Wall clock time and date at job start Tue Mar 31 2020 12:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47011 * 2 1 4 4 C 1.46503 * 119.99932 * 269.99860 * 3 2 1 5 5 C 1.50700 * 109.47081 * 270.00075 * 4 3 2 6 6 H 1.07998 * 120.00449 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99735 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99784 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47284 * 89.99967 * 9 7 5 11 11 H 1.48504 * 109.47184 * 209.99939 * 9 7 5 12 12 H 1.48501 * 109.47219 * 329.99932 * 9 7 5 13 13 C 1.34776 * 119.99819 * 90.00367 * 3 2 1 14 14 O 1.21597 * 119.99552 * 179.97438 * 13 3 2 15 15 N 1.34769 * 120.00359 * 359.97438 * 13 3 2 16 16 C 1.40130 * 120.00485 * 184.59364 * 15 13 3 17 17 C 1.38850 * 119.99698 * 324.91169 * 16 15 13 18 18 C 1.38066 * 119.99647 * 180.27082 * 17 16 15 19 19 C 1.38847 * 120.00123 * 359.49611 * 18 17 16 20 20 N 1.40132 * 120.00201 * 180.23220 * 19 18 17 21 21 C 1.34785 * 119.99878 * 35.33976 * 20 19 18 22 22 O 1.21515 * 119.99745 * 355.36817 * 21 20 19 23 23 O 1.34652 * 119.99646 * 175.37067 * 21 20 19 24 24 C 1.45207 * 116.99675 * 179.97438 * 23 21 20 25 25 C 1.38853 * 119.99769 * 0.49816 * 19 18 17 26 26 C 1.38051 * 120.00249 * 359.75643 * 25 19 18 27 27 H 1.08999 * 109.46927 * 300.00341 * 1 2 3 28 28 H 1.08996 * 109.47354 * 59.99979 * 1 2 3 29 29 H 1.08996 * 109.47263 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47114 * 240.00406 * 2 1 3 31 31 H 1.08996 * 109.47354 * 120.00020 * 2 1 3 32 32 H 1.08997 * 109.47189 * 30.00386 * 4 3 2 33 33 H 1.09001 * 109.46733 * 150.00446 * 4 3 2 34 34 H 0.97004 * 119.99824 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00003 * 4.59804 * 15 13 3 36 36 H 1.07999 * 120.00165 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.99413 * 179.74578 * 18 17 16 38 38 H 0.97002 * 120.00483 * 215.34316 * 20 19 18 39 39 H 1.08990 * 109.46770 * 60.00288 * 24 23 21 40 40 H 1.09003 * 109.46924 * 180.02562 * 24 23 21 41 41 H 1.08997 * 109.46948 * 299.99827 * 24 23 21 42 42 H 1.08004 * 119.99925 * 179.72861 * 25 19 18 43 43 H 1.08007 * 120.00536 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9131 2.0956 -3.4176 10 1 5.9759 0.8744 -4.2602 11 1 6.3922 3.2626 -4.2010 12 1 6.7735 1.9159 -2.2207 13 6 2.2430 2.0165 1.1672 14 8 2.6487 3.1628 1.1672 15 7 2.0180 1.3814 2.3344 16 6 2.1588 2.0711 3.5460 17 6 3.1410 3.0433 3.6813 18 6 3.2834 3.7189 4.8769 19 6 2.4377 3.4337 5.9405 20 7 2.5791 4.1228 7.1524 21 6 2.9399 5.4215 7.1511 22 8 3.2243 5.9719 6.1057 23 8 2.9853 6.1088 8.3081 24 6 3.3829 7.5033 8.2312 25 6 1.4555 2.4616 5.8051 26 6 1.3165 1.7823 4.6114 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0956 3.1411 -1.1384 34 1 3.6750 3.5162 -4.4440 35 1 1.7586 0.4467 2.3358 36 1 3.7966 3.2675 2.8529 37 1 4.0500 4.4722 4.9834 38 1 2.4173 3.6654 7.9924 39 1 2.6834 8.0459 7.5954 40 1 3.3783 7.9380 9.2308 41 1 4.3857 7.5724 7.8099 42 1 0.8005 2.2366 6.6339 43 1 0.5527 1.0258 4.5062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080169475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:35 Heat of formation + Delta-G solvation = -62.715592 kcal Electronic energy + Delta-G solvation = -26592.866453 eV Core-core repulsion = 22639.230785 eV Total energy + Delta-G solvation = -3953.635667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02254 -40.14304 -38.72265 -36.85120 -35.60999 -35.06091 -33.65170 -32.60244 -30.83789 -30.13900 -29.04509 -27.61950 -26.60003 -23.50228 -23.11422 -23.06044 -22.20725 -21.05652 -19.52511 -18.90234 -17.87594 -17.72583 -16.88696 -16.77800 -16.41850 -16.24791 -15.21447 -14.96100 -14.46418 -14.29699 -14.05662 -14.02384 -13.72246 -13.69088 -13.29496 -13.22320 -12.65819 -12.57320 -12.39084 -12.36351 -12.05223 -11.76726 -11.55909 -11.19522 -11.07154 -10.92723 -10.82186 -10.77489 -10.52077 -10.32380 -10.10338 -9.66379 -9.52194 -9.22546 -8.75984 -8.41323 -7.81605 -7.46076 -6.02032 -4.06634 1.30291 1.51993 1.90326 2.59778 3.21760 3.31809 3.38956 3.44030 3.71816 3.95174 4.09685 4.37952 4.51944 4.86095 4.92984 4.95476 5.02464 5.19346 5.24570 5.32026 5.45080 5.52281 5.54080 5.58557 5.66923 5.85547 5.96807 5.99028 6.14622 6.19201 6.29720 6.44015 6.52288 6.62312 6.80273 6.88062 7.12952 7.28651 7.37848 7.53169 7.69105 7.96063 8.06009 8.25326 8.60313 8.94235 9.26516 9.58781 11.05866 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.002892 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.321169 B = 9679.117385 C =11066.388662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.108 3.892 3 N -0.607 5.607 4 C 0.260 3.740 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.697 3.303 14 O -0.566 6.566 15 N -0.696 5.696 16 C 0.173 3.827 17 C -0.102 4.102 18 C -0.096 4.096 19 C 0.120 3.880 20 N -0.647 5.647 21 C 0.643 3.357 22 O -0.548 6.548 23 O -0.372 6.372 24 C 0.056 3.944 25 C -0.119 4.119 26 C -0.139 4.139 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.401 0.599 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.414 0.586 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.127 0.873 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -3.310 23.515 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.342 5.342 4 C 0.141 3.859 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.399 3.601 14 O -0.442 6.442 15 N -0.346 5.346 16 C 0.076 3.924 17 C -0.123 4.123 18 C -0.116 4.116 19 C 0.027 3.973 20 N -0.299 5.299 21 C 0.396 3.604 22 O -0.435 6.435 23 O -0.286 6.286 24 C -0.039 4.039 25 C -0.140 4.140 26 C -0.160 4.160 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.250 0.750 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.145 0.855 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.853 -1.963 22.731 23.326 hybrid contribution 0.697 -0.697 -0.049 0.987 sum -4.157 -2.660 22.682 23.213 Atomic orbital electron populations 1.22246 0.96687 1.01415 1.02586 1.21364 0.93579 0.84361 1.02394 1.47621 1.67030 1.13266 1.06241 1.19233 0.96201 0.93548 0.76907 1.21452 0.96995 1.31862 1.06183 0.92485 1.24927 0.97824 0.94927 0.96419 1.69933 1.35686 1.33433 1.14339 0.86500 0.84741 0.77619 0.78570 1.20711 1.21104 1.19901 1.15951 0.79219 0.84790 0.80099 1.90907 1.51114 1.16749 1.85428 1.43014 1.73828 1.14110 1.03673 1.17643 0.94506 0.95093 0.85179 1.21419 0.97473 0.95812 0.97600 1.21202 0.98736 0.99761 0.91930 1.17402 0.97885 0.96375 0.85648 1.41860 1.71217 1.07685 1.09114 1.18152 0.77344 0.82392 0.82493 1.91070 1.52113 1.69079 1.31215 1.86222 1.82492 1.26902 1.33022 1.23245 1.01020 0.75967 1.03625 1.20486 0.97240 0.98205 0.98085 1.20601 0.99536 1.03078 0.92817 0.93050 0.91824 0.92129 0.89530 0.92476 0.94808 0.93704 0.92724 0.76202 0.83217 0.84264 0.75003 0.91579 0.87847 0.91588 0.85530 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.61 -12.76 2.46 -180.80 -0.44 -13.20 16 4 C 0.26 6.79 5.16 -5.19 -0.03 6.76 16 5 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.70 14.89 8.12 -86.93 -0.71 14.18 16 14 O -0.57 -14.62 13.36 5.28 0.07 -14.55 16 15 N -0.70 -11.22 5.22 -14.18 -0.07 -11.29 16 16 C 0.17 2.70 6.30 -83.61 -0.53 2.17 16 17 C -0.10 -1.79 8.69 -39.42 -0.34 -2.13 16 18 C -0.10 -1.51 8.69 -39.42 -0.34 -1.85 16 19 C 0.12 1.53 6.30 -83.61 -0.53 1.01 16 20 N -0.65 -6.80 5.35 -14.23 -0.08 -6.88 16 21 C 0.64 8.10 8.59 54.06 0.46 8.56 16 22 O -0.55 -8.96 13.58 -19.28 -0.26 -9.22 16 23 O -0.37 -3.73 10.62 -40.36 -0.43 -4.16 16 24 C 0.06 0.41 10.56 101.05 1.07 1.48 16 25 C -0.12 -1.29 9.96 -39.42 -0.39 -1.69 16 26 C -0.14 -1.66 9.96 -39.42 -0.39 -2.05 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.71 6.30 -51.93 -0.33 0.38 16 32 H 0.03 0.88 8.07 -51.93 -0.42 0.47 16 33 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.40 5.06 6.52 -40.82 -0.27 4.79 16 36 H 0.15 3.09 6.22 -52.49 -0.33 2.76 16 37 H 0.14 2.32 6.24 -52.49 -0.33 1.99 16 38 H 0.41 2.82 8.93 -40.82 -0.36 2.46 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -36.28 366.92 -7.52 -43.80 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.76 Total: 6.28 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: -1.79 Total: 12.67 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.14 Total: -57.35 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.62 Total: -27.93 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.28 -7.52 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080169475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.920 kcal (2) G-P(sol) polarization free energy of solvation -36.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds