0.04 -0.61 0.35 -156.63 -0.05 -0.67 16 15 C -0.03 -0.46 3.16 -104.64 -0.33 -0.79 16 16 C -0.11 -1.62 8.92 -39.58 -0.35 -1.97 16 17 C -0.08 -1.04 10.04 -39.59 -0.40 -1.44 16 18 C -0.16 -1.87 10.03 -39.51 -0.40 -2.26 16 19 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 20 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 21 C -0.16 -1.92 7.29 -39.52 -0.29 -2.21 16 22 C -0.12 -1.69 4.41 -26.59 -0.12 -1.81 16 23 C 0.05 0.72 6.55 37.21 0.24 0.97 16 24 O -0.39 -5.69 10.77 -35.23 -0.38 -6.07 16 25 C 0.06 0.81 6.62 37.21 0.25 1.06 16 26 C -0.16 -2.03 3.42 -26.59 -0.09 -2.12 16 27 H 0.05 0.64 6.86 -51.93 -0.36 0.28 16 28 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 29 H 0.07 1.03 2.96 -51.93 -0.15 0.87 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.05 1.29 7.36 -51.93 -0.38 0.91 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.13 2.15 7.84 -52.48 -0.41 1.74 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.14 1.47 5.90 -52.49 -0.31 1.16 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 39 H 0.08 1.43 5.82 -51.93 -0.30 1.13 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.83 7.38 -51.93 -0.38 0.44 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.11 4.10 -51.92 -0.21 0.89 16 44 H 0.08 0.88 6.96 -51.93 -0.36 0.52 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -31.42 345.55 -7.45 -38.86 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.78 Total: 3.15 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.80 Total: -5.67 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.21 Total: -37.85 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.30 Total: -18.33 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.42 -7.45 -38.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072028376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.361 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds