Wall clock time and date at job start Tue Mar 31 2020 12:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46910 * 109.46729 * 2 1 4 4 C 1.46895 * 110.99935 * 69.00669 * 3 2 1 5 5 C 1.50700 * 109.47572 * 66.04288 * 4 3 2 6 6 H 1.08006 * 119.99862 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00315 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99836 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47056 * 90.00101 * 9 7 5 11 11 H 1.48507 * 109.47204 * 209.99700 * 9 7 5 12 12 H 1.48493 * 109.47302 * 329.99823 * 9 7 5 13 13 C 1.46896 * 111.00032 * 305.04942 * 3 2 1 14 14 H 1.08995 * 109.47234 * 65.34296 * 13 3 2 15 15 C 1.52999 * 109.47210 * 185.34439 * 13 3 2 16 16 C 1.50700 * 109.47183 * 305.34488 * 13 3 2 17 17 O 1.21290 * 120.00037 * 332.24688 * 16 13 3 18 18 N 1.34775 * 120.00307 * 152.25152 * 16 13 3 19 19 C 1.39926 * 120.00368 * 185.17220 * 18 16 13 20 20 C 1.38897 * 120.06706 * 317.71890 * 19 18 16 21 21 C 1.38092 * 119.93049 * 179.97438 * 20 19 18 22 22 C 1.38312 * 120.06809 * 359.97438 * 21 20 19 23 23 C 1.38263 * 120.13850 * 0.02562 * 22 21 20 24 24 C 1.38136 * 120.07164 * 359.74987 * 23 22 21 25 25 N 1.48013 * 120.03218 * 180.28090 * 24 23 22 26 26 O 1.21799 * 120.00169 * 354.21652 * 25 24 23 27 27 O 1.21802 * 119.99788 * 174.22420 * 25 24 23 28 28 H 1.09005 * 109.47344 * 62.40277 * 1 2 3 29 29 H 1.08997 * 109.47372 * 182.40273 * 1 2 3 30 30 H 1.09002 * 109.47298 * 302.40043 * 1 2 3 31 31 H 1.08998 * 109.47122 * 119.99449 * 2 1 3 32 32 H 1.09001 * 109.46908 * 240.00375 * 2 1 3 33 33 H 1.08995 * 109.47026 * 186.04490 * 4 3 2 34 34 H 1.09004 * 109.47154 * 306.04110 * 4 3 2 35 35 H 0.96995 * 119.99485 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.46787 * 59.99989 * 15 13 3 37 37 H 1.08992 * 109.47050 * 179.97438 * 15 13 3 38 38 H 1.08994 * 109.47099 * 300.00336 * 15 13 3 39 39 H 0.97002 * 119.99620 * 5.16570 * 18 16 13 40 40 H 1.08000 * 120.03419 * 0.02562 * 20 19 18 41 41 H 1.07995 * 119.96446 * 179.97438 * 21 20 19 42 42 H 1.07992 * 119.92753 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.95985 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7318 2.0452 1.2804 5 6 2.5269 1.3838 2.3765 6 1 3.1804 0.5556 2.1451 7 6 2.4194 1.8353 3.6747 8 7 1.6232 2.8435 3.9565 9 14 3.4044 1.0150 5.0335 10 1 4.7190 1.6922 5.1697 11 1 2.6603 1.1163 6.3147 12 1 3.6171 -0.4154 4.6963 13 6 1.4525 2.1439 -1.1227 14 1 0.3748 2.2385 -0.9898 15 6 2.0848 3.5364 -1.1683 16 6 1.7378 1.4201 -2.4133 17 8 2.7155 0.7083 -2.5061 18 7 0.9068 1.5638 -3.4646 19 6 1.1101 0.8096 -4.6255 20 6 2.3944 0.6318 -5.1238 21 6 2.5919 -0.1136 -6.2694 22 6 1.5126 -0.6832 -6.9202 23 6 0.2329 -0.5080 -6.4266 24 6 0.0292 0.2326 -5.2785 25 7 -1.3403 0.4143 -4.7475 26 8 -2.2976 0.0017 -5.3775 27 8 -1.5101 0.9767 -3.6805 28 1 -0.3634 0.4761 -0.9108 29 1 -0.3634 -1.0267 0.0431 30 1 -0.3634 0.5507 0.8677 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.0070 3.0979 1.2163 34 1 0.6678 1.9606 1.5017 35 1 1.5478 3.1613 4.8698 36 1 3.1626 3.4418 -1.3012 37 1 1.6644 4.0992 -2.0016 38 1 1.8785 4.0599 -0.2348 39 1 0.1676 2.1901 -3.4163 40 1 3.2377 1.0753 -4.6153 41 1 3.5902 -0.2518 -6.6575 42 1 1.6696 -1.2653 -7.8161 43 1 -0.6077 -0.9545 -6.9369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081017911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:04 Heat of formation + Delta-G solvation = -12.353452 kcal Electronic energy + Delta-G solvation = -27918.464664 eV Core-core repulsion = 23967.012863 eV Total energy + Delta-G solvation = -3951.451801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.40447 -41.89691 -40.18896 -38.48530 -37.77577 -36.00224 -34.78247 -33.23299 -32.98279 -31.31880 -30.41368 -28.14042 -27.57819 -25.88442 -24.76994 -24.15850 -23.48267 -22.22967 -20.72992 -20.25268 -19.78857 -18.84572 -18.60494 -18.51449 -18.05565 -17.01888 -16.82339 -16.63991 -16.29573 -15.99886 -15.65200 -15.29957 -15.00118 -14.77188 -14.27658 -14.17463 -13.73253 -13.53520 -13.50814 -13.34600 -13.03929 -12.93042 -12.75551 -12.69605 -12.66612 -12.47760 -12.38840 -12.36614 -12.31489 -11.97814 -11.70704 -11.49335 -11.27502 -10.87629 -10.61093 -10.53995 -9.70263 -8.99859 -8.18352 -6.25789 -1.28033 -0.10879 0.24346 0.33013 1.27374 1.41582 1.42073 1.53090 1.67081 2.32507 2.41751 3.13164 3.18981 3.23653 3.44290 3.64544 3.92252 3.95204 4.05280 4.05895 4.10086 4.17252 4.36867 4.47287 4.50562 4.61911 4.70874 4.80039 4.87552 4.93321 4.95942 5.06220 5.14688 5.15391 5.15994 5.20129 5.33603 5.41440 5.55176 5.66239 5.97471 6.09971 6.28158 6.43079 6.56667 6.85082 6.89989 7.42158 8.92298 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.003265 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.928873 B = 8572.446373 C = 9021.636309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.056 3.944 3 N -0.522 5.522 4 C 0.204 3.796 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.063 3.937 14 H 0.066 0.934 15 C -0.135 4.135 16 C 0.539 3.461 17 O -0.523 6.523 18 N -0.668 5.668 19 C 0.200 3.800 20 C -0.136 4.136 21 C -0.032 4.032 22 C -0.115 4.115 23 C -0.041 4.041 24 C -0.092 4.092 25 N 0.039 4.961 26 O -0.160 6.160 27 O -0.209 6.209 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.024 0.976 34 H -0.023 1.023 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.425 0.575 40 H 0.144 0.856 41 H 0.182 0.818 42 H 0.192 0.808 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 -4.488 -25.921 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.072 4.072 3 N -0.246 5.246 4 C 0.079 3.921 5 C -0.559 4.559 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.194 1.194 13 C -0.049 4.049 14 H 0.084 0.916 15 C -0.192 4.192 16 C 0.327 3.673 17 O -0.397 6.397 18 N -0.319 5.319 19 C 0.103 3.897 20 C -0.157 4.157 21 C -0.051 4.051 22 C -0.134 4.134 23 C -0.060 4.060 24 C -0.179 4.179 25 N 0.550 4.450 26 O -0.379 6.379 27 O -0.412 6.412 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.042 0.958 34 H -0.005 1.005 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.267 0.733 40 H 0.162 0.838 41 H 0.199 0.801 42 H 0.209 0.791 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.854 -4.907 -25.973 26.446 hybrid contribution -1.493 0.294 1.694 2.277 sum -0.639 -4.613 -24.279 24.721 Atomic orbital electron populations 1.22291 0.97879 1.02286 1.01180 1.22045 0.92905 0.90706 1.01538 1.62161 1.57984 1.01838 1.02656 1.19535 0.93563 0.94358 0.84653 1.21401 1.25301 1.16680 0.92530 0.92673 1.25762 0.96602 0.95775 1.00977 1.70058 1.39159 1.27289 1.20480 0.85485 0.78616 0.78966 0.78162 1.19924 1.20710 1.19409 1.21629 0.99113 0.95453 0.88703 0.91639 1.21788 1.01427 0.92510 1.03496 1.20829 0.81529 0.80343 0.84608 1.90666 1.27707 1.38203 1.83094 1.43915 1.33459 1.42202 1.12276 1.17775 0.93161 0.92307 0.86475 1.21488 0.94435 1.02184 0.97557 1.22020 1.02325 0.89801 0.90907 1.21722 0.89176 1.00416 1.02102 1.21369 1.01430 0.92533 0.90658 1.21344 0.79648 1.12893 1.03982 1.43793 1.03688 0.97778 0.99732 1.94487 1.33385 1.51270 1.58724 1.94495 1.92321 1.44032 1.10320 0.92608 0.91554 0.93554 0.91741 0.91711 0.95765 1.00502 0.92717 0.92091 0.89088 0.91628 0.73306 0.83845 0.80082 0.79065 0.80880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.81 9.14 71.98 0.66 -6.15 16 2 C 0.06 2.39 5.41 86.30 0.47 2.86 16 3 N -0.52 -23.20 4.33 -879.94 -3.81 -27.01 16 4 C 0.20 10.67 4.43 85.56 0.38 11.05 16 5 C -0.52 -29.71 8.39 25.60 0.21 -29.50 16 6 H 0.06 3.17 7.17 -2.91 -0.02 3.15 16 7 C 0.01 0.40 5.46 84.65 0.46 0.87 16 8 N -0.93 -55.22 13.29 21.45 0.28 -54.94 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 C 0.06 2.25 1.86 44.17 0.08 2.33 16 14 H 0.07 2.30 6.60 -2.39 -0.02 2.28 16 15 C -0.13 -4.28 9.01 71.98 0.65 -3.64 16 16 C 0.54 17.44 5.55 87.66 0.49 17.93 16 17 O -0.52 -19.44 13.01 -3.06 -0.04 -19.48 16 18 N -0.67 -17.51 4.28 -303.51 -1.30 -18.81 16 19 C 0.20 4.63 6.15 38.15 0.23 4.87 16 20 C -0.14 -2.57 8.68 22.39 0.19 -2.38 16 21 C -0.03 -0.32 10.04 22.25 0.22 -0.10 16 22 C -0.12 -0.85 10.04 22.29 0.22 -0.63 16 23 C -0.04 -0.54 9.55 22.25 0.21 -0.32 16 24 C -0.09 -1.97 6.86 36.50 0.25 -1.72 16 25 N 0.04 1.02 4.45 -46.18 -0.21 0.81 16 26 O -0.16 -4.21 18.46 18.89 0.35 -3.86 16 27 O -0.21 -6.24 16.20 18.88 0.31 -5.93 16 28 H 0.05 2.00 6.34 -2.38 -0.02 1.98 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 1.96 6.44 -2.39 -0.02 1.95 16 31 H 0.06 3.00 6.66 -2.39 -0.02 2.98 16 32 H 0.06 2.70 6.13 -2.39 -0.01 2.68 16 33 H 0.02 1.33 5.88 -2.39 -0.01 1.31 16 34 H -0.02 -1.26 6.31 -2.38 -0.02 -1.28 16 35 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.33 6.23 -2.39 -0.01 2.31 16 39 H 0.43 10.20 7.00 -92.71 -0.65 9.56 16 40 H 0.14 3.12 6.76 -2.91 -0.02 3.10 16 41 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 42 H 0.19 -0.19 8.06 -2.91 -0.02 -0.22 16 43 H 0.17 1.62 7.62 -2.91 -0.02 1.60 16 Total: -1.00 -72.57 353.44 2.76 -69.81 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.41 Total: 17.03 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 4.74 Total: -4.52 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -5.03 Total: -99.94 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: 0.61 Total: -29.28 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -72.57 2.76 -69.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081017911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.453 kcal (2) G-P(sol) polarization free energy of solvation -72.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds