Wall clock time and date at job start Tue Mar 31 2020 12:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47125 * 2 1 4 4 C 1.46494 * 120.00309 * 270.00027 * 3 2 1 5 5 C 1.50701 * 109.47584 * 269.99850 * 4 3 2 6 6 H 1.08001 * 119.99457 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00684 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99578 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00487 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46973 * 59.99464 * 9 7 5 11 11 H 1.48496 * 109.47278 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46934 * 299.99983 * 9 7 5 13 13 C 1.34785 * 119.99932 * 89.99993 * 3 2 1 14 14 O 1.21582 * 120.00169 * 180.02562 * 13 3 2 15 15 N 1.34779 * 119.99785 * 0.02562 * 13 3 2 16 16 C 1.39942 * 119.99800 * 174.63414 * 15 13 3 17 17 C 1.38940 * 120.03080 * 146.68869 * 16 15 13 18 18 C 1.38143 * 120.06598 * 180.02562 * 17 16 15 19 19 C 1.38185 * 120.13728 * 359.97438 * 18 17 16 20 20 C 1.38895 * 120.06873 * 359.97438 * 19 18 17 21 21 N 1.39956 * 120.02988 * 180.02562 * 20 19 18 22 22 C 1.34770 * 120.00123 * 35.69753 * 21 20 19 23 23 O 1.21507 * 120.00536 * 355.40565 * 22 21 20 24 24 O 1.34647 * 119.99924 * 175.41140 * 22 21 20 25 25 C 1.45200 * 117.00124 * 180.02562 * 24 22 21 26 26 C 1.38717 * 120.03290 * 326.41084 * 16 15 13 27 27 H 1.08992 * 109.47445 * 299.99578 * 1 2 3 28 28 H 1.09006 * 109.47287 * 60.00210 * 1 2 3 29 29 H 1.09004 * 109.46880 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.47490 * 240.00340 * 2 1 3 31 31 H 1.08996 * 109.47362 * 120.00355 * 2 1 3 32 32 H 1.08999 * 109.47241 * 29.99788 * 4 3 2 33 33 H 1.09005 * 109.47372 * 149.99608 * 4 3 2 34 34 H 0.96999 * 119.99898 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99526 * 354.91331 * 15 13 3 36 36 H 1.07998 * 119.96734 * 359.97438 * 17 16 15 37 37 H 1.07995 * 119.92667 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.96272 * 180.02562 * 19 18 17 39 39 H 0.96996 * 119.99539 * 215.69646 * 21 20 19 40 40 H 1.08996 * 109.47353 * 59.99162 * 25 24 22 41 41 H 1.09004 * 109.47353 * 179.97438 * 25 24 22 42 42 H 1.09001 * 109.47099 * 299.99464 * 25 24 22 43 43 H 1.08000 * 120.07566 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0957 7 6 4.1494 2.3907 -2.8773 8 7 3.3494 3.1267 -3.6174 9 14 5.9134 2.0967 -3.4170 10 1 6.1402 0.6399 -3.5954 11 1 6.1609 2.7969 -4.7029 12 1 6.8413 2.6189 -2.3818 13 6 2.2429 2.0166 1.1673 14 8 2.6478 3.1630 1.1673 15 7 2.0188 1.3810 2.3345 16 6 2.3573 1.9986 3.5437 17 6 1.5897 1.7714 4.6794 18 6 1.9230 2.3811 5.8733 19 6 3.0204 3.2180 5.9424 20 6 3.7923 3.4483 4.8109 21 7 4.9039 4.2956 4.8819 22 6 5.6605 4.3227 5.9968 23 8 5.3310 3.6750 6.9706 24 8 6.7816 5.0676 6.0318 25 6 7.5475 5.0487 7.2652 26 6 3.4630 2.8336 3.6112 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5817 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 3.6754 3.5173 -4.4433 35 1 1.6265 0.4938 2.3360 36 1 0.7312 1.1182 4.6284 37 1 1.3245 2.2033 6.7545 38 1 3.2786 3.6929 6.8774 39 1 5.1298 4.8634 4.1286 40 1 7.8668 4.0287 7.4790 41 1 8.4236 5.6885 7.1588 42 1 6.9274 5.4143 8.0836 43 1 4.0641 3.0079 2.7310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080169628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:38 Heat of formation + Delta-G solvation = -64.990833 kcal Electronic energy + Delta-G solvation = -26844.663993 eV Core-core repulsion = 22890.929664 eV Total energy + Delta-G solvation = -3953.734329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.00893 -40.17653 -38.69120 -36.82460 -35.52428 -35.12354 -33.96106 -32.69845 -30.24226 -30.07741 -29.25275 -27.60582 -26.84270 -23.54382 -23.13907 -23.08982 -22.21819 -20.95253 -19.52431 -18.84465 -18.22190 -17.26289 -16.78678 -16.66498 -16.42066 -15.95262 -15.50201 -15.09415 -14.66024 -14.42926 -14.27724 -13.99890 -13.71660 -13.56319 -13.45637 -13.29640 -12.76170 -12.41825 -12.33953 -12.10511 -11.98428 -11.79239 -11.42463 -11.22847 -11.03885 -10.98025 -10.82685 -10.76315 -10.56190 -10.47780 -10.15462 -9.85979 -9.68090 -9.32198 -8.45104 -8.29158 -7.93432 -7.60193 -6.06103 -4.10981 1.30932 1.54823 1.95882 2.62757 3.16817 3.30515 3.35123 3.38656 3.68103 4.02837 4.07729 4.34757 4.48147 4.88885 4.96814 5.00894 5.20459 5.22138 5.25713 5.27878 5.38138 5.49775 5.53243 5.56790 5.65070 5.78091 5.92942 5.99826 6.15364 6.26771 6.32529 6.42081 6.50979 6.56371 6.74260 6.82582 7.22685 7.24321 7.33518 7.47669 7.64205 7.91706 8.09469 8.20976 8.54519 8.89588 9.20062 9.54494 11.01732 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.003576 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.081980 B = 7827.007621 C = 9929.819155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.606 5.606 4 C 0.261 3.739 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.698 3.302 14 O -0.568 6.568 15 N -0.695 5.695 16 C 0.200 3.800 17 C -0.166 4.166 18 C -0.084 4.084 19 C -0.145 4.145 20 C 0.171 3.829 21 N -0.646 5.646 22 C 0.649 3.351 23 O -0.557 6.557 24 O -0.368 6.368 25 C 0.057 3.943 26 C -0.140 4.140 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.421 0.579 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.795 -2.497 18.612 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.341 5.341 4 C 0.142 3.858 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.400 3.600 14 O -0.444 6.444 15 N -0.345 5.345 16 C 0.103 3.897 17 C -0.188 4.188 18 C -0.103 4.103 19 C -0.166 4.166 20 C 0.078 3.922 21 N -0.297 5.297 22 C 0.403 3.597 23 O -0.445 6.445 24 O -0.282 6.282 25 C -0.038 4.038 26 C -0.163 4.163 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.258 0.742 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.083 0.917 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.530 -1.832 18.798 18.894 hybrid contribution 0.965 -0.395 -0.721 1.268 sum 0.435 -2.227 18.077 18.219 Atomic orbital electron populations 1.22258 0.96649 1.01526 1.02576 1.21391 0.93574 0.84326 1.02608 1.47630 1.66984 1.13198 1.06247 1.19227 0.96202 0.93507 0.76900 1.21415 0.96969 1.32000 1.06297 0.92538 1.24915 0.97808 0.94903 0.96366 1.69919 1.35715 1.33343 1.14372 0.86568 0.84816 0.78246 0.77829 1.20282 1.21170 1.20219 1.15946 0.79264 0.84714 0.80083 1.90894 1.51606 1.16372 1.85565 1.43009 1.67038 1.20730 1.03716 1.17169 0.92458 0.95019 0.85035 1.20858 1.00414 1.04881 0.92613 1.20712 0.96355 0.96199 0.97033 1.21130 0.95195 1.01801 0.98439 1.17222 0.86840 0.93477 0.94675 1.41940 1.26976 1.43710 1.17100 1.18054 0.79664 0.78544 0.83446 1.90991 1.72657 1.46259 1.34630 1.86268 1.35245 1.65073 1.41632 1.23234 0.94216 1.03236 0.83089 1.20964 0.98141 0.99384 0.97838 0.93069 0.91776 0.92036 0.89463 0.92322 0.94803 0.93717 0.92639 0.76019 0.85773 0.85500 0.84602 0.74208 0.91682 0.87807 0.91712 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.60 5.85 -4.04 -0.02 1.58 16 3 N -0.61 -12.43 2.46 -180.80 -0.44 -12.87 16 4 C 0.26 6.64 5.16 -5.20 -0.03 6.61 16 5 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 9 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.70 14.41 8.01 -86.91 -0.70 13.72 16 14 O -0.57 -13.99 13.63 5.29 0.07 -13.92 16 15 N -0.70 -11.01 5.18 -14.24 -0.07 -11.09 16 16 C 0.20 3.11 6.27 -83.72 -0.53 2.59 16 17 C -0.17 -2.08 9.96 -39.36 -0.39 -2.48 16 18 C -0.08 -1.01 10.03 -39.64 -0.40 -1.41 16 19 C -0.14 -2.01 8.69 -39.36 -0.34 -2.35 16 20 C 0.17 2.57 6.29 -83.71 -0.53 2.05 16 21 N -0.65 -8.75 5.34 -14.29 -0.08 -8.82 16 22 C 0.65 8.89 8.59 54.05 0.46 9.36 16 23 O -0.56 -8.65 13.60 -19.28 -0.26 -8.92 16 24 O -0.37 -4.27 10.62 -40.34 -0.43 -4.69 16 25 C 0.06 0.45 10.56 101.05 1.07 1.52 16 26 C -0.14 -2.35 8.57 -39.21 -0.34 -2.68 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.39 8.07 -51.92 -0.42 0.97 16 31 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.40 5.05 6.62 -40.82 -0.27 4.78 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.14 1.90 6.26 -52.49 -0.33 1.57 16 39 H 0.42 5.02 8.93 -40.82 -0.36 4.65 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.15 2.79 6.43 -52.49 -0.34 2.45 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -34.49 367.36 -7.52 -42.01 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.79 Total: 8.23 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: -1.77 Total: 13.38 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.14 Total: -58.22 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.62 Total: -27.53 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.49 -7.52 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080169628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.977 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds