Wall clock time and date at job start Tue Mar 31 2020 12:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47411 * 2 1 4 4 C 1.46496 * 119.99882 * 270.00112 * 3 2 1 5 5 C 1.50699 * 109.46897 * 269.99886 * 4 3 2 6 6 H 1.07995 * 120.00039 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00110 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00375 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99812 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47124 * 90.00220 * 9 7 5 11 11 H 1.48504 * 109.47306 * 210.00011 * 9 7 5 12 12 H 1.48499 * 109.47434 * 330.00263 * 9 7 5 13 13 C 1.34777 * 119.99673 * 89.99666 * 3 2 1 14 14 O 1.21599 * 119.99412 * 180.02562 * 13 3 2 15 15 N 1.34776 * 120.00352 * 0.02562 * 13 3 2 16 16 C 1.40146 * 119.99780 * 184.59206 * 15 13 3 17 17 C 1.38834 * 120.01702 * 144.90653 * 16 15 13 18 18 C 1.38095 * 119.98968 * 180.27074 * 17 16 15 19 19 C 1.38717 * 120.01172 * 359.49945 * 18 17 16 20 20 O 1.35981 * 119.98506 * 180.25510 * 19 18 17 21 21 C 1.42898 * 116.99641 * 0.24313 * 20 19 18 22 22 C 1.50705 * 109.46943 * 180.02562 * 21 20 19 23 23 N 1.34773 * 120.00309 * 179.97438 * 22 21 20 24 24 O 1.21288 * 119.99743 * 0.02562 * 22 21 20 25 25 C 1.38712 * 120.02797 * 0.49962 * 19 18 17 26 26 C 1.38096 * 120.01381 * 359.74857 * 25 19 18 27 27 H 1.08998 * 109.47397 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47086 * 299.99998 * 1 2 3 29 29 H 1.09002 * 109.46886 * 59.99969 * 1 2 3 30 30 H 1.08998 * 109.46953 * 239.99286 * 2 1 3 31 31 H 1.09002 * 109.46886 * 120.00031 * 2 1 3 32 32 H 1.09001 * 109.47294 * 29.99961 * 4 3 2 33 33 H 1.09002 * 109.47013 * 149.99881 * 4 3 2 34 34 H 0.96997 * 120.00589 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99727 * 4.58708 * 15 13 3 36 36 H 1.08011 * 120.00441 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.99282 * 179.72038 * 18 17 16 38 38 H 1.09000 * 109.47715 * 300.00363 * 21 20 19 39 39 H 1.09002 * 109.47510 * 60.00785 * 21 20 19 40 40 H 0.97003 * 119.99598 * 0.02562 * 23 22 21 41 41 H 0.96997 * 119.99812 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.99267 * 179.72911 * 25 19 18 43 43 H 1.07995 * 120.00704 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8774 8 7 5.3915 2.1832 -3.2573 9 14 3.0133 3.4358 -3.9287 10 1 3.1160 4.8559 -3.5068 11 1 3.4070 3.3135 -5.3553 12 1 1.6137 2.9692 -3.7596 13 6 2.2431 2.0165 1.1672 14 8 2.6480 3.1631 1.1672 15 7 2.0188 1.3810 2.3344 16 6 2.1596 2.0709 3.5462 17 6 1.3179 1.7820 4.6118 18 6 1.4535 2.4661 5.8037 19 6 2.4373 3.4345 5.9398 20 8 2.5737 4.1041 7.1155 21 6 1.6733 3.7553 8.1689 22 6 1.9725 4.5950 9.3840 23 7 1.2441 4.4388 10.5071 24 8 2.8682 5.4121 9.3509 25 6 3.2787 3.7236 4.8756 26 6 3.1408 3.0438 3.6815 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 5.7176 2.5736 -4.0832 35 1 1.7599 0.4462 2.3357 36 1 0.5539 1.0257 4.5069 37 1 0.7957 2.2445 6.6312 38 1 0.6482 3.9366 7.8458 39 1 1.7951 2.7008 8.4167 40 1 0.5274 3.7856 10.5334 41 1 1.4364 4.9796 11.2890 42 1 4.0416 4.4808 4.9809 43 1 3.7956 3.2693 2.8529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078488300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:49 Heat of formation + Delta-G solvation = -91.172764 kcal Electronic energy + Delta-G solvation = -26270.066643 eV Core-core repulsion = 22315.196980 eV Total energy + Delta-G solvation = -3954.869663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.80462 -41.11571 -40.07115 -38.44962 -36.98606 -35.52539 -34.77056 -34.62300 -32.09325 -31.81901 -30.58803 -29.49902 -28.38266 -24.79643 -24.35645 -24.07295 -22.88536 -21.81625 -20.69464 -19.46892 -19.23367 -19.05066 -18.62094 -18.12238 -17.37211 -17.29771 -16.74815 -16.65778 -16.37388 -15.75563 -15.41081 -15.30305 -15.24597 -14.86318 -14.76806 -14.49477 -14.32594 -13.89923 -13.84667 -13.57819 -13.49962 -13.37330 -13.16458 -12.59077 -12.42526 -12.33868 -12.04677 -11.96428 -11.93891 -11.73132 -11.10149 -11.06826 -10.83122 -10.78896 -10.71848 -9.95762 -9.48715 -8.63531 -8.32669 -6.37460 0.36930 0.38765 1.32822 1.38226 1.45692 1.51238 1.69574 1.79960 2.17979 2.31907 2.84697 2.89641 2.98974 3.04351 3.78423 3.95108 4.00031 4.06535 4.14251 4.19452 4.30074 4.37981 4.43172 4.54448 4.64464 4.75625 4.83726 4.92495 4.99795 5.00540 5.08000 5.28199 5.36629 5.40346 5.47457 5.54975 5.63275 5.82048 5.92419 6.04257 6.28502 6.33133 6.51336 6.63821 7.04796 7.24225 7.29324 7.63332 8.84298 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022010 B = 0.002443 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.836581 B =11459.672172 C =12279.258214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.610 5.610 4 C 0.242 3.758 5 C -0.534 4.534 6 H 0.027 0.973 7 C 0.009 3.991 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.275 1.275 12 H -0.235 1.235 13 C 0.693 3.307 14 O -0.622 6.622 15 N -0.672 5.672 16 C 0.118 3.882 17 C -0.093 4.093 18 C -0.173 4.173 19 C 0.105 3.895 20 O -0.323 6.323 21 C 0.031 3.969 22 C 0.514 3.486 23 N -0.824 5.824 24 O -0.588 6.588 25 C -0.148 4.148 26 C -0.105 4.105 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.018 0.982 34 H 0.268 0.732 35 H 0.420 0.580 36 H 0.170 0.830 37 H 0.181 0.819 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.424 0.576 41 H 0.413 0.587 42 H 0.120 0.880 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.508 -7.124 25.774 33.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.344 5.344 4 C 0.119 3.881 5 C -0.573 4.573 6 H 0.045 0.955 7 C -0.189 4.189 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.158 1.158 13 C 0.395 3.605 14 O -0.502 6.502 15 N -0.324 5.324 16 C 0.023 3.977 17 C -0.114 4.114 18 C -0.192 4.192 19 C 0.059 3.941 20 O -0.236 6.236 21 C -0.047 4.047 22 C 0.299 3.701 23 N -0.391 5.391 24 O -0.467 6.467 25 C -0.168 4.168 26 C -0.126 4.126 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.260 0.740 36 H 0.187 0.813 37 H 0.198 0.802 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.257 0.743 41 H 0.245 0.755 42 H 0.138 0.862 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.407 -5.727 25.387 31.877 hybrid contribution 0.368 0.267 -0.689 0.826 sum -18.039 -5.460 24.698 31.067 Atomic orbital electron populations 1.22167 0.93649 1.03785 1.02192 1.21751 0.95832 0.81023 1.03810 1.47223 1.67627 1.15294 1.04291 1.19221 0.94719 0.92799 0.81314 1.21585 0.97173 1.31964 1.06554 0.95485 1.25863 0.96751 0.97243 0.99044 1.70052 1.17462 1.46627 1.24480 0.85713 0.80601 0.78875 0.77715 1.20513 1.20015 1.15769 1.16146 0.78648 0.84341 0.81325 1.90862 1.53378 1.19473 1.86485 1.42505 1.73063 1.14618 1.02188 1.17749 0.96661 0.97066 0.86235 1.21008 0.97610 1.01542 0.91203 1.21380 0.99991 0.97655 1.00132 1.18932 0.96377 0.93639 0.85140 1.86133 1.56780 1.60592 1.20125 1.22828 0.95745 1.01112 0.85024 1.20545 0.81263 0.82708 0.85606 1.43466 1.37604 1.44160 1.13903 1.90808 1.33449 1.38130 1.84348 1.20293 1.01949 1.02929 0.91606 1.21035 0.97758 0.97301 0.96511 0.88388 0.92173 0.93368 0.90390 0.89290 0.92793 0.96429 0.92339 0.74012 0.81296 0.80211 0.85448 0.85135 0.74349 0.75451 0.86214 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 10.24 71.98 0.74 -2.50 16 2 C 0.10 2.73 5.93 86.38 0.51 3.24 16 3 N -0.61 -24.71 2.46 -844.18 -2.07 -26.78 16 4 C 0.24 11.86 4.23 85.63 0.36 12.22 16 5 C -0.53 -31.78 9.94 25.60 0.25 -31.52 16 6 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 7 C 0.01 0.53 5.47 84.66 0.46 0.99 16 8 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 9 Si 0.95 45.03 27.47 68.60 1.88 46.91 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.23 -9.87 6.54 99.48 0.65 -9.22 16 13 C 0.69 29.16 8.12 179.05 1.45 30.61 16 14 O -0.62 -32.61 13.36 -4.03 -0.05 -32.66 16 15 N -0.67 -20.32 5.22 -317.06 -1.66 -21.97 16 16 C 0.12 3.45 6.30 38.10 0.24 3.69 16 17 C -0.09 -1.73 9.96 22.38 0.22 -1.51 16 18 C -0.17 -2.79 9.03 22.35 0.20 -2.59 16 19 C 0.10 2.54 6.69 22.50 0.15 2.69 16 20 O -0.32 -7.71 9.67 -74.30 -0.72 -8.43 16 21 C 0.03 0.34 5.22 71.24 0.37 0.71 16 22 C 0.51 7.93 8.18 87.66 0.72 8.64 16 23 N -0.82 -3.48 8.87 -173.53 -1.54 -5.02 16 24 O -0.59 -17.10 17.34 15.98 0.28 -16.83 16 25 C -0.15 -4.70 9.98 22.35 0.22 -4.47 16 26 C -0.11 -3.78 8.69 22.38 0.19 -3.58 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.09 1.93 6.30 -2.39 -0.02 1.91 16 32 H 0.05 2.39 7.13 -2.39 -0.02 2.38 16 33 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 34 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 35 H 0.42 9.08 6.52 -92.71 -0.60 8.47 16 36 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.18 0.97 6.29 -2.91 -0.02 0.95 16 38 H 0.13 0.54 7.65 -2.39 -0.02 0.52 16 39 H 0.13 0.46 7.67 -2.39 -0.02 0.45 16 40 H 0.42 -1.83 8.83 -92.71 -0.82 -2.65 16 41 H 0.41 1.49 8.93 -92.71 -0.83 0.66 16 42 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.11 4.80 6.22 -2.91 -0.02 4.78 16 Total: -1.00 -96.87 364.43 1.30 -95.57 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -1.23 Total: 13.00 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 6.11 Total: 16.62 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -4.97 Total: -114.19 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -0.50 Total: -57.92 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -96.87 1.30 -95.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078488300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.402 kcal (2) G-P(sol) polarization free energy of solvation -96.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds