Wall clock time and date at job start Tue Mar 31 2020 12:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46927 * 2 1 4 4 C 1.46906 * 111.00036 * 299.29999 * 3 2 1 5 5 C 1.50705 * 109.47220 * 289.42904 * 4 3 2 6 6 H 1.07996 * 119.99547 * 4.94149 * 5 4 3 7 7 C 1.37872 * 119.99813 * 184.94319 * 5 4 3 8 8 N 1.31508 * 120.00308 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99711 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46809 * 60.00197 * 9 7 5 11 11 H 1.48497 * 109.46641 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46886 * 299.99720 * 9 7 5 13 13 C 1.46897 * 111.00424 * 63.25580 * 3 2 1 14 14 H 1.09007 * 109.46728 * 304.49697 * 13 3 2 15 15 C 1.52998 * 109.47441 * 184.49434 * 13 3 2 16 16 C 1.50703 * 109.46987 * 64.49098 * 13 3 2 17 17 O 1.21286 * 119.99713 * 13.41170 * 16 13 3 18 18 N 1.34780 * 120.00051 * 193.41803 * 16 13 3 19 19 C 1.39925 * 119.99963 * 184.96413 * 18 16 13 20 20 C 1.38891 * 120.06870 * 34.53791 * 19 18 16 21 21 C 1.38093 * 119.92387 * 179.69741 * 20 19 18 22 22 C 1.38299 * 120.07443 * 0.60091 * 21 20 19 23 23 C 1.38265 * 120.13571 * 359.67704 * 22 21 20 24 24 C 1.38129 * 120.07281 * 0.02562 * 23 22 21 25 25 N 1.48011 * 120.03666 * 180.02562 * 24 23 22 26 26 O 1.21810 * 119.99686 * 5.72494 * 25 24 23 27 27 O 1.21799 * 120.00260 * 185.72440 * 25 24 23 28 28 H 1.08994 * 109.46845 * 305.28232 * 1 2 3 29 29 H 1.08998 * 109.46788 * 65.28383 * 1 2 3 30 30 H 1.08999 * 109.46592 * 185.28692 * 1 2 3 31 31 H 1.08997 * 109.46995 * 240.00068 * 2 1 3 32 32 H 1.09000 * 109.47267 * 119.99423 * 2 1 3 33 33 H 1.09007 * 109.46791 * 49.42582 * 4 3 2 34 34 H 1.08993 * 109.46873 * 169.42738 * 4 3 2 35 35 H 0.96995 * 120.00368 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46877 * 299.99929 * 15 13 3 37 37 H 1.08996 * 109.47332 * 59.99756 * 15 13 3 38 38 H 1.08994 * 109.46873 * 180.02562 * 15 13 3 39 39 H 0.97001 * 119.99534 * 4.96064 * 18 16 13 40 40 H 1.08005 * 120.03704 * 0.02562 * 20 19 18 41 41 H 1.08005 * 119.96281 * 180.29651 * 21 20 19 42 42 H 1.07992 * 119.93278 * 179.69927 * 22 21 20 43 43 H 1.08001 * 119.95999 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5623 2.1051 -1.1960 5 6 2.2824 1.5735 -2.4085 6 1 2.9473 0.7277 -2.3139 7 6 2.0924 2.1669 -3.6384 8 7 1.2824 3.1966 -3.7536 9 14 2.9856 1.5084 -5.1411 10 1 2.6017 0.0912 -5.3634 11 1 2.6125 2.3144 -6.3312 12 1 4.4519 1.5960 -4.9232 13 6 1.6133 2.0871 1.2247 14 1 0.5300 2.0318 1.3327 15 6 2.0432 3.5530 1.1387 16 6 2.2706 1.4399 2.4164 17 8 3.1826 0.6568 2.2548 18 7 1.8449 1.7311 3.6616 19 6 2.5208 1.2119 4.7713 20 6 3.8988 1.0429 4.7304 21 6 4.5636 0.5362 5.8296 22 6 3.8574 0.1855 6.9658 23 6 2.4849 0.3472 7.0075 24 6 1.8147 0.8592 5.9136 25 7 0.3455 1.0325 5.9593 26 8 -0.2606 0.8227 6.9949 27 8 -0.2576 1.3849 4.9615 28 1 -0.3633 0.5936 0.8389 29 1 -0.3633 0.4297 -0.9335 30 1 -0.3632 -1.0233 0.0947 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 0.4889 1.9608 -1.3187 34 1 1.7756 3.1681 -1.0838 35 1 1.1485 3.6138 -4.6189 36 1 3.1264 3.6082 1.0307 37 1 1.5678 4.0211 0.2768 38 1 1.7421 4.0737 2.0476 39 1 1.0700 2.3006 3.7883 40 1 4.4504 1.3125 3.8418 41 1 5.6358 0.4089 5.8002 42 1 4.3790 -0.2152 7.8223 43 1 1.9362 0.0727 7.8963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081017912.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:08 Heat of formation + Delta-G solvation = -8.025246 kcal Electronic energy + Delta-G solvation = -27704.285537 eV Core-core repulsion = 23753.021421 eV Total energy + Delta-G solvation = -3951.264116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.43005 -41.89016 -40.17010 -38.55198 -37.80676 -36.01768 -34.75955 -33.30874 -32.97587 -31.25126 -30.29682 -28.23509 -27.57587 -25.95663 -24.72152 -24.14602 -23.53408 -22.18045 -20.69046 -20.24876 -19.81339 -18.86798 -18.60546 -18.51574 -18.06746 -16.98236 -16.86682 -16.63451 -16.31047 -15.94856 -15.66954 -15.33096 -15.00458 -14.78500 -14.29838 -14.18471 -13.82791 -13.52783 -13.48847 -13.30919 -12.98895 -12.91294 -12.76323 -12.71070 -12.61585 -12.46414 -12.38949 -12.35879 -12.31330 -11.93695 -11.72627 -11.54196 -11.26043 -10.86903 -10.61204 -10.50909 -9.62142 -8.96393 -8.16788 -6.23755 -1.27545 -0.10259 0.24441 0.31654 1.34134 1.41596 1.43601 1.51304 1.62344 2.34228 2.42367 3.12825 3.21087 3.22771 3.43451 3.64932 3.92061 3.96043 3.99993 4.03055 4.09276 4.21793 4.39062 4.49050 4.52933 4.59904 4.68847 4.78274 4.89856 4.94098 4.98931 5.06417 5.14666 5.16105 5.17248 5.20498 5.36171 5.44057 5.55600 5.67969 5.98968 6.11857 6.33797 6.42605 6.58521 6.85478 6.90699 7.43708 8.93250 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.003140 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.418586 B = 8914.360655 C = 9461.896730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.060 3.940 3 N -0.524 5.524 4 C 0.198 3.802 5 C -0.519 4.519 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.061 3.939 14 H 0.073 0.927 15 C -0.138 4.138 16 C 0.534 3.466 17 O -0.520 6.520 18 N -0.666 5.666 19 C 0.207 3.793 20 C -0.145 4.145 21 C -0.029 4.029 22 C -0.120 4.120 23 C -0.037 4.037 24 C -0.097 4.097 25 N 0.040 4.960 26 O -0.155 6.155 27 O -0.214 6.214 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.065 0.935 33 H -0.019 1.019 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.427 0.573 40 H 0.141 0.859 41 H 0.180 0.820 42 H 0.192 0.808 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -3.545 24.764 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.068 4.068 3 N -0.248 5.248 4 C 0.072 3.928 5 C -0.558 4.558 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.197 1.197 13 C -0.051 4.051 14 H 0.091 0.909 15 C -0.195 4.195 16 C 0.322 3.678 17 O -0.393 6.393 18 N -0.317 5.317 19 C 0.109 3.891 20 C -0.166 4.166 21 C -0.048 4.048 22 C -0.139 4.139 23 C -0.056 4.056 24 C -0.184 4.184 25 N 0.551 4.449 26 O -0.375 6.375 27 O -0.415 6.415 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.083 0.917 33 H -0.001 1.001 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.270 0.730 40 H 0.159 0.841 41 H 0.197 0.803 42 H 0.209 0.791 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.379 -3.992 24.285 25.424 hybrid contribution -1.671 0.254 -1.306 2.136 sum 4.708 -3.738 22.979 23.752 Atomic orbital electron populations 1.22310 0.97923 1.02368 1.01332 1.21986 0.92972 0.90465 1.01380 1.62070 1.59783 1.02117 1.00828 1.19673 0.92849 0.94157 0.86073 1.21381 1.26215 1.15130 0.93073 0.92932 1.25724 0.96251 0.95290 1.01768 1.70031 1.38163 1.23328 1.25500 0.85576 0.79040 0.78379 0.78452 1.19711 1.20714 1.19724 1.21609 0.98438 0.95952 0.89122 0.90929 1.21851 1.02444 0.91633 1.03578 1.20964 0.82777 0.80368 0.83672 1.90668 1.29388 1.33619 1.85633 1.44100 1.33395 1.50491 1.03729 1.17811 0.92404 0.93758 0.85160 1.21433 0.90446 1.03048 1.01716 1.21992 1.02993 0.89551 0.90216 1.21694 0.91457 1.00368 1.00342 1.21356 0.96070 0.92210 0.95953 1.21219 0.78071 1.18223 1.00932 1.43769 1.04143 0.97208 0.99749 1.94492 1.69391 1.53435 1.20210 1.94437 1.69809 1.51555 1.25673 0.92555 0.93530 0.91066 0.92070 0.91651 1.00128 0.95011 0.92738 0.92280 0.91288 0.89146 0.73040 0.84113 0.80271 0.79082 0.80716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.68 9.24 71.98 0.67 -6.01 16 2 C 0.06 2.49 5.57 86.30 0.48 2.97 16 3 N -0.52 -22.95 4.22 -879.88 -3.71 -26.66 16 4 C 0.20 10.16 4.30 85.56 0.37 10.52 16 5 C -0.52 -29.48 8.64 25.60 0.22 -29.26 16 6 H 0.05 3.02 7.24 -2.91 -0.02 3.00 16 7 C 0.01 0.44 5.46 84.65 0.46 0.91 16 8 N -0.93 -54.80 13.29 21.44 0.28 -54.52 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 C 0.06 2.14 2.28 44.17 0.10 2.24 16 14 H 0.07 2.44 6.07 -2.38 -0.01 2.43 16 15 C -0.14 -4.40 8.71 71.98 0.63 -3.77 16 16 C 0.53 17.36 6.18 87.66 0.54 17.90 16 17 O -0.52 -19.54 12.71 -3.05 -0.04 -19.58 16 18 N -0.67 -17.62 4.56 -303.50 -1.38 -19.00 16 19 C 0.21 4.87 6.24 38.15 0.24 5.11 16 20 C -0.15 -2.92 8.65 22.39 0.19 -2.72 16 21 C -0.03 -0.31 10.04 22.25 0.22 -0.09 16 22 C -0.12 -0.92 10.04 22.29 0.22 -0.69 16 23 C -0.04 -0.48 9.55 22.25 0.21 -0.26 16 24 C -0.10 -2.06 6.86 36.50 0.25 -1.81 16 25 N 0.04 1.04 4.45 -46.18 -0.21 0.83 16 26 O -0.16 -3.93 18.46 18.87 0.35 -3.58 16 27 O -0.21 -6.14 16.03 18.89 0.30 -5.83 16 28 H 0.06 1.92 6.14 -2.39 -0.01 1.91 16 29 H 0.05 1.94 6.48 -2.39 -0.02 1.92 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.06 2.76 7.06 -2.39 -0.02 2.75 16 32 H 0.07 2.62 6.17 -2.39 -0.01 2.61 16 33 H -0.02 -1.02 5.94 -2.38 -0.01 -1.04 16 34 H 0.03 1.71 5.38 -2.39 -0.01 1.69 16 35 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 2.48 6.01 -2.39 -0.01 2.47 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.43 10.39 6.52 -92.71 -0.60 9.78 16 40 H 0.14 3.37 6.50 -2.91 -0.02 3.35 16 41 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 42 H 0.19 -0.14 8.06 -2.91 -0.02 -0.17 16 43 H 0.18 1.54 7.62 -2.91 -0.02 1.52 16 Total: -1.00 -71.55 352.35 2.90 -68.65 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.46 Total: 17.94 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 4.81 Total: -4.96 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -5.01 Total: -99.35 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: 0.61 Total: -29.00 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.55 2.90 -68.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081017912.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.626 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds