Wall clock time and date at job start Tue Mar 31 2020 12:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47125 * 2 1 4 4 C 1.46494 * 120.00309 * 270.00027 * 3 2 1 5 5 C 1.50701 * 109.47584 * 269.99850 * 4 3 2 6 6 H 1.08001 * 119.99457 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00684 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99578 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00487 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46973 * 59.99464 * 9 7 5 11 11 H 1.48496 * 109.47278 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46934 * 299.99983 * 9 7 5 13 13 C 1.34785 * 119.99932 * 89.99993 * 3 2 1 14 14 O 1.21582 * 120.00169 * 180.02562 * 13 3 2 15 15 N 1.34779 * 119.99785 * 0.02562 * 13 3 2 16 16 C 1.39942 * 119.99800 * 174.63414 * 15 13 3 17 17 C 1.38940 * 120.03080 * 146.68869 * 16 15 13 18 18 C 1.38143 * 120.06598 * 180.02562 * 17 16 15 19 19 C 1.38185 * 120.13728 * 359.97438 * 18 17 16 20 20 C 1.38895 * 120.06873 * 359.97438 * 19 18 17 21 21 N 1.39956 * 120.02988 * 180.02562 * 20 19 18 22 22 C 1.34770 * 120.00123 * 35.69753 * 21 20 19 23 23 O 1.21507 * 120.00536 * 355.40565 * 22 21 20 24 24 O 1.34647 * 119.99924 * 175.41140 * 22 21 20 25 25 C 1.45200 * 117.00124 * 180.02562 * 24 22 21 26 26 C 1.38717 * 120.03290 * 326.41084 * 16 15 13 27 27 H 1.08992 * 109.47445 * 299.99578 * 1 2 3 28 28 H 1.09006 * 109.47287 * 60.00210 * 1 2 3 29 29 H 1.09004 * 109.46880 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.47490 * 240.00340 * 2 1 3 31 31 H 1.08996 * 109.47362 * 120.00355 * 2 1 3 32 32 H 1.08999 * 109.47241 * 29.99788 * 4 3 2 33 33 H 1.09005 * 109.47372 * 149.99608 * 4 3 2 34 34 H 0.96999 * 119.99898 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99526 * 354.91331 * 15 13 3 36 36 H 1.07998 * 119.96734 * 359.97438 * 17 16 15 37 37 H 1.07995 * 119.92667 * 179.97438 * 18 17 16 38 38 H 1.07997 * 119.96272 * 180.02562 * 19 18 17 39 39 H 0.96996 * 119.99539 * 215.69646 * 21 20 19 40 40 H 1.08996 * 109.47353 * 59.99162 * 25 24 22 41 41 H 1.09004 * 109.47353 * 179.97438 * 25 24 22 42 42 H 1.09001 * 109.47099 * 299.99464 * 25 24 22 43 43 H 1.08000 * 120.07566 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0957 7 6 4.1494 2.3907 -2.8773 8 7 3.3494 3.1267 -3.6174 9 14 5.9134 2.0967 -3.4170 10 1 6.1402 0.6399 -3.5954 11 1 6.1609 2.7969 -4.7029 12 1 6.8413 2.6189 -2.3818 13 6 2.2429 2.0166 1.1673 14 8 2.6478 3.1630 1.1673 15 7 2.0188 1.3810 2.3345 16 6 2.3573 1.9986 3.5437 17 6 1.5897 1.7714 4.6794 18 6 1.9230 2.3811 5.8733 19 6 3.0204 3.2180 5.9424 20 6 3.7923 3.4483 4.8109 21 7 4.9039 4.2956 4.8819 22 6 5.6605 4.3227 5.9968 23 8 5.3310 3.6750 6.9706 24 8 6.7816 5.0676 6.0318 25 6 7.5475 5.0487 7.2652 26 6 3.4630 2.8336 3.6112 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5817 1.6878 -2.0283 33 1 2.0954 3.1411 -1.1383 34 1 3.6754 3.5173 -4.4433 35 1 1.6265 0.4938 2.3360 36 1 0.7312 1.1182 4.6284 37 1 1.3245 2.2033 6.7545 38 1 3.2786 3.6929 6.8774 39 1 5.1298 4.8634 4.1286 40 1 7.8668 4.0287 7.4790 41 1 8.4236 5.6885 7.1588 42 1 6.9274 5.4143 8.0836 43 1 4.0641 3.0079 2.7310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080169628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:37 Heat of formation + Delta-G solvation = -88.899563 kcal Electronic energy + Delta-G solvation = -26845.700753 eV Core-core repulsion = 22890.929664 eV Total energy + Delta-G solvation = -3954.771089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10675 -41.54423 -39.89656 -37.88952 -37.03007 -36.39017 -35.34682 -34.64820 -31.63211 -31.25374 -30.49520 -28.70776 -28.32729 -25.28139 -24.42911 -24.19554 -23.53373 -22.09757 -20.91969 -19.95864 -19.48414 -18.76137 -18.43950 -17.77957 -17.70671 -17.21226 -16.83372 -16.50317 -16.36719 -15.71579 -15.41858 -15.21195 -15.07152 -14.71236 -14.66898 -14.44295 -14.29473 -13.84089 -13.61092 -13.28433 -13.13106 -13.08436 -12.93648 -12.70565 -12.55340 -12.51310 -12.18781 -11.95144 -11.93464 -11.88053 -11.74026 -11.59723 -11.11587 -10.91120 -10.62880 -9.58299 -9.39784 -8.91508 -8.20669 -6.35431 0.22505 0.39607 0.99839 1.36917 1.40495 1.47746 1.55902 1.74422 2.19436 2.39433 2.87641 2.99117 3.08808 3.14162 3.99111 4.06844 4.19679 4.25878 4.29852 4.34514 4.37754 4.42210 4.46052 4.55803 4.65565 4.68780 4.85832 4.97373 5.02635 5.09056 5.18367 5.25456 5.29836 5.37022 5.40020 5.48736 5.57013 5.58894 5.81096 6.07288 6.08039 6.11441 6.17304 6.73302 7.05125 7.06689 7.31554 7.64174 8.85523 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.003576 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.081980 B = 7827.007621 C = 9929.819155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.612 5.612 4 C 0.279 3.721 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.694 3.306 14 O -0.618 6.618 15 N -0.674 5.674 16 C 0.177 3.823 17 C -0.149 4.149 18 C -0.072 4.072 19 C -0.149 4.149 20 C 0.161 3.839 21 N -0.647 5.647 22 C 0.650 3.350 23 O -0.577 6.577 24 O -0.372 6.372 25 C 0.048 3.952 26 C -0.163 4.163 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.027 0.973 33 H -0.001 1.001 34 H 0.267 0.733 35 H 0.421 0.579 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.137 0.863 39 H 0.424 0.576 40 H 0.063 0.937 41 H 0.137 0.863 42 H 0.069 0.931 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 -4.348 20.620 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.346 5.346 4 C 0.158 3.842 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.396 3.604 14 O -0.498 6.498 15 N -0.325 5.325 16 C 0.081 3.919 17 C -0.170 4.170 18 C -0.091 4.091 19 C -0.170 4.170 20 C 0.068 3.932 21 N -0.298 5.298 22 C 0.404 3.596 23 O -0.467 6.467 24 O -0.286 6.286 25 C -0.046 4.046 26 C -0.187 4.187 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.045 0.955 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.261 0.739 36 H 0.180 0.820 37 H 0.185 0.815 38 H 0.154 0.846 39 H 0.262 0.738 40 H 0.082 0.918 41 H 0.155 0.845 42 H 0.088 0.912 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.862 -3.742 20.846 21.196 hybrid contribution 1.066 0.208 -1.229 1.640 sum 0.204 -3.534 19.617 19.934 Atomic orbital electron populations 1.22179 0.94268 1.03703 1.01868 1.21730 0.95494 0.81343 1.03861 1.47492 1.67363 1.15054 1.04731 1.18638 0.95183 0.91397 0.79022 1.21687 0.97968 1.32012 1.06485 0.93066 1.25791 1.02134 0.94498 0.96421 1.70036 1.37702 1.34118 1.14803 0.85524 0.79297 0.78968 0.77342 1.18580 1.20304 1.20532 1.16115 0.78863 0.84292 0.81146 1.90860 1.53673 1.18787 1.86473 1.42615 1.66377 1.21135 1.02358 1.17465 0.93076 0.95761 0.85629 1.21196 1.00369 1.04284 0.91154 1.21174 0.95432 0.94297 0.98164 1.21317 0.95676 1.02186 0.97773 1.17331 0.87543 0.93758 0.94609 1.41970 1.26925 1.43554 1.17392 1.18112 0.80009 0.78440 0.83025 1.90959 1.73303 1.47211 1.35247 1.86288 1.34489 1.64341 1.43449 1.23601 0.94862 1.04086 0.82004 1.20797 0.99208 1.01349 0.97303 0.92271 0.94012 0.88302 0.90334 0.88947 0.95474 0.98287 0.92397 0.73874 0.82039 0.81539 0.84567 0.73823 0.91778 0.84536 0.91232 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 10.24 71.98 0.74 -3.02 16 2 C 0.10 2.87 5.85 86.38 0.51 3.37 16 3 N -0.61 -25.68 2.46 -844.20 -2.07 -27.76 16 4 C 0.28 14.93 5.16 85.63 0.44 15.37 16 5 C -0.54 -31.14 9.39 25.60 0.24 -30.90 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.62 5.46 84.65 0.46 1.08 16 8 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 9 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 C 0.69 29.41 8.01 179.05 1.43 30.85 16 14 O -0.62 -32.26 13.63 -3.97 -0.05 -32.32 16 15 N -0.67 -20.74 5.18 -317.23 -1.64 -22.38 16 16 C 0.18 5.34 6.27 38.13 0.24 5.58 16 17 C -0.15 -3.24 9.96 22.42 0.22 -3.02 16 18 C -0.07 -1.48 10.03 22.23 0.22 -1.26 16 19 C -0.15 -3.92 8.69 22.41 0.19 -3.73 16 20 C 0.16 4.91 6.29 38.13 0.24 5.15 16 21 N -0.65 -18.13 5.34 -429.52 -2.29 -20.42 16 22 C 0.65 17.87 8.59 129.79 1.11 18.98 16 23 O -0.58 -17.71 13.60 19.82 0.27 -17.44 16 24 O -0.37 -8.49 10.62 -55.56 -0.59 -9.08 16 25 C 0.05 0.70 10.56 113.37 1.20 1.90 16 26 C -0.16 -5.66 8.57 22.51 0.19 -5.46 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.10 1.58 8.14 -2.38 -0.02 1.57 16 30 H 0.08 2.44 8.07 -2.38 -0.02 2.42 16 31 H 0.09 2.06 6.44 -2.39 -0.02 2.05 16 32 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 33 H 0.00 -0.06 7.42 -2.38 -0.02 -0.08 16 34 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.42 9.45 6.62 -92.71 -0.61 8.84 16 36 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 37 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.14 3.62 6.26 -2.91 -0.02 3.60 16 39 H 0.42 10.87 8.93 -92.71 -0.83 10.04 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.11 4.59 6.43 -2.91 -0.02 4.57 16 Total: -1.00 -79.48 367.36 2.99 -76.49 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.39 Total: 26.59 kcal Atomic # 6 Polarization: 27.45 SS G_CDS: 7.45 Total: 34.90 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -5.72 Total: -126.03 kcal Atomic # 8 Polarization: -58.46 SS G_CDS: -0.37 Total: -58.83 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -79.48 2.99 -76.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080169628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.405 kcal (2) G-P(sol) polarization free energy of solvation -79.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds