Wall clock time and date at job start Tue Mar 31 2020 12:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47097 * 2 1 4 4 C 1.46902 * 110.99674 * 73.18129 * 3 2 1 5 5 C 1.50706 * 109.47016 * 284.36803 * 4 3 2 6 6 H 1.08000 * 119.99945 * 0.15739 * 5 4 3 7 7 C 1.37881 * 119.99852 * 180.16547 * 5 4 3 8 8 N 1.31513 * 119.99441 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99827 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47456 * 90.00686 * 9 7 5 11 11 H 1.48511 * 109.46844 * 210.00001 * 9 7 5 12 12 H 1.48494 * 109.47667 * 329.99735 * 9 7 5 13 13 C 1.46896 * 111.00252 * 197.13277 * 3 2 1 14 14 H 1.08997 * 109.47248 * 186.04786 * 13 3 2 15 15 C 1.53001 * 109.47206 * 306.04953 * 13 3 2 16 16 C 1.50706 * 109.46911 * 66.04658 * 13 3 2 17 17 O 1.21275 * 120.00129 * 0.02562 * 16 13 3 18 18 N 1.34777 * 119.99418 * 180.02562 * 16 13 3 19 19 C 1.39927 * 119.99324 * 185.19621 * 18 16 13 20 20 C 1.38890 * 120.07381 * 320.85742 * 19 18 16 21 21 C 1.38094 * 119.92791 * 179.69956 * 20 19 18 22 22 C 1.38293 * 120.07307 * 0.60006 * 21 20 19 23 23 C 1.38264 * 120.14208 * 359.67575 * 22 21 20 24 24 N 1.48013 * 119.96737 * 179.97438 * 23 22 21 25 25 O 1.21805 * 120.00370 * 180.02562 * 24 23 22 26 26 O 1.21805 * 119.99928 * 0.02739 * 24 23 22 27 27 C 1.38134 * 120.06759 * 0.02562 * 23 22 21 28 28 H 1.09005 * 109.47174 * 49.00051 * 1 2 3 29 29 H 1.09008 * 109.46994 * 168.99531 * 1 2 3 30 30 H 1.09001 * 109.47293 * 288.99716 * 1 2 3 31 31 H 1.09003 * 109.47296 * 240.00146 * 2 1 3 32 32 H 1.08996 * 109.47395 * 120.00553 * 2 1 3 33 33 H 1.08995 * 109.47276 * 44.36567 * 4 3 2 34 34 H 1.09003 * 109.47144 * 164.37220 * 4 3 2 35 35 H 0.97003 * 119.99302 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47509 * 179.97438 * 15 13 3 37 37 H 1.09006 * 109.46971 * 299.99934 * 15 13 3 38 38 H 1.08997 * 109.47154 * 59.99775 * 15 13 3 39 39 H 0.97000 * 120.00359 * 5.19410 * 18 16 13 40 40 H 1.08001 * 120.03268 * 359.97438 * 20 19 18 41 41 H 1.08004 * 119.96015 * 180.29102 * 21 20 19 42 42 H 1.08002 * 119.93156 * 179.69664 * 22 21 20 43 43 H 1.08001 * 120.03477 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8209 2.0135 1.3128 5 6 0.3666 2.3695 1.4844 6 1 -0.3399 2.1483 0.6980 7 6 -0.0620 2.9776 2.6453 8 7 -1.3310 3.2886 2.7947 9 14 1.1599 3.3596 4.0055 10 1 1.7245 4.7171 3.7970 11 1 0.4701 3.3070 5.3196 12 1 2.2563 2.3584 3.9817 13 6 3.4307 1.4445 -0.4040 14 1 3.7978 2.4648 -0.2926 15 6 4.2545 0.5066 0.4806 16 6 3.5593 1.0188 -1.8439 17 8 2.5726 0.6979 -2.4719 18 7 4.7709 0.9947 -2.4338 19 6 4.8789 0.7051 -3.7985 20 6 4.0706 -0.2695 -4.3692 21 6 4.1754 -0.5486 -5.7176 22 6 5.0925 0.1325 -6.4970 23 6 5.9026 1.0994 -5.9308 24 7 6.8832 1.8256 -6.7685 25 8 7.5975 2.6772 -6.2703 26 8 6.9759 1.5717 -7.9562 27 6 5.7984 1.3875 -4.5839 28 1 -0.3634 0.6742 -0.7756 29 1 -0.3633 -1.0088 -0.1962 30 1 -0.3634 0.3345 0.9717 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1199 1.3185 2.0974 34 1 2.4264 2.9176 1.3782 35 1 -1.6326 3.7161 3.6116 36 1 5.3014 0.5504 0.1806 37 1 4.1614 0.8145 1.5222 38 1 3.8874 -0.5136 0.3692 39 1 5.5680 1.1782 -1.9123 40 1 3.3579 -0.8055 -3.7600 41 1 3.5438 -1.3031 -6.1629 42 1 5.1759 -0.0910 -7.5504 43 1 6.4312 2.1432 -4.1422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:14 Heat of formation + Delta-G solvation = 11.169633 kcal Electronic energy + Delta-G solvation = -26926.898087 eV Core-core repulsion = 22976.466324 eV Total energy + Delta-G solvation = -3950.431763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.43338 -41.01440 -39.26818 -37.17452 -36.80637 -35.18418 -32.88768 -32.25615 -31.75795 -30.16397 -29.20065 -26.92081 -26.85284 -24.87272 -23.20035 -22.75515 -22.31469 -20.99133 -19.54602 -19.46536 -18.87424 -17.77740 -17.63613 -16.98706 -16.70817 -16.60750 -15.92812 -14.93640 -14.92871 -14.65869 -14.48632 -14.23572 -14.00216 -13.52999 -13.46231 -12.81159 -12.66047 -12.51062 -12.31563 -12.14232 -11.83736 -11.79175 -11.52604 -11.48677 -11.38100 -11.16599 -11.03059 -10.85349 -10.73233 -10.49218 -10.18886 -10.07443 -9.90717 -9.50737 -9.09720 -8.85932 -8.58137 -7.54044 -6.08708 -4.05069 -0.44333 0.49610 1.08154 1.09554 2.39378 2.58628 3.00033 3.21545 3.28204 3.30399 4.04555 4.25150 4.35056 4.36116 4.43222 4.50246 4.58740 4.79240 4.97084 5.02989 5.13640 5.21160 5.28154 5.48192 5.56224 5.61528 5.69892 5.72731 5.84448 5.98255 6.05833 6.09547 6.28204 6.33620 6.51796 6.63950 6.77156 6.95311 7.01838 7.35405 7.38261 7.54480 7.76480 7.85099 7.99090 8.59307 9.03810 9.51418 11.03399 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.002673 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.728809 B =10473.662486 C =10979.168468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 N -0.505 5.505 4 C 0.164 3.836 5 C -0.509 4.509 6 H 0.095 0.905 7 C 0.068 3.932 8 N -0.898 5.898 9 Si 0.870 3.130 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.065 3.935 14 H 0.109 0.891 15 C -0.184 4.184 16 C 0.523 3.477 17 O -0.488 6.488 18 N -0.682 5.682 19 C 0.162 3.838 20 C -0.067 4.067 21 C -0.097 4.097 22 C -0.074 4.074 23 C -0.027 4.027 24 N 0.030 4.970 25 O -0.161 6.161 26 O -0.160 6.160 27 C -0.088 4.088 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.020 0.980 33 H -0.005 1.005 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.414 0.586 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.009 -9.173 -12.646 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 N -0.229 5.229 4 C 0.038 3.962 5 C -0.547 4.547 6 H 0.113 0.887 7 C -0.133 4.133 8 N -0.537 5.537 9 Si 0.697 3.303 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.048 4.048 14 H 0.127 0.873 15 C -0.244 4.244 16 C 0.311 3.689 17 O -0.359 6.359 18 N -0.330 5.330 19 C 0.066 3.934 20 C -0.088 4.088 21 C -0.116 4.116 22 C -0.094 4.094 23 C -0.111 4.111 24 N 0.550 4.450 25 O -0.377 6.377 26 O -0.376 6.376 27 C -0.109 4.109 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.013 0.987 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.251 0.749 40 H 0.173 0.827 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 14.325 -9.368 -12.810 21.378 hybrid contribution 1.796 0.303 1.476 2.344 sum 16.120 -9.064 -11.333 21.690 Atomic orbital electron populations 1.21974 0.94241 0.98812 1.05038 1.21973 0.97495 0.88243 0.98331 1.61997 1.10793 1.17931 1.32136 1.20288 0.99034 0.93236 0.83640 1.21242 0.91838 1.38300 1.03327 0.88703 1.24901 0.94951 0.95490 0.98002 1.69881 1.14339 1.42272 1.27197 0.86956 0.81912 0.79126 0.82271 1.20237 1.21226 1.19425 1.21710 0.93190 1.00812 0.89125 0.87300 1.22496 0.99325 1.00772 1.01784 1.21219 0.81535 0.76222 0.89948 1.90704 1.36470 1.44055 1.64652 1.43765 1.10819 1.71706 1.06737 1.17445 0.96701 0.94319 0.84935 1.21813 0.97414 0.93689 0.95835 1.21141 0.97562 0.99905 0.93036 1.21059 0.93198 0.92974 1.02121 1.20763 0.97602 1.01312 0.91376 1.43603 1.00364 0.99744 1.01332 1.94550 1.40660 1.26049 1.76446 1.94537 1.74203 1.70315 0.98569 1.20728 1.00277 0.99152 0.90769 0.92302 0.95125 0.89301 0.92162 0.96144 0.98745 0.96110 0.92645 0.92411 0.90606 0.91671 0.74862 0.82675 0.83071 0.82899 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.55 16 2 C 0.07 1.23 4.05 -3.83 -0.02 1.21 16 3 N -0.50 -9.72 4.16 -229.47 -0.95 -10.67 16 4 C 0.16 3.62 3.16 -4.97 -0.02 3.61 16 5 C -0.51 -13.57 7.72 -34.44 -0.27 -13.84 16 6 H 0.10 2.76 5.84 -52.49 -0.31 2.46 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 9 Si 0.87 20.36 27.46 -169.99 -4.67 15.69 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -5.96 6.55 56.52 0.37 -5.59 16 13 C 0.06 0.92 2.72 -68.86 -0.19 0.73 16 14 H 0.11 1.44 7.83 -51.93 -0.41 1.04 16 15 C -0.18 -2.10 8.42 37.16 0.31 -1.79 16 16 C 0.52 6.92 6.53 -10.98 -0.07 6.85 16 17 O -0.49 -8.08 12.19 5.56 0.07 -8.01 16 18 N -0.68 -6.35 5.25 -9.86 -0.05 -6.40 16 19 C 0.16 1.55 6.23 -83.69 -0.52 1.03 16 20 C -0.07 -0.63 8.68 -39.39 -0.34 -0.97 16 21 C -0.10 -0.72 10.04 -39.61 -0.40 -1.12 16 22 C -0.07 -0.60 9.55 -39.55 -0.38 -0.98 16 23 C -0.03 -0.27 6.85 -79.98 -0.55 -0.82 16 24 N 0.03 0.36 4.45 33.95 0.15 0.51 16 25 O -0.16 -2.05 18.45 -29.46 -0.54 -2.60 16 26 O -0.16 -1.99 18.44 -29.46 -0.54 -2.53 16 27 C -0.09 -0.80 9.48 -39.39 -0.37 -1.18 16 28 H 0.06 1.27 7.79 -51.93 -0.40 0.86 16 29 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.09 2.04 5.81 -51.93 -0.30 1.74 16 31 H 0.06 1.03 5.82 -51.93 -0.30 0.72 16 32 H 0.02 0.36 6.95 -51.93 -0.36 0.00 16 33 H -0.01 -0.11 6.27 -51.93 -0.33 -0.44 16 34 H 0.02 0.45 7.16 -51.93 -0.37 0.08 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 0.45 7.45 -51.93 -0.39 0.06 16 37 H 0.07 0.97 7.16 -51.93 -0.37 0.60 16 38 H 0.06 0.76 6.72 -51.93 -0.35 0.41 16 39 H 0.41 2.55 8.10 -40.82 -0.33 2.22 16 40 H 0.16 1.60 6.52 -52.49 -0.34 1.26 16 41 H 0.15 0.72 8.06 -52.48 -0.42 0.29 16 42 H 0.15 1.00 7.60 -52.49 -0.40 0.60 16 43 H 0.16 1.23 7.61 -52.49 -0.40 0.83 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -32.21 351.68 -8.42 -40.63 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.37 Total: 1.90 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.58 Total: -8.03 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.08 Total: -42.35 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.02 Total: -13.14 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.67 Total: 15.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.21 -8.42 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.803 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds