Wall clock time and date at job start Tue Mar 31 2020 12:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47011 * 2 1 4 4 C 1.46503 * 119.99932 * 269.99860 * 3 2 1 5 5 C 1.50700 * 109.47081 * 270.00075 * 4 3 2 6 6 H 1.07998 * 120.00449 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99735 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99784 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99865 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47284 * 89.99967 * 9 7 5 11 11 H 1.48504 * 109.47184 * 209.99939 * 9 7 5 12 12 H 1.48501 * 109.47219 * 329.99932 * 9 7 5 13 13 C 1.34776 * 119.99819 * 90.00367 * 3 2 1 14 14 O 1.21597 * 119.99552 * 179.97438 * 13 3 2 15 15 N 1.34769 * 120.00359 * 359.97438 * 13 3 2 16 16 C 1.40130 * 120.00485 * 184.59364 * 15 13 3 17 17 C 1.38850 * 119.99698 * 324.91169 * 16 15 13 18 18 C 1.38066 * 119.99647 * 180.27082 * 17 16 15 19 19 C 1.38847 * 120.00123 * 359.49611 * 18 17 16 20 20 N 1.40132 * 120.00201 * 180.23220 * 19 18 17 21 21 C 1.34785 * 119.99878 * 35.33976 * 20 19 18 22 22 O 1.21515 * 119.99745 * 355.36817 * 21 20 19 23 23 O 1.34652 * 119.99646 * 175.37067 * 21 20 19 24 24 C 1.45207 * 116.99675 * 179.97438 * 23 21 20 25 25 C 1.38853 * 119.99769 * 0.49816 * 19 18 17 26 26 C 1.38051 * 120.00249 * 359.75643 * 25 19 18 27 27 H 1.08999 * 109.46927 * 300.00341 * 1 2 3 28 28 H 1.08996 * 109.47354 * 59.99979 * 1 2 3 29 29 H 1.08996 * 109.47263 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47114 * 240.00406 * 2 1 3 31 31 H 1.08996 * 109.47354 * 120.00020 * 2 1 3 32 32 H 1.08997 * 109.47189 * 30.00386 * 4 3 2 33 33 H 1.09001 * 109.46733 * 150.00446 * 4 3 2 34 34 H 0.97004 * 119.99824 * 179.97438 * 8 7 5 35 35 H 0.97002 * 120.00003 * 4.59804 * 15 13 3 36 36 H 1.07999 * 120.00165 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.99413 * 179.74578 * 18 17 16 38 38 H 0.97002 * 120.00483 * 215.34316 * 20 19 18 39 39 H 1.08990 * 109.46770 * 60.00288 * 24 23 21 40 40 H 1.09003 * 109.46924 * 180.02562 * 24 23 21 41 41 H 1.08997 * 109.46948 * 299.99827 * 24 23 21 42 42 H 1.08004 * 119.99925 * 179.72861 * 25 19 18 43 43 H 1.08007 * 120.00536 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9131 2.0956 -3.4176 10 1 5.9759 0.8744 -4.2602 11 1 6.3922 3.2626 -4.2010 12 1 6.7735 1.9159 -2.2207 13 6 2.2430 2.0165 1.1672 14 8 2.6487 3.1628 1.1672 15 7 2.0180 1.3814 2.3344 16 6 2.1588 2.0711 3.5460 17 6 3.1410 3.0433 3.6813 18 6 3.2834 3.7189 4.8769 19 6 2.4377 3.4337 5.9405 20 7 2.5791 4.1228 7.1524 21 6 2.9399 5.4215 7.1511 22 8 3.2243 5.9719 6.1057 23 8 2.9853 6.1088 8.3081 24 6 3.3829 7.5033 8.2312 25 6 1.4555 2.4616 5.8051 26 6 1.3165 1.7823 4.6114 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5817 1.6878 -2.0284 33 1 2.0956 3.1411 -1.1384 34 1 3.6750 3.5162 -4.4440 35 1 1.7586 0.4467 2.3358 36 1 3.7966 3.2675 2.8529 37 1 4.0500 4.4722 4.9834 38 1 2.4173 3.6654 7.9924 39 1 2.6834 8.0459 7.5954 40 1 3.3783 7.9380 9.2308 41 1 4.3857 7.5724 7.8099 42 1 0.8005 2.2366 6.6339 43 1 0.5527 1.0258 4.5062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080169475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:33 Heat of formation + Delta-G solvation = -89.286759 kcal Electronic energy + Delta-G solvation = -26594.018665 eV Core-core repulsion = 22639.230785 eV Total energy + Delta-G solvation = -3954.787879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.05362 -41.53875 -39.90465 -37.88298 -37.06038 -36.43026 -35.17886 -34.46251 -31.94056 -31.61377 -30.24825 -28.86801 -27.98058 -25.22501 -24.41548 -24.24579 -23.50007 -22.13057 -20.91481 -19.99103 -19.29321 -18.71609 -18.58490 -18.25119 -17.68857 -17.27253 -16.87235 -16.49283 -16.01484 -15.55798 -15.24344 -15.15207 -15.06664 -14.67388 -14.65063 -14.45152 -14.16477 -13.74012 -13.70869 -13.60357 -13.26750 -13.08333 -13.03322 -12.73372 -12.70325 -12.51234 -12.20543 -11.98712 -11.88598 -11.88264 -11.73274 -11.46580 -10.94396 -10.74583 -10.63507 -9.89044 -9.51312 -8.70426 -8.21345 -6.36455 0.17992 0.44251 1.03284 1.35138 1.38868 1.48639 1.57785 1.76839 2.19582 2.39064 2.86613 3.02713 3.08619 3.16422 3.94712 4.04903 4.07553 4.31277 4.33306 4.36260 4.38331 4.43231 4.48983 4.56894 4.68004 4.75426 4.89415 4.97628 5.02774 5.11929 5.16092 5.20441 5.28876 5.37108 5.40904 5.49490 5.57155 5.60634 5.81817 6.06522 6.07706 6.12345 6.25114 6.72600 7.09167 7.16257 7.30711 7.66416 8.84825 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.002892 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.321169 B = 9679.117385 C =11066.388662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.613 5.613 4 C 0.279 3.721 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.692 3.308 14 O -0.624 6.624 15 N -0.673 5.673 16 C 0.147 3.853 17 C -0.131 4.131 18 C -0.114 4.114 19 C 0.125 3.875 20 N -0.629 5.629 21 C 0.640 3.360 22 O -0.593 6.593 23 O -0.363 6.363 24 C 0.048 3.952 25 C -0.098 4.098 26 C -0.116 4.116 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.029 0.971 33 H -0.005 1.005 34 H 0.267 0.733 35 H 0.421 0.579 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.436 0.564 39 H 0.058 0.942 40 H 0.144 0.856 41 H 0.059 0.941 42 H 0.179 0.821 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.728 -5.977 26.612 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.347 5.347 4 C 0.157 3.843 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.201 1.201 13 C 0.394 3.606 14 O -0.504 6.504 15 N -0.324 5.324 16 C 0.051 3.949 17 C -0.152 4.152 18 C -0.135 4.135 19 C 0.031 3.969 20 N -0.283 5.283 21 C 0.394 3.606 22 O -0.483 6.483 23 O -0.276 6.276 24 C -0.046 4.046 25 C -0.118 4.118 26 C -0.137 4.137 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.047 0.953 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.261 0.739 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.276 0.724 39 H 0.077 0.923 40 H 0.162 0.838 41 H 0.078 0.922 42 H 0.197 0.803 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.329 -4.719 25.921 27.097 hybrid contribution 1.118 0.195 -0.861 1.424 sum -5.212 -4.524 25.061 25.994 Atomic orbital electron populations 1.22166 0.94320 1.03680 1.01753 1.21733 0.95486 0.81180 1.03879 1.47485 1.67343 1.15256 1.04606 1.18635 0.95271 0.91266 0.79142 1.21716 0.97970 1.31920 1.06375 0.93030 1.25841 1.02319 0.94499 0.96480 1.70052 1.37748 1.34212 1.14810 0.85426 0.79059 0.78253 0.78114 1.18525 1.20731 1.20083 1.16170 0.78833 0.84280 0.81344 1.90880 1.53462 1.19554 1.86463 1.42578 1.72900 1.14733 1.02201 1.17873 0.95541 0.95576 0.85918 1.21095 0.98746 0.98280 0.97112 1.21013 0.99766 0.99887 0.92855 1.17503 0.97401 0.96534 0.85431 1.41703 1.70266 1.06999 1.09368 1.18411 0.76731 0.82954 0.82508 1.91064 1.54034 1.70189 1.33054 1.86248 1.82110 1.27966 1.31308 1.23564 1.00403 0.74669 1.05943 1.21007 0.96063 0.95736 0.98989 1.21030 0.98529 1.02862 0.91253 0.92350 0.94226 0.88171 0.90307 0.88733 0.95336 0.98677 0.92416 0.73851 0.88004 0.86561 0.72399 0.92270 0.83845 0.92210 0.80322 0.81070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.09 16 2 C 0.10 2.95 5.93 86.38 0.51 3.47 16 3 N -0.61 -26.61 2.46 -844.19 -2.07 -28.68 16 4 C 0.28 15.41 5.16 85.63 0.44 15.85 16 5 C -0.54 -31.95 9.39 25.60 0.24 -31.71 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 9 Si 0.97 46.15 29.54 68.60 2.03 48.18 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 13 C 0.69 30.79 8.12 179.06 1.45 32.24 16 14 O -0.62 -34.91 13.36 -4.02 -0.05 -34.96 16 15 N -0.67 -21.27 5.22 -317.05 -1.66 -22.92 16 16 C 0.15 4.49 6.30 38.11 0.24 4.73 16 17 C -0.13 -4.93 8.69 22.38 0.19 -4.73 16 18 C -0.11 -3.79 8.69 22.37 0.19 -3.60 16 19 C 0.12 2.98 6.30 38.11 0.24 3.22 16 20 N -0.63 -11.83 5.35 -429.31 -2.30 -14.13 16 21 C 0.64 15.71 8.59 129.79 1.12 16.82 16 22 O -0.59 -20.20 13.58 19.79 0.27 -19.93 16 23 O -0.36 -6.71 10.62 -55.62 -0.59 -7.30 16 24 C 0.05 0.66 10.56 113.37 1.20 1.85 16 25 C -0.10 -1.66 9.96 22.37 0.22 -1.44 16 26 C -0.12 -2.29 9.96 22.37 0.22 -2.06 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 2.48 8.07 -2.39 -0.02 2.46 16 31 H 0.09 2.08 6.30 -2.39 -0.02 2.07 16 32 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 33 H 0.00 -0.32 7.42 -2.39 -0.02 -0.34 16 34 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.42 9.45 6.52 -92.71 -0.60 8.85 16 36 H 0.10 4.77 6.22 -2.91 -0.02 4.75 16 37 H 0.12 4.30 6.24 -2.91 -0.02 4.29 16 38 H 0.44 4.29 8.93 -92.71 -0.83 3.46 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -88.55 366.92 3.01 -85.54 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.38 Total: 18.83 kcal Atomic # 6 Polarization: 24.99 SS G_CDS: 7.48 Total: 32.47 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -5.74 Total: -122.82 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -0.38 Total: -62.19 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -88.55 3.01 -85.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080169475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.745 kcal (2) G-P(sol) polarization free energy of solvation -88.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds