Wall clock time and date at job start Tue Mar 31 2020 13:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 119.99993 * 2 1 4 4 C 1.50689 * 109.47476 * 270.00226 * 3 2 1 5 5 H 1.07997 * 120.00240 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00252 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99918 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00102 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47193 * 90.00313 * 8 6 4 10 10 H 1.48503 * 109.47023 * 209.99827 * 8 6 4 11 11 H 1.48500 * 109.47197 * 329.99897 * 8 6 4 12 12 C 1.34775 * 120.00050 * 180.02562 * 2 1 3 13 13 O 1.21287 * 120.00190 * 185.20481 * 12 2 1 14 14 C 1.50702 * 120.00103 * 5.19704 * 12 2 1 15 15 C 1.50700 * 109.53748 * 59.97644 * 14 12 2 16 16 C 1.38259 * 119.99044 * 52.57036 * 15 14 12 17 17 C 1.38231 * 120.05436 * 179.72056 * 16 15 14 18 18 C 1.38216 * 120.02161 * 359.97438 * 17 16 15 19 19 C 1.38441 * 119.97527 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02494 * 180.02562 * 19 18 17 21 21 C 1.38177 * 119.98354 * 232.29111 * 15 14 12 22 22 C 1.53181 * 109.61859 * 180.19528 * 14 12 2 23 23 C 1.53096 * 109.16140 * 62.93280 * 22 14 12 24 24 O 1.42904 * 109.41302 * 57.60936 * 23 22 14 25 25 C 1.42899 * 114.09723 * 298.83844 * 24 23 22 26 26 C 1.53101 * 109.41421 * 61.16200 * 25 24 23 27 27 H 1.09005 * 109.46556 * 265.74529 * 1 2 3 28 28 H 1.08996 * 109.47251 * 25.74615 * 1 2 3 29 29 H 1.09000 * 109.47135 * 145.74616 * 1 2 3 30 30 H 1.08998 * 109.47066 * 30.01059 * 3 2 1 31 31 H 1.09006 * 109.46669 * 150.00343 * 3 2 1 32 32 H 0.97000 * 120.00156 * 180.02562 * 7 6 4 33 33 H 1.08003 * 119.97262 * 359.74133 * 16 15 14 34 34 H 1.07996 * 119.98915 * 179.97438 * 17 16 15 35 35 H 1.08003 * 120.01013 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.01667 * 0.29643 * 21 15 14 37 37 H 1.09002 * 109.52173 * 182.83676 * 22 14 12 38 38 H 1.09003 * 109.52072 * 303.03221 * 22 14 12 39 39 H 1.09001 * 109.48065 * 297.62471 * 23 22 14 40 40 H 1.08992 * 109.48754 * 177.59724 * 23 22 14 41 41 H 1.09000 * 109.48623 * 301.17931 * 25 24 23 42 42 H 1.09005 * 109.49390 * 181.14560 * 25 24 23 43 43 H 1.09008 * 109.52057 * 182.48277 * 26 25 24 44 44 H 1.08995 * 109.57542 * 62.32831 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 1 2.0974 1.0964 -2.2416 6 6 3.1260 2.8781 -1.6726 7 7 3.5533 3.6182 -0.6729 8 14 3.4366 3.4178 -3.4337 9 1 2.3063 4.2605 -3.8999 10 1 4.6967 4.2011 -3.4964 11 1 3.5540 2.2209 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3480 -1.1694 0.0948 14 6 1.3901 -2.4696 -0.1193 15 6 0.6219 -2.4929 -1.4157 16 6 1.2707 -2.2308 -2.6082 17 6 0.5686 -2.2575 -3.7986 18 6 -0.7830 -2.5468 -3.7980 19 6 -1.4336 -2.8093 -2.6046 20 9 -2.7546 -3.0926 -2.6029 21 6 -0.7293 -2.7817 -1.4126 22 6 2.3811 -3.6372 -0.0899 23 6 3.1003 -3.6520 1.2615 24 8 2.1363 -3.7536 2.3115 25 6 1.2123 -2.6648 2.3626 26 6 0.4172 -2.6103 1.0553 27 1 -0.3632 -0.0762 1.0249 28 1 -0.3633 0.9256 -0.4464 29 1 -0.3633 -0.8494 -0.5784 30 1 1.6085 2.0283 0.5140 31 1 3.1500 1.1383 0.5138 32 1 4.0295 4.4445 -0.8501 33 1 2.3269 -2.0055 -2.6096 34 1 1.0763 -2.0523 -4.7294 35 1 -1.3314 -2.5671 -4.7282 36 1 -1.2360 -2.9861 -0.4810 37 1 1.8430 -4.5753 -0.2265 38 1 3.1115 -3.5153 -0.8899 39 1 3.6709 -2.7308 1.3797 40 1 3.7760 -4.5061 1.3045 41 1 1.7580 -1.7307 2.4952 42 1 0.5276 -2.8077 3.1987 43 1 -0.2571 -1.7541 1.0745 44 1 -0.1614 -3.5270 0.9414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072028376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:23 Heat of formation + Delta-G solvation = -106.232657 kcal Electronic energy + Delta-G solvation = -29037.098646 eV Core-core repulsion = 25061.655976 eV Total energy + Delta-G solvation = -3975.442670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.87352 -42.49356 -39.69397 -39.17052 -36.77695 -35.69398 -34.56918 -32.37599 -31.48466 -31.09259 -29.83298 -27.84490 -26.60034 -25.05986 -24.94238 -23.38036 -22.88537 -22.07717 -19.75633 -18.87261 -18.61476 -17.64280 -17.36730 -17.31606 -16.97076 -16.79531 -16.65369 -16.58121 -16.36661 -16.08491 -15.54315 -14.94995 -14.90143 -14.71962 -14.48321 -14.13499 -14.05960 -13.79679 -13.60647 -13.37287 -13.20948 -13.12459 -12.96224 -12.80830 -12.71850 -12.55717 -12.27150 -12.22280 -12.05752 -11.72308 -11.59980 -11.47977 -10.79859 -10.65783 -10.35516 -9.88773 -9.63905 -9.39939 -8.23822 -6.38329 0.09933 0.17588 1.34586 1.36925 1.46870 1.71728 2.24905 2.39614 2.54126 2.90801 3.06013 3.14965 3.37081 3.54048 3.58175 3.82038 3.93981 3.95686 4.07106 4.12582 4.26486 4.30532 4.39785 4.44897 4.51450 4.55826 4.63625 4.73476 4.79261 4.82394 4.85251 4.94026 5.00463 5.01877 5.04406 5.08659 5.11561 5.23041 5.31641 5.46325 5.54157 5.80675 5.86938 6.04215 6.19082 6.66993 6.74391 7.25535 7.41996 8.83299 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010400 B = 0.005952 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.789634 B = 4703.503496 C = 6324.124968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.598 5.598 3 C 0.260 3.740 4 C -0.537 4.537 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.516 3.484 13 O -0.583 6.583 14 C -0.032 4.032 15 C -0.043 4.043 16 C -0.132 4.132 17 C -0.085 4.085 18 C -0.150 4.150 19 C 0.094 3.906 20 F -0.140 7.140 21 C -0.147 4.147 22 C -0.118 4.118 23 C 0.051 3.949 24 O -0.389 6.389 25 C 0.056 3.944 26 C -0.159 4.159 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.020 0.980 31 H 0.000 1.000 32 H 0.267 0.733 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.111 0.889 41 H 0.021 0.979 42 H 0.128 0.872 43 H 0.106 0.894 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.107 -15.854 -1.573 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.328 5.328 3 C 0.139 3.861 4 C -0.576 4.576 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.568 5.568 8 Si 0.788 3.212 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.305 3.695 13 O -0.464 6.464 14 C -0.035 4.035 15 C -0.044 4.044 16 C -0.150 4.150 17 C -0.103 4.103 18 C -0.168 4.168 19 C 0.075 3.925 20 F -0.118 7.118 21 C -0.165 4.165 22 C -0.156 4.156 23 C -0.025 4.025 24 O -0.308 6.308 25 C -0.020 4.020 26 C -0.196 4.196 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.038 0.962 31 H 0.018 0.982 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.129 0.871 41 H 0.039 0.961 42 H 0.146 0.854 43 H 0.124 0.876 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.465 -15.817 -1.340 19.581 hybrid contribution 0.669 1.257 -0.974 1.725 sum -10.796 -14.560 -2.314 18.274 Atomic orbital electron populations 1.22419 0.78990 1.04243 1.02548 1.47990 1.07746 1.06266 1.70749 1.18771 0.91053 0.80129 0.96160 1.21646 1.36597 1.06498 0.92858 0.92735 1.25825 0.94976 0.96459 1.01732 1.70052 1.39011 1.14762 1.32992 0.85477 0.77992 0.78368 0.79408 1.19018 1.20766 1.19390 1.20721 0.87327 0.85656 0.75845 1.90599 1.16242 1.87527 1.52033 1.19788 0.96386 0.92571 0.94744 1.19177 0.93271 0.98793 0.93116 1.21144 1.00285 1.00411 0.93180 1.21171 0.93695 0.96954 0.98451 1.21401 0.95188 1.02091 0.98150 1.17676 0.77938 1.02055 0.94817 1.91503 1.31748 1.91163 1.97403 1.21195 0.93276 1.03291 0.98767 1.21998 0.97826 0.96881 0.98871 1.22794 0.90936 1.02881 0.85930 1.87849 1.44931 1.45684 1.52371 1.22701 0.91723 0.89009 0.98605 1.22789 0.98001 1.06447 0.92358 0.90415 0.91691 0.88894 0.96151 0.98221 0.92456 0.87838 0.83359 0.82427 0.81668 0.88097 0.91327 0.93791 0.87060 0.96060 0.85386 0.87571 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.85 8.67 127.77 1.11 2.96 16 2 N -0.60 -24.99 2.85 -851.13 -2.43 -27.42 16 3 C 0.26 13.92 5.18 85.63 0.44 14.36 16 4 C -0.54 -30.48 9.39 25.60 0.24 -30.24 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.52 5.46 84.65 0.46 0.98 16 7 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 8 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 C 0.52 20.81 4.46 87.66 0.39 21.21 16 13 O -0.58 -28.89 13.41 -3.05 -0.04 -28.93 16 14 C -0.03 -0.91 0.35 -53.56 -0.02 -0.93 16 15 C -0.04 -1.13 3.16 -19.87 -0.06 -1.19 16 16 C -0.13 -3.82 8.92 22.27 0.20 -3.62 16 17 C -0.08 -2.00 10.04 22.26 0.22 -1.77 16 18 C -0.15 -3.07 10.03 22.31 0.22 -2.84 16 19 C 0.09 2.01 7.30 22.38 0.16 2.17 16 20 F -0.14 -2.94 17.27 44.97 0.78 -2.16 16 21 C -0.15 -3.09 7.29 22.31 0.16 -2.93 16 22 C -0.12 -3.23 4.41 30.69 0.14 -3.10 16 23 C 0.05 1.50 6.55 72.01 0.47 1.97 16 24 O -0.39 -10.99 10.77 -148.98 -1.60 -12.59 16 25 C 0.06 1.41 6.62 72.02 0.48 1.88 16 26 C -0.16 -3.49 3.42 30.69 0.10 -3.38 16 27 H 0.08 1.93 6.86 -2.38 -0.02 1.91 16 28 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 29 H 0.09 2.46 2.96 -2.39 -0.01 2.45 16 30 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 31 H 0.00 -0.02 7.36 -2.38 -0.02 -0.04 16 32 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.10 3.55 7.84 -2.91 -0.02 3.53 16 34 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.17 2.60 5.90 -2.91 -0.02 2.58 16 37 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.07 2.07 7.89 -2.39 -0.02 2.05 16 39 H 0.04 1.64 5.82 -2.39 -0.01 1.63 16 40 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.02 0.67 7.38 -2.39 -0.02 0.65 16 42 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.11 2.09 4.10 -2.38 -0.01 2.08 16 44 H 0.12 1.87 6.96 -2.39 -0.02 1.86 16 Total: -1.00 -72.08 345.55 4.76 -67.31 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.03 Total: 17.51 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 4.72 Total: -4.47 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.14 Total: -83.02 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.64 Total: -41.53 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -72.08 4.76 -67.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072028376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.922 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds