Wall clock time and date at job start Tue Mar 31 2020 12:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47411 * 2 1 4 4 C 1.46496 * 119.99882 * 270.00112 * 3 2 1 5 5 C 1.50699 * 109.46897 * 269.99886 * 4 3 2 6 6 H 1.07995 * 120.00039 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00110 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00375 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99812 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47124 * 90.00220 * 9 7 5 11 11 H 1.48504 * 109.47306 * 210.00011 * 9 7 5 12 12 H 1.48499 * 109.47434 * 330.00263 * 9 7 5 13 13 C 1.34777 * 119.99673 * 89.99666 * 3 2 1 14 14 O 1.21599 * 119.99412 * 180.02562 * 13 3 2 15 15 N 1.34776 * 120.00352 * 0.02562 * 13 3 2 16 16 C 1.40146 * 119.99780 * 184.59206 * 15 13 3 17 17 C 1.38834 * 120.01702 * 144.90653 * 16 15 13 18 18 C 1.38095 * 119.98968 * 180.27074 * 17 16 15 19 19 C 1.38717 * 120.01172 * 359.49945 * 18 17 16 20 20 O 1.35981 * 119.98506 * 180.25510 * 19 18 17 21 21 C 1.42898 * 116.99641 * 0.24313 * 20 19 18 22 22 C 1.50705 * 109.46943 * 180.02562 * 21 20 19 23 23 N 1.34773 * 120.00309 * 179.97438 * 22 21 20 24 24 O 1.21288 * 119.99743 * 0.02562 * 22 21 20 25 25 C 1.38712 * 120.02797 * 0.49962 * 19 18 17 26 26 C 1.38096 * 120.01381 * 359.74857 * 25 19 18 27 27 H 1.08998 * 109.47397 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47086 * 299.99998 * 1 2 3 29 29 H 1.09002 * 109.46886 * 59.99969 * 1 2 3 30 30 H 1.08998 * 109.46953 * 239.99286 * 2 1 3 31 31 H 1.09002 * 109.46886 * 120.00031 * 2 1 3 32 32 H 1.09001 * 109.47294 * 29.99961 * 4 3 2 33 33 H 1.09002 * 109.47013 * 149.99881 * 4 3 2 34 34 H 0.96997 * 120.00589 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99727 * 4.58708 * 15 13 3 36 36 H 1.08011 * 120.00441 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.99282 * 179.72038 * 18 17 16 38 38 H 1.09000 * 109.47715 * 300.00363 * 21 20 19 39 39 H 1.09002 * 109.47510 * 60.00785 * 21 20 19 40 40 H 0.97003 * 119.99598 * 0.02562 * 23 22 21 41 41 H 0.96997 * 119.99812 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.99267 * 179.72911 * 25 19 18 43 43 H 1.07995 * 120.00704 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8774 8 7 5.3915 2.1832 -3.2573 9 14 3.0133 3.4358 -3.9287 10 1 3.1160 4.8559 -3.5068 11 1 3.4070 3.3135 -5.3553 12 1 1.6137 2.9692 -3.7596 13 6 2.2431 2.0165 1.1672 14 8 2.6480 3.1631 1.1672 15 7 2.0188 1.3810 2.3344 16 6 2.1596 2.0709 3.5462 17 6 1.3179 1.7820 4.6118 18 6 1.4535 2.4661 5.8037 19 6 2.4373 3.4345 5.9398 20 8 2.5737 4.1041 7.1155 21 6 1.6733 3.7553 8.1689 22 6 1.9725 4.5950 9.3840 23 7 1.2441 4.4388 10.5071 24 8 2.8682 5.4121 9.3509 25 6 3.2787 3.7236 4.8756 26 6 3.1408 3.0438 3.6815 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 5.7176 2.5736 -4.0832 35 1 1.7599 0.4462 2.3357 36 1 0.5539 1.0257 4.5069 37 1 0.7957 2.2445 6.6312 38 1 0.6482 3.9366 7.8458 39 1 1.7951 2.7008 8.4167 40 1 0.5274 3.7856 10.5334 41 1 1.4364 4.9796 11.2890 42 1 4.0416 4.4808 4.9809 43 1 3.7956 3.2693 2.8529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078488300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:50 Heat of formation + Delta-G solvation = -60.026706 kcal Electronic energy + Delta-G solvation = -26268.716048 eV Core-core repulsion = 22315.196980 eV Total energy + Delta-G solvation = -3953.519068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66764 -40.06259 -39.13560 -37.36599 -35.45958 -34.19508 -34.11384 -32.59356 -31.08023 -30.39144 -29.53565 -28.30376 -27.02925 -23.28556 -23.08786 -22.90357 -21.67737 -21.02958 -19.33440 -18.55019 -18.00252 -17.89812 -16.99879 -16.79625 -16.68186 -16.62295 -15.64905 -15.14651 -14.83048 -14.53969 -14.36006 -14.15915 -13.87689 -13.79975 -13.49855 -13.29466 -12.97048 -12.68164 -12.54078 -12.46049 -12.29309 -11.96808 -11.50322 -11.41419 -11.03304 -10.98050 -10.81321 -10.50227 -10.35100 -10.21552 -10.18250 -9.70757 -9.56871 -9.33240 -8.88763 -8.58023 -7.89264 -7.48512 -6.07798 -4.06597 1.38956 1.45545 2.13042 2.40838 3.10058 3.30497 3.36234 3.38704 3.54296 3.61654 3.99710 4.29706 4.31089 4.40396 4.54768 4.63488 4.80969 4.85452 5.15426 5.24431 5.31486 5.42451 5.47096 5.57561 5.69815 5.86061 5.96963 6.02062 6.08271 6.25157 6.27365 6.31609 6.42396 6.63897 6.68387 6.73699 6.88829 7.06042 7.24518 7.36100 7.48085 7.62656 7.75849 8.44876 8.48145 8.95237 9.14217 9.52407 11.05537 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022010 B = 0.002443 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.836581 B =11459.672172 C =12279.258214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.231 3.769 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.701 3.299 14 O -0.569 6.569 15 N -0.694 5.694 16 C 0.146 3.854 17 C -0.117 4.117 18 C -0.192 4.192 19 C 0.098 3.902 20 O -0.292 6.292 21 C 0.041 3.959 22 C 0.519 3.481 23 N -0.853 5.853 24 O -0.516 6.516 25 C -0.124 4.124 26 C -0.079 4.079 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.403 0.597 41 H 0.408 0.592 42 H 0.134 0.866 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.683 -4.999 23.536 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.337 5.337 4 C 0.110 3.890 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.403 3.597 14 O -0.445 6.445 15 N -0.344 5.344 16 C 0.051 3.949 17 C -0.138 4.138 18 C -0.211 4.211 19 C 0.053 3.947 20 O -0.205 6.205 21 C -0.038 4.038 22 C 0.302 3.698 23 N -0.419 5.419 24 O -0.390 6.390 25 C -0.143 4.143 26 C -0.099 4.099 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.231 0.769 41 H 0.239 0.761 42 H 0.152 0.848 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.487 -3.489 23.059 26.940 hybrid contribution -1.165 -0.340 -0.257 1.240 sum -14.652 -3.829 22.802 27.373 Atomic orbital electron populations 1.22258 0.96657 1.01597 1.02466 1.21395 0.93459 0.83993 1.02873 1.47241 1.67406 1.13392 1.05641 1.19597 0.97269 0.93245 0.78853 1.21344 0.95378 1.32932 1.07112 0.90755 1.24850 0.95001 0.95810 0.97369 1.69892 1.15129 1.44954 1.23554 0.86857 0.81399 0.81690 0.79745 1.19873 1.21116 1.19103 1.15878 0.78981 0.84727 0.80085 1.90890 1.51216 1.16862 1.85511 1.42882 1.73986 1.14047 1.03498 1.17502 0.95529 0.96471 0.85440 1.20589 0.98605 1.01795 0.92810 1.20846 1.01076 1.00080 0.99120 1.18936 0.96661 0.93490 0.85609 1.86163 1.54897 1.60057 1.19421 1.22364 0.95110 0.99387 0.86974 1.20156 0.81904 0.83470 0.84282 1.43663 1.38436 1.44581 1.15267 1.90826 1.30159 1.34966 1.83059 1.20386 1.00689 1.02464 0.90748 1.21376 0.96594 0.94921 0.96995 0.91920 0.92981 0.92003 0.89278 0.92116 0.95090 0.94415 0.92565 0.76183 0.85675 0.85619 0.88981 0.88970 0.76907 0.76058 0.84803 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.24 37.16 0.38 -1.65 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.60 -12.08 2.46 -180.80 -0.44 -12.52 16 4 C 0.23 5.56 4.23 -5.20 -0.02 5.54 16 5 C -0.53 -15.03 9.94 -34.44 -0.34 -15.37 16 6 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 9 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 13 C 0.70 14.32 8.12 -86.92 -0.71 13.62 16 14 O -0.57 -13.94 13.36 5.28 0.07 -13.87 16 15 N -0.69 -10.75 5.22 -14.19 -0.07 -10.82 16 16 C 0.15 2.20 6.30 -83.61 -0.53 1.67 16 17 C -0.12 -1.35 9.96 -39.41 -0.39 -1.74 16 18 C -0.19 -2.03 9.03 -39.46 -0.36 -2.38 16 19 C 0.10 1.27 6.69 -39.23 -0.26 1.01 16 20 O -0.29 -3.72 9.67 -39.59 -0.38 -4.10 16 21 C 0.04 0.31 5.22 36.01 0.19 0.50 16 22 C 0.52 4.55 8.18 -10.98 -0.09 4.46 16 23 N -0.85 -3.16 8.87 31.22 0.28 -2.89 16 24 O -0.52 -7.45 17.34 -14.36 -0.25 -7.70 16 25 C -0.12 -1.84 9.98 -39.46 -0.39 -2.23 16 26 C -0.08 -1.31 8.69 -39.41 -0.34 -1.65 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.06 0.73 6.30 -51.93 -0.33 0.40 16 32 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.40 4.86 6.52 -40.82 -0.27 4.60 16 36 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.13 0.85 6.29 -52.49 -0.33 0.52 16 38 H 0.09 0.47 7.65 -51.93 -0.40 0.07 16 39 H 0.09 0.44 7.67 -51.93 -0.40 0.05 16 40 H 0.40 0.05 8.83 -40.82 -0.36 -0.31 16 41 H 0.41 1.24 8.93 -40.82 -0.36 0.87 16 42 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.15 3.01 6.22 -52.49 -0.33 2.68 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -39.04 364.43 -7.81 -46.85 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.62 Total: 4.23 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -2.99 Total: 5.31 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.53 Total: -53.04 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.56 Total: -25.67 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.04 -7.81 -46.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078488300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.177 kcal (2) G-P(sol) polarization free energy of solvation -39.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds