Wall clock time and date at job start Tue Mar 31 2020 12:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46623 * 2 1 4 4 C 1.46504 * 120.00089 * 269.99728 * 3 2 1 5 5 C 1.50700 * 109.47204 * 270.00546 * 4 3 2 6 6 H 1.07998 * 119.99874 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00252 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99706 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00083 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47011 * 59.99808 * 9 7 5 11 11 H 1.48504 * 109.46788 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47159 * 299.99242 * 9 7 5 13 13 C 1.34780 * 120.00138 * 90.00358 * 3 2 1 14 14 O 1.21589 * 120.00171 * 179.97438 * 13 3 2 15 15 N 1.34773 * 119.99506 * 359.97438 * 13 3 2 16 16 C 1.39940 * 119.99646 * 184.59249 * 15 13 3 17 17 C 1.38926 * 120.04325 * 144.88127 * 16 15 13 18 18 C 1.38128 * 120.04241 * 180.02562 * 17 16 15 19 19 C 1.38212 * 120.12261 * 359.72226 * 18 17 16 20 20 C 1.38766 * 120.08103 * 0.55566 * 19 18 17 21 21 O 1.35903 * 120.01785 * 179.71725 * 20 19 18 22 22 C 1.42905 * 116.99916 * 359.72962 * 21 20 19 23 23 C 1.50694 * 109.46670 * 179.97438 * 22 21 20 24 24 N 1.34780 * 119.99727 * 179.72284 * 23 22 21 25 25 O 1.21281 * 120.00491 * 359.97438 * 23 22 21 26 26 C 1.38625 * 119.96245 * 359.44530 * 20 19 18 27 27 H 1.08994 * 109.47512 * 299.99896 * 1 2 3 28 28 H 1.09010 * 109.47377 * 60.00486 * 1 2 3 29 29 H 1.09006 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46990 * 240.00619 * 2 1 3 31 31 H 1.08996 * 109.47181 * 119.99600 * 2 1 3 32 32 H 1.09002 * 109.47244 * 30.00245 * 4 3 2 33 33 H 1.08999 * 109.47303 * 150.00696 * 4 3 2 34 34 H 0.97002 * 120.00260 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00585 * 4.58893 * 15 13 3 36 36 H 1.07999 * 119.97627 * 0.02562 * 17 16 15 37 37 H 1.07999 * 119.93742 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.95421 * 180.27488 * 19 18 17 39 39 H 1.09004 * 109.46979 * 59.99778 * 22 21 20 40 40 H 1.08996 * 109.46913 * 299.99625 * 22 21 20 41 41 H 0.96999 * 119.99828 * 180.27208 * 24 23 22 42 42 H 0.97006 * 120.00121 * 0.27477 * 24 23 22 43 43 H 1.07995 * 120.06703 * 180.25049 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 3.3493 3.1267 -3.6175 9 14 5.9137 2.0977 -3.4163 10 1 6.1416 0.6411 -3.5942 11 1 6.1611 2.7977 -4.7024 12 1 6.8408 2.6211 -2.3811 13 6 2.2429 2.0166 1.1672 14 8 2.6485 3.1629 1.1672 15 7 2.0178 1.3814 2.3343 16 6 2.1585 2.0703 3.5443 17 6 1.3156 1.7826 4.6105 18 6 1.4541 2.4629 5.8046 19 6 2.4346 3.4270 5.9439 20 6 3.2755 3.7225 4.8804 21 8 4.2355 4.6748 5.0170 22 6 4.3182 5.3359 6.2813 23 6 5.4321 6.3503 6.2456 24 7 5.6933 7.1028 7.3328 25 8 6.0906 6.4927 5.2371 26 6 3.1396 3.0419 3.6805 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.5816 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1384 34 1 3.6753 3.5172 -4.4435 35 1 1.7584 0.4468 2.3357 36 1 0.5516 1.0265 4.5056 37 1 0.7982 2.2376 6.6325 38 1 2.5433 3.9542 6.8803 39 1 4.5198 4.6027 7.0622 40 1 3.3744 5.8394 6.4904 41 1 6.4077 7.7585 7.3086 42 1 5.1669 6.9886 8.1396 43 1 3.7959 3.2677 2.8530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078488258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:43 Heat of formation + Delta-G solvation = -95.315967 kcal Electronic energy + Delta-G solvation = -26637.057150 eV Core-core repulsion = 22682.007825 eV Total energy + Delta-G solvation = -3955.049326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.84372 -41.13185 -40.08502 -38.45148 -37.02952 -35.64580 -34.83311 -34.71308 -31.71882 -31.62342 -30.51101 -29.10663 -28.67395 -25.29523 -24.44489 -23.68660 -23.18372 -21.76243 -20.80591 -19.85517 -18.91138 -18.66463 -18.46364 -17.78310 -17.35791 -17.23783 -16.92252 -16.69128 -16.45026 -16.26748 -15.49235 -15.42799 -15.21203 -14.84493 -14.68015 -14.51466 -14.30331 -13.99320 -13.65925 -13.53963 -13.28818 -13.11975 -12.70402 -12.68797 -12.55297 -12.37312 -12.22846 -12.15619 -11.92127 -11.77225 -11.21168 -11.16202 -10.88722 -10.78516 -10.65672 -9.62874 -9.32153 -8.95029 -8.23531 -6.38332 0.35013 0.51419 1.32928 1.38832 1.45128 1.45747 1.61497 1.82765 2.16328 2.37329 2.80882 2.89830 3.03778 3.08333 3.78727 4.00666 4.04854 4.06891 4.13733 4.20610 4.33362 4.36493 4.43646 4.48722 4.62946 4.75707 4.89846 4.95844 5.00885 5.17916 5.33717 5.35958 5.39890 5.43695 5.53884 5.55407 5.78445 5.80208 5.94102 6.04914 6.09708 6.31349 6.52377 6.70072 7.05286 7.25705 7.28615 7.62932 8.82814 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.003497 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.578323 B = 8004.196132 C =10253.658792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.612 5.612 4 C 0.279 3.721 5 C -0.545 4.545 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.965 3.035 10 H -0.256 1.256 11 H -0.275 1.275 12 H -0.285 1.285 13 C 0.691 3.309 14 O -0.622 6.622 15 N -0.674 5.674 16 C 0.191 3.809 17 C -0.178 4.178 18 C -0.048 4.048 19 C -0.219 4.219 20 C 0.130 3.870 21 O -0.334 6.334 22 C 0.033 3.967 23 C 0.511 3.489 24 N -0.822 5.822 25 O -0.591 6.591 26 C -0.197 4.197 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.031 0.969 33 H -0.005 1.005 34 H 0.268 0.732 35 H 0.422 0.578 36 H 0.159 0.841 37 H 0.178 0.822 38 H 0.171 0.829 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.413 0.587 42 H 0.425 0.575 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 -4.141 29.309 30.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.347 5.347 4 C 0.158 3.842 5 C -0.584 4.584 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.789 3.211 10 H -0.180 1.180 11 H -0.200 1.200 12 H -0.211 1.211 13 C 0.393 3.607 14 O -0.501 6.501 15 N -0.325 5.325 16 C 0.095 3.905 17 C -0.198 4.198 18 C -0.067 4.067 19 C -0.238 4.238 20 C 0.085 3.915 21 O -0.247 6.247 22 C -0.044 4.044 23 C 0.296 3.704 24 N -0.389 5.389 25 O -0.470 6.470 26 C -0.219 4.219 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.013 0.987 34 H 0.077 0.923 35 H 0.262 0.738 36 H 0.176 0.824 37 H 0.195 0.805 38 H 0.188 0.812 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.246 0.754 42 H 0.258 0.742 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.145 -3.255 28.159 29.005 hybrid contribution 1.169 0.296 -0.824 1.461 sum -4.975 -2.959 27.335 27.941 Atomic orbital electron populations 1.22164 0.94150 1.03737 1.01788 1.21740 0.95620 0.81129 1.03830 1.47501 1.67322 1.15272 1.04579 1.18631 0.95238 0.91239 0.79112 1.21699 0.98036 1.32153 1.06475 0.93200 1.25820 1.02280 0.94449 0.96438 1.70033 1.37736 1.34052 1.14812 0.85516 0.79071 0.79222 0.77279 1.18049 1.19972 1.21098 1.16194 0.78811 0.84333 0.81385 1.90899 1.53199 1.19611 1.86438 1.42590 1.72728 1.14845 1.02329 1.17502 0.93609 0.93663 0.85709 1.21165 1.00271 1.05447 0.92947 1.21222 0.95965 0.92414 0.97053 1.21560 0.99217 1.04273 0.98735 1.18884 0.89416 0.89011 0.94231 1.86152 1.52310 1.50234 1.36044 1.22835 0.99543 0.95978 0.86077 1.20626 0.84369 0.82059 0.83392 1.43417 1.39757 1.40719 1.14980 1.90835 1.52336 1.69484 1.34365 1.20448 1.02069 1.02217 0.97163 0.92391 0.94088 0.88093 0.90226 0.88925 0.95113 0.98730 0.92342 0.73768 0.82362 0.80460 0.81173 0.84801 0.85374 0.75439 0.74233 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.22 16 2 C 0.10 3.08 5.93 86.38 0.51 3.59 16 3 N -0.61 -27.64 2.46 -844.19 -2.07 -29.71 16 4 C 0.28 15.88 5.16 85.63 0.44 16.33 16 5 C -0.54 -33.19 9.39 25.60 0.24 -32.95 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.56 5.46 84.66 0.46 1.02 16 8 N -0.93 -58.38 13.29 21.45 0.28 -58.10 16 9 Si 0.96 47.59 29.54 68.60 2.03 49.62 16 10 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.28 -14.42 7.11 99.48 0.71 -13.72 16 13 C 0.69 32.20 8.12 179.05 1.45 33.66 16 14 O -0.62 -36.39 13.35 -4.00 -0.05 -36.44 16 15 N -0.67 -22.75 5.21 -317.22 -1.65 -24.40 16 16 C 0.19 6.19 6.30 38.14 0.24 6.43 16 17 C -0.18 -3.71 9.96 22.41 0.22 -3.48 16 18 C -0.05 -0.75 10.03 22.24 0.22 -0.53 16 19 C -0.22 -4.05 9.04 22.39 0.20 -3.85 16 20 C 0.13 4.03 6.68 22.49 0.15 4.18 16 21 O -0.33 -10.99 9.67 -73.43 -0.71 -11.70 16 22 C 0.03 0.58 5.22 71.23 0.37 0.95 16 23 C 0.51 11.19 8.18 87.65 0.72 11.91 16 24 N -0.82 -7.47 8.87 -173.53 -1.54 -9.01 16 25 O -0.59 -22.01 17.34 16.00 0.28 -21.73 16 26 C -0.20 -7.83 8.63 22.49 0.19 -7.63 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 31 H 0.09 2.19 6.30 -2.39 -0.02 2.18 16 32 H 0.03 1.74 8.07 -2.39 -0.02 1.72 16 33 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 34 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.42 10.37 6.52 -92.71 -0.60 9.76 16 36 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.17 1.46 6.29 -2.91 -0.02 1.44 16 39 H 0.13 1.14 7.65 -2.38 -0.02 1.12 16 40 H 0.13 1.27 7.67 -2.39 -0.02 1.25 16 41 H 0.41 3.46 8.93 -92.71 -0.83 2.63 16 42 H 0.42 -0.14 8.83 -92.70 -0.82 -0.96 16 43 H 0.09 4.77 6.22 -2.91 -0.02 4.75 16 Total: -1.00 -102.01 368.02 1.55 -100.46 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -1.17 Total: 14.61 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 6.17 Total: 26.41 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -4.98 Total: -121.22 kcal Atomic # 8 Polarization: -69.39 SS G_CDS: -0.49 Total: -69.87 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -102.01 1.55 -100.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078488258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.142 kcal (2) G-P(sol) polarization free energy of solvation -102.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds