Wall clock time and date at job start Tue Mar 31 2020 12:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21301 * 120.00079 * 2 1 4 4 C 1.46784 * 119.99722 * 179.97438 * 2 1 3 5 5 C 1.40034 * 120.21153 * 359.97438 * 4 2 1 6 6 C 1.37870 * 119.85281 * 180.02562 * 5 4 2 7 7 F 1.35105 * 119.85593 * 179.97438 * 6 5 4 8 8 C 1.38806 * 120.28910 * 359.72842 * 6 5 4 9 9 C 1.38053 * 120.42705 * 0.55023 * 8 6 5 10 10 C 1.50701 * 119.92698 * 179.72520 * 9 8 6 11 11 N 1.46508 * 109.47172 * 259.72431 * 10 9 8 12 12 C 1.36933 * 120.00006 * 270.00593 * 11 10 9 13 13 H 1.08001 * 119.99568 * 140.26894 * 12 11 10 14 14 C 1.38807 * 120.00051 * 320.25804 * 12 11 10 15 15 N 1.31619 * 120.00153 * 340.95476 * 14 12 11 16 16 Si 1.86804 * 119.99952 * 160.94911 * 14 12 11 17 17 H 1.48504 * 109.46973 * 90.00602 * 16 14 12 18 18 H 1.48502 * 109.47243 * 210.00402 * 16 14 12 19 19 H 1.48499 * 109.47023 * 330.00566 * 16 14 12 20 20 C 1.46502 * 119.99468 * 90.00058 * 11 10 9 21 21 C 1.55230 * 110.58134 * 240.07516 * 20 11 10 22 22 C 1.54893 * 102.59031 * 203.34264 * 21 20 11 23 23 C 1.54262 * 104.30969 * 37.92995 * 22 21 20 24 24 C 1.53870 * 106.60452 * 336.32577 * 23 22 21 25 25 C 1.38671 * 120.14224 * 359.45042 * 9 8 6 26 26 O 1.35631 * 120.14793 * 180.29368 * 25 9 8 27 27 H 1.08997 * 109.47546 * 270.00551 * 1 2 3 28 28 H 1.09005 * 109.47277 * 30.00190 * 1 2 3 29 29 H 1.08994 * 109.47326 * 149.99750 * 1 2 3 30 30 H 1.08004 * 120.07542 * 0.02562 * 5 4 2 31 31 H 1.08004 * 119.78947 * 180.27934 * 8 6 5 32 32 H 1.09002 * 109.46984 * 139.72832 * 10 9 8 33 33 H 1.08998 * 109.47795 * 19.73039 * 10 9 8 34 34 H 0.97003 * 120.00150 * 179.97438 * 15 14 12 35 35 H 1.08999 * 110.43560 * 2.66162 * 20 11 10 36 36 H 1.09000 * 110.90018 * 85.04938 * 21 20 11 37 37 H 1.08999 * 110.76747 * 321.57345 * 21 20 11 38 38 H 1.09000 * 110.48533 * 279.19036 * 22 21 20 39 39 H 1.08994 * 110.48585 * 156.67752 * 22 21 20 40 40 H 1.09004 * 110.02882 * 95.61382 * 23 22 21 41 41 H 1.09000 * 110.03322 * 216.98681 * 23 22 21 42 42 H 1.09006 * 110.03407 * 119.28191 * 24 23 22 43 43 H 1.08991 * 110.03629 * 240.66804 * 24 23 22 44 44 H 0.96699 * 114.00141 * 90.00260 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 0.0006 5 6 1.5451 -2.4865 0.0017 6 6 2.2419 -3.6762 0.0027 7 9 1.5707 -4.8487 0.0043 8 6 3.6299 -3.6746 -0.0030 9 6 4.3277 -2.4834 0.0017 10 6 5.8347 -2.4948 0.0017 11 7 6.3249 -2.2574 1.3618 12 6 6.5627 -0.9789 1.7904 13 1 6.2988 -0.6889 2.7968 14 6 7.1430 -0.0556 0.9316 15 7 7.7997 -0.4681 -0.1318 16 14 6.9919 1.7725 1.2851 17 1 8.1342 2.2099 2.1272 18 1 7.0026 2.5266 0.0059 19 1 5.7187 2.0341 2.0034 20 6 6.5604 -3.3881 2.2632 21 6 5.6741 -3.2683 3.5319 22 6 6.4512 -4.1178 4.5681 23 6 7.9350 -3.8188 4.2703 24 6 8.0046 -3.3549 2.8049 25 6 3.6450 -1.2764 0.0006 26 8 4.3304 -0.1061 -0.0008 27 1 -0.3634 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 0.4651 -2.4919 0.0017 31 1 4.1676 -4.6113 -0.0067 32 1 6.2040 -1.7109 -0.6595 33 1 6.1908 -3.4635 -0.3490 34 1 8.2050 0.1771 -0.7321 35 1 6.3669 -4.3303 1.7505 36 1 4.6832 -3.6865 3.3549 37 1 5.6040 -2.2306 3.8579 38 1 6.2401 -5.1779 4.4276 39 1 6.1960 -3.8100 5.5820 40 1 8.2964 -3.0295 4.9295 41 1 8.5321 -4.7206 4.4060 42 1 8.3997 -2.3403 2.7527 43 1 8.6359 -4.0311 2.2286 44 1 4.5289 0.2324 -0.8846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079443208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:38 Heat of formation + Delta-G solvation = -82.872612 kcal Electronic energy + Delta-G solvation = -28555.970709 eV Core-core repulsion = 24581.541006 eV Total energy + Delta-G solvation = -3974.429703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.63518 -39.96900 -38.21702 -37.44877 -35.85546 -34.46847 -32.18098 -30.92347 -29.57787 -28.81326 -27.86555 -26.75055 -25.64475 -23.73746 -22.62362 -21.10671 -19.84269 -19.31581 -19.13753 -17.79402 -17.00944 -16.58357 -16.17647 -15.48859 -15.36519 -15.07743 -14.99428 -14.74099 -14.56338 -14.31919 -14.11990 -13.50897 -13.34572 -13.10380 -12.73692 -12.57947 -12.50072 -12.15784 -12.03889 -11.65571 -11.40599 -11.18477 -11.02627 -10.90959 -10.57884 -10.56723 -10.37944 -10.30996 -10.19494 -10.11158 -9.98813 -9.71173 -9.49152 -9.23589 -8.64652 -8.40989 -7.98518 -6.55053 -5.79357 -3.35157 0.85242 1.49362 2.63610 3.41833 3.50542 3.65007 3.85383 4.17471 4.53319 4.56344 4.73549 5.01459 5.06767 5.23814 5.31837 5.33696 5.40004 5.41129 5.47989 5.57886 5.61371 5.75469 5.87851 6.04721 6.13593 6.19616 6.20918 6.23620 6.26374 6.33741 6.40928 6.48156 6.55281 6.59576 6.64212 6.81953 6.99084 7.03783 7.06670 7.13751 7.36816 7.48924 7.77561 7.87775 8.38594 8.54009 9.17636 9.80501 10.35990 11.21548 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010127 B = 0.006506 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.172059 B = 4302.764695 C = 6087.171615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.391 3.609 3 O -0.439 6.439 4 C -0.190 4.190 5 C -0.120 4.120 6 C 0.065 3.935 7 F -0.148 7.148 8 C -0.114 4.114 9 C -0.092 4.092 10 C 0.180 3.820 11 N -0.560 5.560 12 C -0.233 4.233 13 H 0.055 0.945 14 C 0.034 3.966 15 N -0.890 5.890 16 Si 0.895 3.105 17 H -0.295 1.295 18 H -0.291 1.291 19 H -0.273 1.273 20 C 0.173 3.827 21 C -0.135 4.135 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.130 4.130 25 C 0.188 3.812 26 O -0.443 6.443 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.037 0.963 34 H 0.253 0.747 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 -6.082 -0.625 11.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.268 3.732 3 O -0.313 6.313 4 C -0.192 4.192 5 C -0.140 4.140 6 C 0.046 3.954 7 F -0.126 7.126 8 C -0.134 4.134 9 C -0.096 4.096 10 C 0.054 3.946 11 N -0.276 5.276 12 C -0.362 4.362 13 H 0.073 0.927 14 C -0.166 4.166 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.222 1.222 18 H -0.217 1.217 19 H -0.198 1.198 20 C 0.066 3.934 21 C -0.175 4.175 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.169 4.169 25 C 0.141 3.859 26 O -0.253 6.253 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.126 0.874 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -9.574 -5.492 -0.150 11.038 hybrid contribution -0.389 0.609 -0.199 0.749 sum -9.963 -4.883 -0.350 11.101 Atomic orbital electron populations 1.22226 0.94477 1.04380 1.04462 1.22168 0.91133 0.87644 0.72212 1.90604 1.71840 1.33797 1.35086 1.20728 0.94193 0.94458 1.09785 1.20995 0.99959 0.90209 1.02844 1.17490 0.90287 0.80848 1.06775 1.91457 1.80598 1.46100 1.94493 1.21161 0.91572 0.99475 1.01212 1.21691 1.01565 0.90512 0.95843 1.20003 0.83304 1.01039 0.90263 1.43751 1.71684 1.02096 1.10102 1.18721 1.32967 0.85895 0.98620 0.92696 1.24993 0.95462 0.98197 0.97918 1.69965 1.34334 1.33166 1.15730 0.86428 0.77892 0.85805 0.77357 1.22213 1.21717 1.19804 1.21329 0.92103 0.89922 0.90080 1.22952 0.97663 1.00019 0.96842 1.22272 0.95998 0.99145 0.98617 1.22067 0.95921 0.99632 0.98188 1.22477 0.98697 1.02557 0.93183 1.18586 0.87526 0.86968 0.92865 1.84986 1.74558 1.34424 1.31290 0.88832 0.89750 0.89848 0.84653 0.85073 0.87387 0.94478 0.93667 0.93235 0.93417 0.91004 0.92773 0.92994 0.92727 0.93344 0.89627 0.93703 0.76220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 9.75 36.01 0.35 -1.70 16 2 C 0.39 6.06 7.22 -30.86 -0.22 5.84 16 3 O -0.44 -8.47 15.91 -16.39 -0.26 -8.73 16 4 C -0.19 -3.09 5.88 -104.95 -0.62 -3.71 16 5 C -0.12 -1.69 9.33 -39.04 -0.36 -2.06 16 6 C 0.07 0.99 7.28 -39.51 -0.29 0.70 16 7 F -0.15 -2.17 17.26 2.25 0.04 -2.13 16 8 C -0.11 -1.86 9.63 -39.44 -0.38 -2.24 16 9 C -0.09 -1.71 5.47 -104.53 -0.57 -2.28 16 10 C 0.18 3.79 5.08 -5.19 -0.03 3.76 16 11 N -0.56 -12.59 2.43 -164.92 -0.40 -12.99 16 12 C -0.23 -5.87 6.85 -15.06 -0.10 -5.97 16 13 H 0.06 1.48 6.72 -52.49 -0.35 1.12 16 14 C 0.03 0.88 3.97 -17.43 -0.07 0.82 16 15 N -0.89 -23.40 11.48 55.49 0.64 -22.76 16 16 Si 0.90 21.80 29.03 -169.99 -4.94 16.87 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.17 3.44 3.39 -66.08 -0.22 3.21 16 21 C -0.14 -2.51 6.47 -24.55 -0.16 -2.67 16 22 C -0.12 -1.92 6.82 -25.07 -0.17 -2.09 16 23 C -0.12 -1.96 6.80 -25.62 -0.17 -2.13 16 24 C -0.13 -2.52 6.41 -25.61 -0.16 -2.69 16 25 C 0.19 3.57 6.70 -38.60 -0.26 3.31 16 26 O -0.44 -9.29 8.24 -40.52 -0.33 -9.63 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.68 6.47 -51.93 -0.34 0.34 16 30 H 0.14 1.46 6.36 -52.48 -0.33 1.13 16 31 H 0.13 1.95 8.02 -52.48 -0.42 1.53 16 32 H 0.11 2.54 5.29 -51.93 -0.27 2.27 16 33 H 0.04 0.74 7.77 -51.93 -0.40 0.33 16 34 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.50 6.63 -51.93 -0.34 1.15 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 1.95 6.92 -51.93 -0.36 1.59 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.38 7.00 9.06 45.56 0.41 7.41 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -28.59 357.27 -8.65 -37.24 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.34 Total: 6.63 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.44 Total: -9.89 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.24 Total: -35.75 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.59 Total: -18.35 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.94 Total: 16.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.59 -8.65 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079443208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.633 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds