Wall clock time and date at job start Tue Mar 31 2020 12:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21301 * 120.00079 * 2 1 4 4 C 1.46784 * 119.99722 * 179.97438 * 2 1 3 5 5 C 1.40034 * 120.21153 * 359.97438 * 4 2 1 6 6 C 1.37870 * 119.85281 * 180.02562 * 5 4 2 7 7 F 1.35105 * 119.85593 * 179.97438 * 6 5 4 8 8 C 1.38806 * 120.28910 * 359.72842 * 6 5 4 9 9 C 1.38053 * 120.42705 * 0.55023 * 8 6 5 10 10 C 1.50701 * 119.92698 * 179.72520 * 9 8 6 11 11 N 1.46508 * 109.47172 * 259.72431 * 10 9 8 12 12 C 1.36933 * 120.00006 * 270.00593 * 11 10 9 13 13 H 1.08001 * 119.99568 * 140.26894 * 12 11 10 14 14 C 1.38807 * 120.00051 * 320.25804 * 12 11 10 15 15 N 1.31619 * 120.00153 * 340.95476 * 14 12 11 16 16 Si 1.86804 * 119.99952 * 160.94911 * 14 12 11 17 17 H 1.48504 * 109.46973 * 90.00602 * 16 14 12 18 18 H 1.48502 * 109.47243 * 210.00402 * 16 14 12 19 19 H 1.48499 * 109.47023 * 330.00566 * 16 14 12 20 20 C 1.46502 * 119.99468 * 90.00058 * 11 10 9 21 21 C 1.55230 * 110.58134 * 240.07516 * 20 11 10 22 22 C 1.54893 * 102.59031 * 203.34264 * 21 20 11 23 23 C 1.54262 * 104.30969 * 37.92995 * 22 21 20 24 24 C 1.53870 * 106.60452 * 336.32577 * 23 22 21 25 25 C 1.38671 * 120.14224 * 359.45042 * 9 8 6 26 26 O 1.35631 * 120.14793 * 180.29368 * 25 9 8 27 27 H 1.08997 * 109.47546 * 270.00551 * 1 2 3 28 28 H 1.09005 * 109.47277 * 30.00190 * 1 2 3 29 29 H 1.08994 * 109.47326 * 149.99750 * 1 2 3 30 30 H 1.08004 * 120.07542 * 0.02562 * 5 4 2 31 31 H 1.08004 * 119.78947 * 180.27934 * 8 6 5 32 32 H 1.09002 * 109.46984 * 139.72832 * 10 9 8 33 33 H 1.08998 * 109.47795 * 19.73039 * 10 9 8 34 34 H 0.97003 * 120.00150 * 179.97438 * 15 14 12 35 35 H 1.08999 * 110.43560 * 2.66162 * 20 11 10 36 36 H 1.09000 * 110.90018 * 85.04938 * 21 20 11 37 37 H 1.08999 * 110.76747 * 321.57345 * 21 20 11 38 38 H 1.09000 * 110.48533 * 279.19036 * 22 21 20 39 39 H 1.08994 * 110.48585 * 156.67752 * 22 21 20 40 40 H 1.09004 * 110.02882 * 95.61382 * 23 22 21 41 41 H 1.09000 * 110.03322 * 216.98681 * 23 22 21 42 42 H 1.09006 * 110.03407 * 119.28191 * 24 23 22 43 43 H 1.08991 * 110.03629 * 240.66804 * 24 23 22 44 44 H 0.96699 * 114.00141 * 90.00260 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 0.0006 5 6 1.5451 -2.4865 0.0017 6 6 2.2419 -3.6762 0.0027 7 9 1.5707 -4.8487 0.0043 8 6 3.6299 -3.6746 -0.0030 9 6 4.3277 -2.4834 0.0017 10 6 5.8347 -2.4948 0.0017 11 7 6.3249 -2.2574 1.3618 12 6 6.5627 -0.9789 1.7904 13 1 6.2988 -0.6889 2.7968 14 6 7.1430 -0.0556 0.9316 15 7 7.7997 -0.4681 -0.1318 16 14 6.9919 1.7725 1.2851 17 1 8.1342 2.2099 2.1272 18 1 7.0026 2.5266 0.0059 19 1 5.7187 2.0341 2.0034 20 6 6.5604 -3.3881 2.2632 21 6 5.6741 -3.2683 3.5319 22 6 6.4512 -4.1178 4.5681 23 6 7.9350 -3.8188 4.2703 24 6 8.0046 -3.3549 2.8049 25 6 3.6450 -1.2764 0.0006 26 8 4.3304 -0.1061 -0.0008 27 1 -0.3634 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 0.4651 -2.4919 0.0017 31 1 4.1676 -4.6113 -0.0067 32 1 6.2040 -1.7109 -0.6595 33 1 6.1908 -3.4635 -0.3490 34 1 8.2050 0.1771 -0.7321 35 1 6.3669 -4.3303 1.7505 36 1 4.6832 -3.6865 3.3549 37 1 5.6040 -2.2306 3.8579 38 1 6.2401 -5.1779 4.4276 39 1 6.1960 -3.8100 5.5820 40 1 8.2964 -3.0295 4.9295 41 1 8.5321 -4.7206 4.4060 42 1 8.3997 -2.3403 2.7527 43 1 8.6359 -4.0311 2.2286 44 1 4.5289 0.2324 -0.8846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079443208.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:37 Heat of formation + Delta-G solvation = -97.582495 kcal Electronic energy + Delta-G solvation = -28556.608578 eV Core-core repulsion = 24581.541006 eV Total energy + Delta-G solvation = -3975.067571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.83078 -41.30279 -39.63196 -38.90941 -37.30322 -36.09808 -33.70687 -32.55645 -30.83574 -30.00193 -29.33612 -28.24631 -27.38710 -25.06633 -24.20848 -22.49516 -21.29472 -20.73308 -20.59087 -19.23108 -18.41714 -17.90533 -17.82265 -16.96061 -16.77794 -16.44176 -16.32361 -16.21512 -15.89662 -15.75602 -15.53774 -15.08267 -14.72348 -14.59759 -14.24413 -14.04247 -13.92137 -13.17652 -13.08402 -13.05551 -12.90485 -12.78677 -12.73660 -12.61980 -12.29406 -12.17632 -11.89988 -11.81835 -11.75840 -11.73186 -11.59929 -11.20750 -11.08973 -10.56420 -10.34803 -9.96893 -9.33830 -8.40396 -7.74189 -5.32606 -0.42854 0.19022 1.38767 1.42174 1.46666 1.61238 2.51882 2.61188 3.01391 3.31628 3.38311 3.41675 3.73425 3.78494 3.94924 4.01307 4.05956 4.23805 4.29270 4.34441 4.48314 4.65707 4.66188 4.72409 4.76380 4.84821 4.86976 4.91975 4.92941 4.97604 5.00770 5.09919 5.20098 5.23961 5.24951 5.33695 5.53674 5.56982 5.63554 5.68570 5.73841 5.82016 5.87842 6.59450 6.61041 6.93203 7.29717 7.95955 8.46637 9.22607 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010127 B = 0.006506 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.172059 B = 4302.764695 C = 6087.171615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.389 3.611 3 O -0.489 6.489 4 C -0.198 4.198 5 C -0.092 4.092 6 C 0.068 3.932 7 F -0.138 7.138 8 C -0.107 4.107 9 C -0.107 4.107 10 C 0.185 3.815 11 N -0.572 5.572 12 C -0.221 4.221 13 H 0.031 0.969 14 C 0.010 3.990 15 N -0.909 5.909 16 Si 0.931 3.069 17 H -0.298 1.298 18 H -0.291 1.291 19 H -0.293 1.293 20 C 0.165 3.835 21 C -0.129 4.129 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.128 4.128 25 C 0.159 3.841 26 O -0.468 6.468 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.181 0.819 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.249 0.751 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.048 0.952 44 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.863 -8.673 -0.078 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.269 3.731 3 O -0.366 6.366 4 C -0.199 4.199 5 C -0.111 4.111 6 C 0.049 3.951 7 F -0.117 7.117 8 C -0.126 4.126 9 C -0.111 4.111 10 C 0.059 3.941 11 N -0.290 5.290 12 C -0.351 4.351 13 H 0.049 0.951 14 C -0.187 4.187 15 N -0.554 5.554 16 Si 0.763 3.237 17 H -0.226 1.226 18 H -0.217 1.217 19 H -0.219 1.219 20 C 0.058 3.942 21 C -0.168 4.168 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.167 4.167 25 C 0.112 3.888 26 O -0.277 6.277 27 H 0.130 0.870 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.198 0.802 31 H 0.164 0.836 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.464 -8.116 0.396 14.879 hybrid contribution 0.355 1.301 -0.403 1.407 sum -12.109 -6.815 -0.006 13.895 Atomic orbital electron populations 1.22251 0.89688 1.06427 1.06157 1.22940 0.93563 0.86359 0.70221 1.90600 1.73343 1.35197 1.37499 1.20969 0.93181 0.96220 1.09566 1.21388 1.01995 0.88525 0.99166 1.17451 0.89798 0.81527 1.06315 1.91491 1.80220 1.45637 1.94361 1.21256 0.92506 0.99001 0.99880 1.21344 1.00075 0.91558 0.98086 1.19770 0.85201 1.00140 0.88979 1.43835 1.72701 1.01768 1.10693 1.18508 1.31780 0.87306 0.97519 0.95092 1.25147 0.96144 0.99172 0.98282 1.70016 1.35951 1.33046 1.16393 0.85899 0.76415 0.84797 0.76629 1.22590 1.21739 1.21914 1.21532 0.92662 0.89600 0.90365 1.22816 0.98171 0.98792 0.97056 1.22239 0.94520 0.99900 0.98295 1.22025 0.97097 1.00571 0.95518 1.22395 0.98308 1.00207 0.95815 1.18950 0.88995 0.86343 0.94486 1.84949 1.75329 1.35620 1.31843 0.86955 0.88860 0.86728 0.80200 0.83604 0.90236 0.93799 0.94163 0.91728 0.92845 0.94259 0.90321 0.91575 0.93150 0.90678 0.93868 0.93350 0.76096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 9.75 71.24 0.69 -2.46 16 2 C 0.39 11.46 7.22 27.92 0.20 11.66 16 3 O -0.49 -19.15 15.91 17.87 0.28 -18.86 16 4 C -0.20 -6.11 5.88 -20.08 -0.12 -6.22 16 5 C -0.09 -2.20 9.33 22.62 0.21 -1.99 16 6 C 0.07 1.82 7.28 22.32 0.16 1.98 16 7 F -0.14 -3.43 17.26 44.97 0.78 -2.66 16 8 C -0.11 -3.25 9.63 22.36 0.22 -3.03 16 9 C -0.11 -3.98 5.47 -19.80 -0.11 -4.08 16 10 C 0.19 7.99 5.08 85.63 0.44 8.43 16 11 N -0.57 -26.50 2.43 -675.69 -1.64 -28.15 16 12 C -0.22 -11.69 6.85 84.03 0.58 -11.11 16 13 H 0.03 1.78 6.72 -2.91 -0.02 1.76 16 14 C 0.01 0.56 3.97 84.86 0.34 0.89 16 15 N -0.91 -50.14 11.48 21.65 0.25 -49.90 16 16 Si 0.93 47.20 29.03 68.60 1.99 49.19 16 17 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 18 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 19 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 20 C 0.16 6.53 3.39 46.19 0.16 6.69 16 21 C -0.13 -4.68 6.47 32.01 0.21 -4.47 16 22 C -0.11 -3.21 6.82 31.67 0.22 -2.99 16 23 C -0.11 -3.53 6.80 31.32 0.21 -3.31 16 24 C -0.13 -4.99 6.41 31.32 0.20 -4.79 16 25 C 0.16 6.12 6.70 22.90 0.15 6.27 16 26 O -0.47 -20.71 8.24 -68.48 -0.56 -21.28 16 27 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.11 1.19 6.47 -2.39 -0.02 1.18 16 30 H 0.18 2.70 6.36 -2.91 -0.02 2.69 16 31 H 0.15 3.95 8.02 -2.91 -0.02 3.93 16 32 H 0.08 3.94 5.29 -2.39 -0.01 3.93 16 33 H 0.04 1.76 7.77 -2.39 -0.02 1.75 16 34 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 35 H 0.06 2.35 7.84 -2.39 -0.02 2.33 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 1.67 6.63 -2.39 -0.02 1.65 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.04 2.04 6.92 -2.38 -0.02 2.02 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.38 15.36 9.06 -74.06 -0.67 14.69 16 Total: -1.00 -66.24 357.27 5.21 -61.03 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.36 Total: 19.16 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 3.75 Total: -8.54 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -1.40 Total: -78.04 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.28 Total: -40.14 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.99 Total: 49.19 kcal Total: -66.24 5.21 -61.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079443208.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.552 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds