Wall clock time and date at job start Tue Mar 31 2020 12:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46910 * 109.46729 * 2 1 4 4 C 1.46895 * 110.99935 * 69.00669 * 3 2 1 5 5 C 1.50700 * 109.47572 * 66.04288 * 4 3 2 6 6 H 1.08006 * 119.99862 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00315 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99836 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47056 * 90.00101 * 9 7 5 11 11 H 1.48507 * 109.47204 * 209.99700 * 9 7 5 12 12 H 1.48493 * 109.47302 * 329.99823 * 9 7 5 13 13 C 1.46896 * 111.00032 * 305.04942 * 3 2 1 14 14 H 1.08995 * 109.47234 * 65.34296 * 13 3 2 15 15 C 1.52999 * 109.47210 * 185.34439 * 13 3 2 16 16 C 1.50700 * 109.47183 * 305.34488 * 13 3 2 17 17 O 1.21290 * 120.00037 * 332.24688 * 16 13 3 18 18 N 1.34775 * 120.00307 * 152.25152 * 16 13 3 19 19 C 1.39926 * 120.00368 * 185.17220 * 18 16 13 20 20 C 1.38897 * 120.06706 * 317.71890 * 19 18 16 21 21 C 1.38092 * 119.93049 * 179.97438 * 20 19 18 22 22 C 1.38312 * 120.06809 * 359.97438 * 21 20 19 23 23 C 1.38263 * 120.13850 * 0.02562 * 22 21 20 24 24 C 1.38136 * 120.07164 * 359.74987 * 23 22 21 25 25 N 1.48013 * 120.03218 * 180.28090 * 24 23 22 26 26 O 1.21799 * 120.00169 * 354.21652 * 25 24 23 27 27 O 1.21802 * 119.99788 * 174.22420 * 25 24 23 28 28 H 1.09005 * 109.47344 * 62.40277 * 1 2 3 29 29 H 1.08997 * 109.47372 * 182.40273 * 1 2 3 30 30 H 1.09002 * 109.47298 * 302.40043 * 1 2 3 31 31 H 1.08998 * 109.47122 * 119.99449 * 2 1 3 32 32 H 1.09001 * 109.46908 * 240.00375 * 2 1 3 33 33 H 1.08995 * 109.47026 * 186.04490 * 4 3 2 34 34 H 1.09004 * 109.47154 * 306.04110 * 4 3 2 35 35 H 0.96995 * 119.99485 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46787 * 59.99989 * 15 13 3 37 37 H 1.08992 * 109.47050 * 179.97438 * 15 13 3 38 38 H 1.08994 * 109.47099 * 300.00336 * 15 13 3 39 39 H 0.97002 * 119.99620 * 5.16570 * 18 16 13 40 40 H 1.08000 * 120.03419 * 0.02562 * 20 19 18 41 41 H 1.07995 * 119.96446 * 179.97438 * 21 20 19 42 42 H 1.07992 * 119.92753 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.95985 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7318 2.0452 1.2804 5 6 2.5269 1.3838 2.3765 6 1 3.1804 0.5556 2.1451 7 6 2.4194 1.8353 3.6747 8 7 1.6232 2.8435 3.9565 9 14 3.4044 1.0150 5.0335 10 1 4.7190 1.6922 5.1697 11 1 2.6603 1.1163 6.3147 12 1 3.6171 -0.4154 4.6963 13 6 1.4525 2.1439 -1.1227 14 1 0.3748 2.2385 -0.9898 15 6 2.0848 3.5364 -1.1683 16 6 1.7378 1.4201 -2.4133 17 8 2.7155 0.7083 -2.5061 18 7 0.9068 1.5638 -3.4646 19 6 1.1101 0.8096 -4.6255 20 6 2.3944 0.6318 -5.1238 21 6 2.5919 -0.1136 -6.2694 22 6 1.5126 -0.6832 -6.9202 23 6 0.2329 -0.5080 -6.4266 24 6 0.0292 0.2326 -5.2785 25 7 -1.3403 0.4143 -4.7475 26 8 -2.2976 0.0017 -5.3775 27 8 -1.5101 0.9767 -3.6805 28 1 -0.3634 0.4761 -0.9108 29 1 -0.3634 -1.0267 0.0431 30 1 -0.3634 0.5507 0.8677 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.0070 3.0979 1.2163 34 1 0.6678 1.9606 1.5017 35 1 1.5478 3.1613 4.8698 36 1 3.1626 3.4418 -1.3012 37 1 1.6644 4.0992 -2.0016 38 1 1.8785 4.0599 -0.2348 39 1 0.1676 2.1901 -3.4163 40 1 3.2377 1.0753 -4.6153 41 1 3.5902 -0.2518 -6.6575 42 1 1.6696 -1.2653 -7.8161 43 1 -0.6077 -0.9545 -6.9369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081017911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:06 Heat of formation + Delta-G solvation = 8.085182 kcal Electronic energy + Delta-G solvation = -27917.578378 eV Core-core repulsion = 23967.012863 eV Total energy + Delta-G solvation = -3950.565515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.44407 -40.76658 -39.19589 -37.05267 -36.67919 -34.95013 -32.71396 -32.24190 -31.77440 -30.28396 -28.74484 -26.66696 -26.34286 -24.57851 -23.25228 -22.90365 -22.53430 -20.87647 -19.52340 -19.15883 -18.77178 -17.85498 -17.63176 -17.05246 -16.25044 -15.84786 -15.74832 -15.12354 -15.06150 -14.66029 -14.47365 -14.07777 -13.70099 -13.36981 -13.08521 -12.85910 -12.36855 -12.28951 -12.16451 -11.96035 -11.78584 -11.70684 -11.40315 -11.31214 -11.28883 -11.08935 -10.86212 -10.76747 -10.64600 -10.54956 -10.06025 -10.00387 -9.89629 -9.41717 -9.19259 -8.84096 -8.42009 -7.25131 -6.03313 -4.03311 -0.38658 0.59649 1.11154 1.21250 2.48586 2.68999 3.05281 3.33130 3.39083 3.43328 3.99921 4.27484 4.40196 4.46789 4.52496 4.66302 4.78517 4.88304 5.18570 5.32818 5.41432 5.46085 5.50278 5.54102 5.72485 5.77791 5.86359 5.89340 5.97088 6.07841 6.12466 6.21551 6.32962 6.44561 6.53879 6.65432 6.90866 7.07459 7.25753 7.37185 7.47654 7.78021 7.97230 8.10306 8.17245 8.50647 9.03736 9.60246 11.07587 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.003265 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.928873 B = 8572.446373 C = 9021.636309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 N -0.510 5.510 4 C 0.188 3.812 5 C -0.504 4.504 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.068 3.932 14 H 0.062 0.938 15 C -0.141 4.141 16 C 0.528 3.472 17 O -0.495 6.495 18 N -0.678 5.678 19 C 0.230 3.770 20 C -0.122 4.122 21 C -0.048 4.048 22 C -0.138 4.138 23 C -0.042 4.042 24 C -0.078 4.078 25 N 0.037 4.963 26 O -0.162 6.162 27 O -0.167 6.167 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.038 0.962 34 H -0.001 1.001 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.422 0.578 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -3.060 -23.112 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.078 4.078 3 N -0.236 5.236 4 C 0.063 3.937 5 C -0.543 4.543 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.044 4.044 14 H 0.080 0.920 15 C -0.198 4.198 16 C 0.317 3.683 17 O -0.365 6.365 18 N -0.329 5.329 19 C 0.131 3.869 20 C -0.143 4.143 21 C -0.067 4.067 22 C -0.157 4.157 23 C -0.061 4.061 24 C -0.165 4.165 25 N 0.554 4.446 26 O -0.377 6.377 27 O -0.379 6.379 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.017 0.983 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.262 0.738 40 H 0.175 0.825 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.085 -3.509 -23.174 23.438 hybrid contribution -1.267 -0.083 1.074 1.663 sum -1.182 -3.593 -22.099 22.421 Atomic orbital electron populations 1.22436 0.99301 1.01445 1.01730 1.22158 0.91808 0.91216 1.02572 1.62316 1.56985 1.01333 1.02918 1.19902 0.95443 0.95057 0.83267 1.21121 1.25130 1.16720 0.91284 0.91831 1.24953 0.95646 0.95245 0.98681 1.69951 1.37938 1.26121 1.19836 0.86502 0.79961 0.79861 0.81121 1.20660 1.21368 1.19883 1.21544 0.98982 0.94813 0.89037 0.92026 1.21833 1.01864 0.93247 1.02889 1.21368 0.81519 0.80858 0.84556 1.90685 1.26463 1.36828 1.82570 1.44245 1.34266 1.42103 1.12264 1.17564 0.92095 0.90876 0.86368 1.21411 0.95658 1.01097 0.96127 1.21554 1.00162 0.92166 0.92805 1.21177 0.90812 1.02065 1.01692 1.20920 0.99570 0.93686 0.91939 1.21124 0.81343 1.11292 1.02715 1.43468 1.02838 0.98312 1.00021 1.94524 1.32420 1.51762 1.59038 1.94501 1.91822 1.42291 1.09241 0.93644 0.93270 0.91430 0.89447 0.92187 0.94426 0.98297 0.92941 0.91239 0.92947 0.89772 0.73760 0.82510 0.83654 0.83561 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.56 9.14 37.16 0.34 -3.22 16 2 C 0.05 1.05 5.41 -3.82 -0.02 1.03 16 3 N -0.51 -10.94 4.33 -229.48 -0.99 -11.93 16 4 C 0.19 4.68 4.43 -4.98 -0.02 4.66 16 5 C -0.50 -13.93 8.39 -34.44 -0.29 -14.22 16 6 H 0.06 1.78 7.17 -52.48 -0.38 1.40 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.07 1.19 1.86 -68.87 -0.13 1.06 16 14 H 0.06 1.05 6.60 -51.93 -0.34 0.70 16 15 C -0.14 -2.19 9.01 37.16 0.33 -1.86 16 16 C 0.53 8.46 5.55 -10.99 -0.06 8.40 16 17 O -0.49 -9.10 13.01 5.55 0.07 -9.03 16 18 N -0.68 -8.87 4.28 -9.86 -0.04 -8.91 16 19 C 0.23 2.76 6.15 -83.69 -0.51 2.25 16 20 C -0.12 -1.26 8.68 -39.39 -0.34 -1.61 16 21 C -0.05 -0.34 10.04 -39.61 -0.40 -0.74 16 22 C -0.14 -0.86 10.04 -39.54 -0.40 -1.26 16 23 C -0.04 -0.35 9.55 -39.61 -0.38 -0.73 16 24 C -0.08 -0.90 6.86 -79.76 -0.55 -1.44 16 25 N 0.04 0.50 4.45 34.05 0.15 0.66 16 26 O -0.16 -2.21 18.46 -29.46 -0.54 -2.75 16 27 O -0.17 -2.45 16.20 -29.46 -0.48 -2.93 16 28 H 0.04 0.80 6.34 -51.93 -0.33 0.47 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.38 6.44 -51.93 -0.33 1.05 16 31 H 0.09 1.96 6.66 -51.93 -0.35 1.61 16 32 H 0.06 1.23 6.13 -51.93 -0.32 0.91 16 33 H 0.04 0.98 5.88 -51.93 -0.31 0.67 16 34 H 0.00 -0.02 6.31 -51.93 -0.33 -0.35 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.43 6.23 -51.93 -0.32 1.11 16 39 H 0.42 4.97 7.00 -40.82 -0.29 4.69 16 40 H 0.16 1.76 6.76 -52.49 -0.36 1.41 16 41 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.15 1.03 7.62 -52.49 -0.40 0.63 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -32.15 353.44 -8.60 -40.76 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.29 Total: 3.82 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.52 Total: -6.21 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.15 Total: -45.58 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.95 Total: -14.71 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.15 -8.60 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081017911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.840 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds