Wall clock time and date at job start Tue Mar 31 2020 12:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47097 * 2 1 4 4 C 1.46902 * 110.99674 * 73.18129 * 3 2 1 5 5 C 1.50706 * 109.47016 * 284.36803 * 4 3 2 6 6 H 1.08000 * 119.99945 * 0.15739 * 5 4 3 7 7 C 1.37881 * 119.99852 * 180.16547 * 5 4 3 8 8 N 1.31513 * 119.99441 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99827 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47456 * 90.00686 * 9 7 5 11 11 H 1.48511 * 109.46844 * 210.00001 * 9 7 5 12 12 H 1.48494 * 109.47667 * 329.99735 * 9 7 5 13 13 C 1.46896 * 111.00252 * 197.13277 * 3 2 1 14 14 H 1.08997 * 109.47248 * 186.04786 * 13 3 2 15 15 C 1.53001 * 109.47206 * 306.04953 * 13 3 2 16 16 C 1.50706 * 109.46911 * 66.04658 * 13 3 2 17 17 O 1.21275 * 120.00129 * 0.02562 * 16 13 3 18 18 N 1.34777 * 119.99418 * 180.02562 * 16 13 3 19 19 C 1.39927 * 119.99324 * 185.19621 * 18 16 13 20 20 C 1.38890 * 120.07381 * 320.85742 * 19 18 16 21 21 C 1.38094 * 119.92791 * 179.69956 * 20 19 18 22 22 C 1.38293 * 120.07307 * 0.60006 * 21 20 19 23 23 C 1.38264 * 120.14208 * 359.67575 * 22 21 20 24 24 N 1.48013 * 119.96737 * 179.97438 * 23 22 21 25 25 O 1.21805 * 120.00370 * 180.02562 * 24 23 22 26 26 O 1.21805 * 119.99928 * 0.02739 * 24 23 22 27 27 C 1.38134 * 120.06759 * 0.02562 * 23 22 21 28 28 H 1.09005 * 109.47174 * 49.00051 * 1 2 3 29 29 H 1.09008 * 109.46994 * 168.99531 * 1 2 3 30 30 H 1.09001 * 109.47293 * 288.99716 * 1 2 3 31 31 H 1.09003 * 109.47296 * 240.00146 * 2 1 3 32 32 H 1.08996 * 109.47395 * 120.00553 * 2 1 3 33 33 H 1.08995 * 109.47276 * 44.36567 * 4 3 2 34 34 H 1.09003 * 109.47144 * 164.37220 * 4 3 2 35 35 H 0.97003 * 119.99302 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47509 * 179.97438 * 15 13 3 37 37 H 1.09006 * 109.46971 * 299.99934 * 15 13 3 38 38 H 1.08997 * 109.47154 * 59.99775 * 15 13 3 39 39 H 0.97000 * 120.00359 * 5.19410 * 18 16 13 40 40 H 1.08001 * 120.03268 * 359.97438 * 20 19 18 41 41 H 1.08004 * 119.96015 * 180.29102 * 21 20 19 42 42 H 1.08002 * 119.93156 * 179.69664 * 22 21 20 43 43 H 1.08001 * 120.03477 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8209 2.0135 1.3128 5 6 0.3666 2.3695 1.4844 6 1 -0.3399 2.1483 0.6980 7 6 -0.0620 2.9776 2.6453 8 7 -1.3310 3.2886 2.7947 9 14 1.1599 3.3596 4.0055 10 1 1.7245 4.7171 3.7970 11 1 0.4701 3.3070 5.3196 12 1 2.2563 2.3584 3.9817 13 6 3.4307 1.4445 -0.4040 14 1 3.7978 2.4648 -0.2926 15 6 4.2545 0.5066 0.4806 16 6 3.5593 1.0188 -1.8439 17 8 2.5726 0.6979 -2.4719 18 7 4.7709 0.9947 -2.4338 19 6 4.8789 0.7051 -3.7985 20 6 4.0706 -0.2695 -4.3692 21 6 4.1754 -0.5486 -5.7176 22 6 5.0925 0.1325 -6.4970 23 6 5.9026 1.0994 -5.9308 24 7 6.8832 1.8256 -6.7685 25 8 7.5975 2.6772 -6.2703 26 8 6.9759 1.5717 -7.9562 27 6 5.7984 1.3875 -4.5839 28 1 -0.3634 0.6742 -0.7756 29 1 -0.3633 -1.0088 -0.1962 30 1 -0.3634 0.3345 0.9717 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.1199 1.3185 2.0974 34 1 2.4264 2.9176 1.3782 35 1 -1.6326 3.7161 3.6116 36 1 5.3014 0.5504 0.1806 37 1 4.1614 0.8145 1.5222 38 1 3.8874 -0.5136 0.3692 39 1 5.5680 1.1782 -1.9123 40 1 3.3579 -0.8055 -3.7600 41 1 3.5438 -1.3031 -6.1629 42 1 5.1759 -0.0910 -7.5504 43 1 6.4312 2.1432 -4.1422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:11 Heat of formation + Delta-G solvation = -10.289059 kcal Electronic energy + Delta-G solvation = -26927.828606 eV Core-core repulsion = 22976.466324 eV Total energy + Delta-G solvation = -3951.362282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.29633 -41.94427 -40.19232 -38.46451 -37.71566 -36.09502 -34.74672 -33.20150 -32.90275 -31.24939 -30.67944 -28.46141 -27.68856 -25.91847 -24.07296 -23.91720 -23.72567 -22.13210 -20.86905 -20.28408 -19.78187 -19.13587 -18.64188 -18.13660 -17.67575 -17.59612 -16.78671 -16.44132 -16.10399 -15.91714 -15.66518 -15.38803 -15.11012 -14.83926 -14.52974 -14.28322 -13.63933 -13.53923 -13.34896 -13.32644 -13.04254 -12.99911 -12.73435 -12.71239 -12.61676 -12.38004 -12.34358 -12.32765 -12.10505 -11.96085 -11.74291 -11.50255 -11.10463 -10.81184 -10.64788 -10.54833 -9.63176 -8.99304 -8.18854 -6.19687 -1.27650 -0.18620 0.26353 0.28730 1.38066 1.39176 1.42063 1.48592 1.72955 2.29426 2.39632 3.11928 3.16251 3.40987 3.47823 3.61430 3.70433 3.92430 4.00143 4.02299 4.11608 4.33515 4.35973 4.52512 4.60728 4.62960 4.73235 4.80867 4.82365 4.88602 4.96875 5.01125 5.05343 5.09630 5.17086 5.20784 5.33367 5.52915 5.60173 5.68143 6.01195 6.20774 6.40398 6.44520 6.69105 6.88896 7.00819 7.40846 8.96796 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.002673 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.728809 B =10473.662486 C =10979.168468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.075 3.925 3 N -0.531 5.531 4 C 0.175 3.825 5 C -0.508 4.508 6 H 0.054 0.946 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.941 3.059 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.243 1.243 13 C 0.060 3.940 14 H 0.121 0.879 15 C -0.177 4.177 16 C 0.529 3.471 17 O -0.528 6.528 18 N -0.661 5.661 19 C 0.150 3.850 20 C -0.073 4.073 21 C -0.087 4.087 22 C -0.066 4.066 23 C -0.043 4.043 24 N 0.032 4.968 25 O -0.184 6.184 26 O -0.170 6.170 27 C -0.082 4.082 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.000 1.000 34 H 0.031 0.969 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.431 0.569 40 H 0.147 0.853 41 H 0.182 0.818 42 H 0.171 0.829 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.956 -10.279 -12.833 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.052 4.052 3 N -0.255 5.255 4 C 0.048 3.952 5 C -0.547 4.547 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.594 5.594 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.217 1.217 12 H -0.166 1.166 13 C -0.053 4.053 14 H 0.138 0.862 15 C -0.236 4.236 16 C 0.317 3.683 17 O -0.402 6.402 18 N -0.311 5.311 19 C 0.054 3.946 20 C -0.094 4.094 21 C -0.106 4.106 22 C -0.085 4.085 23 C -0.126 4.126 24 N 0.547 4.453 25 O -0.396 6.396 26 O -0.385 6.385 27 C -0.104 4.104 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.271 0.729 40 H 0.165 0.835 41 H 0.199 0.801 42 H 0.188 0.812 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 17.367 -10.466 -13.016 24.095 hybrid contribution 0.815 0.571 1.372 1.695 sum 18.183 -9.896 -11.643 23.751 Atomic orbital electron populations 1.21822 0.96227 0.99384 1.01777 1.21893 0.95693 0.88257 0.99397 1.61736 1.14917 1.18396 1.30475 1.20012 0.95773 0.93888 0.85510 1.21538 0.93936 1.37120 1.02068 0.92827 1.25821 0.96804 0.95632 1.01020 1.70063 1.16918 1.44277 1.28148 0.85818 0.79804 0.79729 0.78187 1.19384 1.21678 1.16633 1.21815 0.90602 1.02531 0.90307 0.86161 1.22435 1.01311 0.99486 1.00406 1.20961 0.82065 0.75800 0.89438 1.90699 1.38020 1.46154 1.65314 1.43402 1.10239 1.70572 1.06853 1.17471 0.97302 0.94973 0.84872 1.21925 0.97032 0.93683 0.96711 1.21440 0.97178 0.99886 0.92126 1.21354 0.92260 0.91848 1.03083 1.20940 0.97936 1.02151 0.91587 1.43865 1.00438 0.99590 1.01380 1.94540 1.41622 1.26950 1.76460 1.94520 1.74465 1.70408 0.99145 1.20774 1.00039 0.99054 0.90485 0.94996 0.92570 0.92988 0.90532 0.95257 0.98215 0.95120 0.92822 0.88141 0.91587 0.91937 0.72857 0.83504 0.80099 0.81158 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.51 71.98 0.61 -4.93 16 2 C 0.08 2.69 4.05 86.30 0.35 3.04 16 3 N -0.53 -20.00 4.16 -879.92 -3.66 -23.66 16 4 C 0.17 7.57 3.16 85.56 0.27 7.84 16 5 C -0.51 -27.84 7.72 25.60 0.20 -27.64 16 6 H 0.05 3.31 5.84 -2.91 -0.02 3.30 16 7 C 0.00 0.20 5.47 84.66 0.46 0.66 16 8 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 9 Si 0.94 41.82 27.46 68.60 1.88 43.70 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.24 -9.67 6.55 99.48 0.65 -9.02 16 13 C 0.06 1.55 2.72 44.17 0.12 1.67 16 14 H 0.12 2.83 7.83 -2.39 -0.02 2.81 16 15 C -0.18 -3.39 8.42 71.98 0.61 -2.78 16 16 C 0.53 12.85 6.53 87.66 0.57 13.42 16 17 O -0.53 -16.86 12.19 -3.01 -0.04 -16.90 16 18 N -0.66 -10.40 5.25 -303.51 -1.59 -11.99 16 19 C 0.15 2.50 6.23 38.15 0.24 2.74 16 20 C -0.07 -1.21 8.68 22.39 0.19 -1.02 16 21 C -0.09 -1.05 10.04 22.25 0.22 -0.82 16 22 C -0.07 -0.90 9.55 22.29 0.21 -0.69 16 23 C -0.04 -0.77 6.85 36.36 0.25 -0.52 16 24 N 0.03 0.72 4.45 -46.51 -0.21 0.51 16 25 O -0.18 -4.54 18.45 18.88 0.35 -4.19 16 26 O -0.17 -4.02 18.44 18.88 0.35 -3.67 16 27 C -0.08 -1.33 9.48 22.39 0.21 -1.11 16 28 H 0.03 1.44 7.79 -2.38 -0.02 1.42 16 29 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.05 2.50 5.81 -2.39 -0.01 2.49 16 31 H 0.08 2.51 5.82 -2.39 -0.01 2.49 16 32 H 0.03 1.00 6.95 -2.39 -0.02 0.98 16 33 H 0.00 0.01 6.27 -2.39 -0.01 -0.01 16 34 H 0.03 1.27 7.16 -2.39 -0.02 1.26 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.10 1.05 7.45 -2.39 -0.02 1.03 16 37 H 0.07 1.44 7.16 -2.38 -0.02 1.42 16 38 H 0.06 1.25 6.72 -2.39 -0.02 1.23 16 39 H 0.43 3.67 8.10 -92.71 -0.75 2.92 16 40 H 0.15 2.78 6.52 -2.91 -0.02 2.76 16 41 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.17 1.72 7.60 -2.91 -0.02 1.70 16 43 H 0.17 2.25 7.61 -2.91 -0.02 2.23 16 Total: -1.00 -73.58 351.68 2.16 -71.42 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.26 Total: 13.25 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.52 Total: -10.15 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -5.16 Total: -93.47 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: 0.66 Total: -24.76 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.88 Total: 43.70 kcal Total: -73.58 2.16 -71.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.133 kcal (2) G-P(sol) polarization free energy of solvation -73.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds