Wall clock time and date at job start Tue Mar 31 2020 12:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46623 * 2 1 4 4 C 1.46504 * 120.00089 * 269.99728 * 3 2 1 5 5 C 1.50700 * 109.47204 * 270.00546 * 4 3 2 6 6 H 1.07998 * 119.99874 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00252 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99706 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00083 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47011 * 59.99808 * 9 7 5 11 11 H 1.48504 * 109.46788 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47159 * 299.99242 * 9 7 5 13 13 C 1.34780 * 120.00138 * 90.00358 * 3 2 1 14 14 O 1.21589 * 120.00171 * 179.97438 * 13 3 2 15 15 N 1.34773 * 119.99506 * 359.97438 * 13 3 2 16 16 C 1.39940 * 119.99646 * 184.59249 * 15 13 3 17 17 C 1.38926 * 120.04325 * 144.88127 * 16 15 13 18 18 C 1.38128 * 120.04241 * 180.02562 * 17 16 15 19 19 C 1.38212 * 120.12261 * 359.72226 * 18 17 16 20 20 C 1.38766 * 120.08103 * 0.55566 * 19 18 17 21 21 O 1.35903 * 120.01785 * 179.71725 * 20 19 18 22 22 C 1.42905 * 116.99916 * 359.72962 * 21 20 19 23 23 C 1.50694 * 109.46670 * 179.97438 * 22 21 20 24 24 N 1.34780 * 119.99727 * 179.72284 * 23 22 21 25 25 O 1.21281 * 120.00491 * 359.97438 * 23 22 21 26 26 C 1.38625 * 119.96245 * 359.44530 * 20 19 18 27 27 H 1.08994 * 109.47512 * 299.99896 * 1 2 3 28 28 H 1.09010 * 109.47377 * 60.00486 * 1 2 3 29 29 H 1.09006 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46990 * 240.00619 * 2 1 3 31 31 H 1.08996 * 109.47181 * 119.99600 * 2 1 3 32 32 H 1.09002 * 109.47244 * 30.00245 * 4 3 2 33 33 H 1.08999 * 109.47303 * 150.00696 * 4 3 2 34 34 H 0.97002 * 120.00260 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00585 * 4.58893 * 15 13 3 36 36 H 1.07999 * 119.97627 * 0.02562 * 17 16 15 37 37 H 1.07999 * 119.93742 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.95421 * 180.27488 * 19 18 17 39 39 H 1.09004 * 109.46979 * 59.99778 * 22 21 20 40 40 H 1.08996 * 109.46913 * 299.99625 * 22 21 20 41 41 H 0.96999 * 119.99828 * 180.27208 * 24 23 22 42 42 H 0.97006 * 120.00121 * 0.27477 * 24 23 22 43 43 H 1.07995 * 120.06703 * 180.25049 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 3.3493 3.1267 -3.6175 9 14 5.9137 2.0977 -3.4163 10 1 6.1416 0.6411 -3.5942 11 1 6.1611 2.7977 -4.7024 12 1 6.8408 2.6211 -2.3811 13 6 2.2429 2.0166 1.1672 14 8 2.6485 3.1629 1.1672 15 7 2.0178 1.3814 2.3343 16 6 2.1585 2.0703 3.5443 17 6 1.3156 1.7826 4.6105 18 6 1.4541 2.4629 5.8046 19 6 2.4346 3.4270 5.9439 20 6 3.2755 3.7225 4.8804 21 8 4.2355 4.6748 5.0170 22 6 4.3182 5.3359 6.2813 23 6 5.4321 6.3503 6.2456 24 7 5.6933 7.1028 7.3328 25 8 6.0906 6.4927 5.2371 26 6 3.1396 3.0419 3.6805 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.5816 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1384 34 1 3.6753 3.5172 -4.4435 35 1 1.7584 0.4468 2.3357 36 1 0.5516 1.0265 4.5056 37 1 0.7982 2.2376 6.6325 38 1 2.5433 3.9542 6.8803 39 1 4.5198 4.6027 7.0622 40 1 3.3744 5.8394 6.4904 41 1 6.4077 7.7585 7.3086 42 1 5.1669 6.9886 8.1396 43 1 3.7959 3.2677 2.8530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078488258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:45 Heat of formation + Delta-G solvation = -63.321459 kcal Electronic energy + Delta-G solvation = -26635.669764 eV Core-core repulsion = 22682.007825 eV Total energy + Delta-G solvation = -3953.661940 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.60310 -39.93405 -38.99053 -37.28752 -35.37510 -34.16718 -34.04650 -32.64094 -30.70456 -30.12643 -29.25380 -28.24520 -26.79276 -23.50420 -23.05180 -22.52217 -22.02453 -20.81544 -19.32566 -18.69641 -17.91545 -17.36573 -16.75096 -16.50196 -16.37626 -16.05827 -15.83877 -15.37612 -14.95482 -14.53376 -14.38178 -14.12217 -13.70349 -13.65480 -13.51247 -13.23632 -12.94073 -12.60499 -12.37435 -12.03621 -11.79957 -11.76069 -11.34057 -11.16474 -11.13894 -10.91549 -10.76467 -10.48565 -10.20374 -10.08887 -10.06878 -9.95921 -9.61739 -9.19013 -8.37827 -8.24036 -7.98560 -7.59186 -5.99020 -4.03581 1.41753 1.54460 2.28732 2.50339 3.18200 3.37220 3.41848 3.46552 3.66169 3.69445 4.07392 4.40182 4.43401 4.54652 4.65327 4.75455 4.88520 5.05053 5.23421 5.26276 5.35255 5.40802 5.56932 5.62879 5.68188 5.91586 6.02072 6.19867 6.30081 6.35204 6.40525 6.44709 6.50758 6.59267 6.87079 6.88169 7.12177 7.38680 7.47198 7.54571 7.69746 7.91620 7.98693 8.27967 8.59931 8.96763 9.26545 9.61770 11.08907 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.003497 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.578323 B = 8004.196132 C =10253.658792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.606 5.606 4 C 0.261 3.739 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.696 3.304 14 O -0.562 6.562 15 N -0.695 5.695 16 C 0.220 3.780 17 C -0.190 4.190 18 C -0.064 4.064 19 C -0.238 4.238 20 C 0.144 3.856 21 O -0.286 6.286 22 C 0.041 3.959 23 C 0.516 3.484 24 N -0.854 5.854 25 O -0.510 6.510 26 C -0.149 4.149 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.407 0.593 42 H 0.401 0.599 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 -2.083 25.012 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.341 5.341 4 C 0.142 3.858 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.398 3.602 14 O -0.437 6.437 15 N -0.345 5.345 16 C 0.122 3.878 17 C -0.211 4.211 18 C -0.082 4.082 19 C -0.258 4.258 20 C 0.098 3.902 21 O -0.199 6.199 22 C -0.038 4.038 23 C 0.299 3.701 24 N -0.421 5.421 25 O -0.383 6.383 26 C -0.171 4.171 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.241 0.759 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.239 0.761 42 H 0.230 0.770 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.416 -1.137 23.736 24.170 hybrid contribution 0.679 -0.415 0.293 0.848 sum -3.737 -1.552 24.029 24.368 Atomic orbital electron populations 1.22249 0.96662 1.01431 1.02586 1.21371 0.93593 0.84346 1.02430 1.47632 1.66983 1.13261 1.06212 1.19235 0.96219 0.93534 0.76840 1.21418 0.96971 1.32012 1.06245 0.92513 1.24914 0.97816 0.94875 0.96389 1.69917 1.35735 1.33380 1.14382 0.86565 0.84917 0.78155 0.77840 1.20312 1.21193 1.20094 1.15970 0.79260 0.84858 0.80101 1.90929 1.50764 1.16689 1.85341 1.43009 1.73571 1.14256 1.03630 1.17190 0.92443 0.93096 0.85037 1.20768 1.01178 1.05181 0.93986 1.20563 0.96571 0.94455 0.96644 1.21054 1.01200 1.04845 0.98704 1.18770 0.88380 0.88984 0.94030 1.86212 1.51666 1.49579 1.32409 1.22384 0.98607 0.95409 0.87395 1.20148 0.84687 0.81730 0.83509 1.43654 1.40237 1.42546 1.15634 1.90861 1.49385 1.66877 1.31195 1.20649 1.00580 0.98852 0.96989 0.93051 0.91804 0.92113 0.89471 0.92490 0.94775 0.93700 0.92674 0.75943 0.85809 0.85699 0.85932 0.88960 0.88890 0.76073 0.77032 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.66 16 3 N -0.61 -12.97 2.46 -180.80 -0.44 -13.41 16 4 C 0.26 6.90 5.16 -5.19 -0.03 6.88 16 5 C -0.53 -15.23 9.39 -34.44 -0.32 -15.56 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 13 C 0.70 15.19 8.12 -86.92 -0.71 14.48 16 14 O -0.56 -14.87 13.35 5.29 0.07 -14.80 16 15 N -0.69 -11.52 5.21 -14.24 -0.07 -11.59 16 16 C 0.22 3.54 6.30 -83.71 -0.53 3.01 16 17 C -0.19 -2.33 9.96 -39.37 -0.39 -2.73 16 18 C -0.06 -0.67 10.03 -39.63 -0.40 -1.07 16 19 C -0.24 -2.71 9.04 -39.40 -0.36 -3.07 16 20 C 0.14 2.22 6.68 -39.24 -0.26 1.96 16 21 O -0.29 -4.53 9.67 -39.35 -0.38 -4.91 16 22 C 0.04 0.40 5.22 36.00 0.19 0.59 16 23 C 0.52 5.73 8.18 -10.99 -0.09 5.64 16 24 N -0.85 -4.72 8.87 31.22 0.28 -4.45 16 25 O -0.51 -8.88 17.34 -14.35 -0.25 -9.12 16 26 C -0.15 -2.75 8.63 -39.25 -0.34 -3.08 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.06 0.73 6.30 -51.93 -0.33 0.40 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.35 7.42 -51.93 -0.39 0.96 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.40 5.24 6.52 -40.82 -0.27 4.97 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.95 6.29 -52.49 -0.33 0.62 16 39 H 0.09 0.59 7.65 -51.93 -0.40 0.19 16 40 H 0.09 0.64 7.67 -51.93 -0.40 0.24 16 41 H 0.41 1.98 8.93 -40.82 -0.36 1.62 16 42 H 0.40 0.66 8.83 -40.82 -0.36 0.30 16 43 H 0.16 3.48 6.22 -52.49 -0.33 3.15 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -39.83 368.02 -8.16 -48.00 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.65 Total: 5.04 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -2.97 Total: 8.56 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.50 Total: -55.79 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.56 Total: -28.84 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.83 -8.16 -48.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078488258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.326 kcal (2) G-P(sol) polarization free energy of solvation -39.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds