Wall clock time and date at job start Tue Mar 31 2020 12:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.47230 * 2 1 4 4 C 1.46899 * 110.99721 * 302.21553 * 3 2 1 5 5 C 1.50694 * 109.46996 * 298.68732 * 4 3 2 6 6 H 1.08001 * 120.00572 * 2.91303 * 5 4 3 7 7 C 1.37881 * 119.99696 * 182.90866 * 5 4 3 8 8 N 1.31520 * 119.99861 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00210 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47071 * 90.00169 * 9 7 5 11 11 H 1.48502 * 109.47121 * 209.99639 * 9 7 5 12 12 H 1.48498 * 109.47188 * 329.99713 * 9 7 5 13 13 C 1.46898 * 110.99813 * 66.16488 * 3 2 1 14 14 H 1.08999 * 109.47857 * 297.23885 * 13 3 2 15 15 C 1.53006 * 109.47029 * 177.23856 * 13 3 2 16 16 C 1.50706 * 109.47097 * 57.24155 * 13 3 2 17 17 O 1.21281 * 119.99808 * 28.39571 * 16 13 3 18 18 N 1.34774 * 120.00008 * 208.39328 * 16 13 3 19 19 C 1.39926 * 119.99844 * 175.06972 * 18 16 13 20 20 C 1.38891 * 120.07202 * 327.29214 * 19 18 16 21 21 C 1.38095 * 119.93026 * 179.69923 * 20 19 18 22 22 C 1.38307 * 120.06626 * 0.60150 * 21 20 19 23 23 C 1.38251 * 120.14159 * 359.67592 * 22 21 20 24 24 N 1.48023 * 119.96435 * 180.02562 * 23 22 21 25 25 O 1.21795 * 119.99981 * 180.02562 * 24 23 22 26 26 O 1.21799 * 119.99521 * 0.02562 * 24 23 22 27 27 C 1.38132 * 120.07656 * 0.02562 * 23 22 21 28 28 H 1.08995 * 109.46918 * 304.59631 * 1 2 3 29 29 H 1.08999 * 109.46455 * 64.59719 * 1 2 3 30 30 H 1.09004 * 109.46863 * 184.59547 * 1 2 3 31 31 H 1.09003 * 109.47475 * 239.99816 * 2 1 3 32 32 H 1.09008 * 109.47124 * 119.99719 * 2 1 3 33 33 H 1.09002 * 109.47236 * 58.68797 * 4 3 2 34 34 H 1.08999 * 109.46919 * 178.68653 * 4 3 2 35 35 H 0.97000 * 120.00225 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.46973 * 180.02562 * 15 13 3 37 37 H 1.08999 * 109.46757 * 300.00108 * 15 13 3 38 38 H 1.08997 * 109.46757 * 60.00428 * 15 13 3 39 39 H 0.96997 * 120.00006 * 354.79561 * 18 16 13 40 40 H 1.08004 * 120.03743 * 0.02562 * 20 19 18 41 41 H 1.07999 * 119.96229 * 180.30121 * 21 20 19 42 42 H 1.07999 * 119.92477 * 179.70352 * 22 21 20 43 43 H 1.07996 * 120.04063 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5059 2.1250 -1.1603 5 6 1.9893 1.4696 -2.4283 6 1 2.5763 0.5644 -2.3785 7 6 1.6820 2.0256 -3.6520 8 7 2.1035 1.4533 -4.7587 9 14 0.6672 3.5915 -3.7382 10 1 1.5711 4.7694 -3.7090 11 1 -0.1197 3.6026 -4.9976 12 1 -0.2565 3.6473 -2.5769 13 6 1.6727 2.0660 1.2545 14 1 0.5883 2.1218 1.3498 15 6 2.2573 3.4800 1.2458 16 6 2.2403 1.2950 2.4183 17 8 3.2443 0.6303 2.2735 18 7 1.6321 1.3441 3.6200 19 6 2.0977 0.5486 4.6728 20 6 2.6499 -0.6987 4.4112 21 6 3.1142 -1.4787 5.4519 22 6 3.0184 -1.0243 6.7546 23 6 2.4641 0.2143 7.0189 24 7 2.3640 0.6970 8.4146 25 8 1.8754 1.7879 8.6481 26 8 2.7705 0.0032 9.3294 27 6 2.0034 1.0020 5.9819 28 1 -0.3633 0.5835 0.8459 29 1 -0.3632 0.4409 -0.9283 30 1 -0.3633 -1.0244 0.0823 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 0.4161 2.1196 -1.1412 34 1 1.8648 3.1535 -1.1232 35 1 1.8877 1.8446 -5.6196 36 1 2.0002 3.9851 2.1767 37 1 3.3417 3.4241 1.1505 38 1 1.8468 4.0376 0.4040 39 1 0.8741 1.9338 3.7562 40 1 2.7209 -1.0560 3.3944 41 1 3.5481 -2.4466 5.2486 42 1 3.3779 -1.6383 7.5672 43 1 1.5708 1.9697 6.1889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:23 Heat of formation + Delta-G solvation = 8.668479 kcal Electronic energy + Delta-G solvation = -27016.031491 eV Core-core repulsion = 23065.491270 eV Total energy + Delta-G solvation = -3950.540222 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.45392 -41.06813 -39.28139 -37.25315 -36.82850 -35.19428 -32.78534 -32.28968 -31.98284 -30.37320 -29.14414 -26.96853 -26.87553 -24.72445 -23.24034 -22.96654 -22.61463 -21.00043 -19.50466 -19.32801 -18.86307 -17.79208 -17.57081 -17.00407 -16.80631 -16.70020 -15.80237 -15.38012 -15.10952 -14.68200 -14.55907 -14.13850 -13.99693 -13.52621 -13.29968 -12.85220 -12.65120 -12.48154 -12.38840 -12.19890 -12.10588 -11.83271 -11.57124 -11.50069 -11.42198 -11.40114 -11.18204 -10.95699 -10.80200 -10.68716 -10.20741 -9.98219 -9.97162 -9.65804 -9.31755 -8.82122 -8.65301 -7.53974 -6.13510 -4.11595 -0.45738 0.49064 1.06903 1.07869 2.34309 2.56138 3.00852 3.19638 3.26314 3.28299 4.02969 4.24732 4.32009 4.33636 4.39447 4.46120 4.58793 4.79666 4.96193 5.12807 5.17976 5.21979 5.27075 5.51226 5.56446 5.61435 5.64603 5.71481 5.75898 5.83426 5.94629 6.02520 6.14465 6.25910 6.29805 6.40454 6.66289 6.81277 6.89651 6.92619 7.36634 7.42591 7.70439 7.77244 7.96026 8.53253 8.94970 9.46623 10.99373 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029794 B = 0.002636 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.571380 B =10619.419592 C =11115.689377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.502 5.502 4 C 0.159 3.841 5 C -0.509 4.509 6 H 0.082 0.918 7 C 0.070 3.930 8 N -0.897 5.897 9 Si 0.872 3.128 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.065 3.935 14 H 0.057 0.943 15 C -0.143 4.143 16 C 0.524 3.476 17 O -0.488 6.488 18 N -0.680 5.680 19 C 0.166 3.834 20 C -0.073 4.073 21 C -0.094 4.094 22 C -0.077 4.077 23 C -0.025 4.025 24 N 0.030 4.970 25 O -0.162 6.162 26 O -0.160 6.160 27 C -0.094 4.094 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.056 0.944 33 H -0.005 1.005 34 H 0.031 0.969 35 H 0.264 0.736 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.415 0.585 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 -2.141 21.032 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.072 4.072 3 N -0.227 5.227 4 C 0.034 3.966 5 C -0.548 4.548 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.048 4.048 14 H 0.075 0.925 15 C -0.201 4.201 16 C 0.311 3.689 17 O -0.359 6.359 18 N -0.327 5.327 19 C 0.069 3.931 20 C -0.093 4.093 21 C -0.113 4.113 22 C -0.097 4.097 23 C -0.108 4.108 24 N 0.550 4.450 25 O -0.378 6.378 26 O -0.376 6.376 27 C -0.116 4.116 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.012 0.988 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.252 0.748 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.171 0.829 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.944 -2.812 19.886 20.177 hybrid contribution -1.884 1.373 0.310 2.351 sum -3.828 -1.439 20.196 20.606 Atomic orbital electron populations 1.22411 0.99243 1.01124 1.01972 1.22112 0.91903 0.90485 1.02676 1.62136 1.59217 1.01940 0.99370 1.20322 0.93298 0.94440 0.88580 1.20964 1.33949 1.12049 0.87795 0.90009 1.24880 0.95651 0.97007 0.95630 1.69883 1.45949 1.40111 0.97650 0.86916 0.80902 0.84495 0.77760 1.20052 1.21166 1.19303 1.21589 0.97924 0.95034 0.90213 0.92514 1.21849 1.03104 0.93007 1.02145 1.21207 0.83561 0.81310 0.82778 1.90714 1.23058 1.39494 1.82623 1.43847 1.34955 1.43849 1.10040 1.17476 0.98131 0.90837 0.86613 1.21794 0.94490 0.91075 1.01961 1.21141 0.98981 1.00871 0.90285 1.21052 0.96364 0.93217 0.99030 1.20744 1.11077 0.98033 0.80949 1.43600 0.97961 1.00230 1.03233 1.94543 1.45144 1.07935 1.90148 1.94537 1.50015 1.55385 1.37661 1.20630 1.00366 1.00515 0.90041 0.94320 0.90929 0.92993 0.88859 0.92566 0.98762 0.95140 0.92566 0.92558 0.90772 0.90328 0.74839 0.82537 0.82996 0.82886 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.98 9.16 37.16 0.34 -2.64 16 2 C 0.06 1.01 5.42 -3.82 -0.02 0.99 16 3 N -0.50 -9.60 4.35 -229.46 -1.00 -10.60 16 4 C 0.16 3.49 3.12 -4.98 -0.02 3.47 16 5 C -0.51 -13.60 9.13 -34.44 -0.31 -13.92 16 6 H 0.08 2.41 6.90 -52.49 -0.36 2.05 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -26.52 13.96 55.43 0.77 -25.74 16 9 Si 0.87 20.25 27.41 -169.99 -4.66 15.59 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -5.87 6.63 56.52 0.37 -5.49 16 13 C 0.06 0.94 2.14 -68.86 -0.15 0.79 16 14 H 0.06 0.73 6.51 -51.93 -0.34 0.39 16 15 C -0.14 -1.91 8.92 37.16 0.33 -1.58 16 16 C 0.52 7.01 5.62 -10.98 -0.06 6.95 16 17 O -0.49 -8.13 13.07 5.56 0.07 -8.05 16 18 N -0.68 -6.51 5.34 -9.86 -0.05 -6.56 16 19 C 0.17 1.61 6.29 -83.69 -0.53 1.08 16 20 C -0.07 -0.71 8.66 -39.39 -0.34 -1.05 16 21 C -0.09 -0.71 10.04 -39.61 -0.40 -1.11 16 22 C -0.08 -0.62 9.55 -39.55 -0.38 -1.00 16 23 C -0.02 -0.24 6.85 -79.98 -0.55 -0.79 16 24 N 0.03 0.36 4.45 33.95 0.15 0.51 16 25 O -0.16 -2.02 18.45 -29.46 -0.54 -2.56 16 26 O -0.16 -1.96 18.44 -29.46 -0.54 -2.50 16 27 C -0.09 -0.85 9.47 -39.39 -0.37 -1.22 16 28 H 0.04 0.53 6.41 -51.93 -0.33 0.19 16 29 H 0.07 1.32 6.60 -51.93 -0.34 0.98 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.93 6.56 -51.93 -0.34 1.59 16 32 H 0.06 0.94 6.05 -51.92 -0.31 0.62 16 33 H -0.01 -0.11 5.55 -51.93 -0.29 -0.40 16 34 H 0.03 0.67 5.27 -51.93 -0.27 0.39 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.11 6.27 -51.93 -0.33 0.78 16 39 H 0.41 2.69 8.81 -40.82 -0.36 2.33 16 40 H 0.16 1.74 6.36 -52.48 -0.33 1.41 16 41 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.15 0.99 7.60 -52.49 -0.40 0.60 16 43 H 0.16 1.17 7.61 -52.49 -0.40 0.77 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -32.00 353.47 -8.29 -40.29 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.26 Total: 2.49 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.55 Total: -8.18 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.13 Total: -42.40 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.01 Total: -13.12 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.66 Total: 15.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.00 -8.29 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.958 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds