Wall clock time and date at job start Tue Mar 31 2020 12:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.47230 * 2 1 4 4 C 1.46899 * 110.99721 * 302.21553 * 3 2 1 5 5 C 1.50694 * 109.46996 * 298.68732 * 4 3 2 6 6 H 1.08001 * 120.00572 * 2.91303 * 5 4 3 7 7 C 1.37881 * 119.99696 * 182.90866 * 5 4 3 8 8 N 1.31520 * 119.99861 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00210 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47071 * 90.00169 * 9 7 5 11 11 H 1.48502 * 109.47121 * 209.99639 * 9 7 5 12 12 H 1.48498 * 109.47188 * 329.99713 * 9 7 5 13 13 C 1.46898 * 110.99813 * 66.16488 * 3 2 1 14 14 H 1.08999 * 109.47857 * 297.23885 * 13 3 2 15 15 C 1.53006 * 109.47029 * 177.23856 * 13 3 2 16 16 C 1.50706 * 109.47097 * 57.24155 * 13 3 2 17 17 O 1.21281 * 119.99808 * 28.39571 * 16 13 3 18 18 N 1.34774 * 120.00008 * 208.39328 * 16 13 3 19 19 C 1.39926 * 119.99844 * 175.06972 * 18 16 13 20 20 C 1.38891 * 120.07202 * 327.29214 * 19 18 16 21 21 C 1.38095 * 119.93026 * 179.69923 * 20 19 18 22 22 C 1.38307 * 120.06626 * 0.60150 * 21 20 19 23 23 C 1.38251 * 120.14159 * 359.67592 * 22 21 20 24 24 N 1.48023 * 119.96435 * 180.02562 * 23 22 21 25 25 O 1.21795 * 119.99981 * 180.02562 * 24 23 22 26 26 O 1.21799 * 119.99521 * 0.02562 * 24 23 22 27 27 C 1.38132 * 120.07656 * 0.02562 * 23 22 21 28 28 H 1.08995 * 109.46918 * 304.59631 * 1 2 3 29 29 H 1.08999 * 109.46455 * 64.59719 * 1 2 3 30 30 H 1.09004 * 109.46863 * 184.59547 * 1 2 3 31 31 H 1.09003 * 109.47475 * 239.99816 * 2 1 3 32 32 H 1.09008 * 109.47124 * 119.99719 * 2 1 3 33 33 H 1.09002 * 109.47236 * 58.68797 * 4 3 2 34 34 H 1.08999 * 109.46919 * 178.68653 * 4 3 2 35 35 H 0.97000 * 120.00225 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.46973 * 180.02562 * 15 13 3 37 37 H 1.08999 * 109.46757 * 300.00108 * 15 13 3 38 38 H 1.08997 * 109.46757 * 60.00428 * 15 13 3 39 39 H 0.96997 * 120.00006 * 354.79561 * 18 16 13 40 40 H 1.08004 * 120.03743 * 0.02562 * 20 19 18 41 41 H 1.07999 * 119.96229 * 180.30121 * 21 20 19 42 42 H 1.07999 * 119.92477 * 179.70352 * 22 21 20 43 43 H 1.07996 * 120.04063 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5059 2.1250 -1.1603 5 6 1.9893 1.4696 -2.4283 6 1 2.5763 0.5644 -2.3785 7 6 1.6820 2.0256 -3.6520 8 7 2.1035 1.4533 -4.7587 9 14 0.6672 3.5915 -3.7382 10 1 1.5711 4.7694 -3.7090 11 1 -0.1197 3.6026 -4.9976 12 1 -0.2565 3.6473 -2.5769 13 6 1.6727 2.0660 1.2545 14 1 0.5883 2.1218 1.3498 15 6 2.2573 3.4800 1.2458 16 6 2.2403 1.2950 2.4183 17 8 3.2443 0.6303 2.2735 18 7 1.6321 1.3441 3.6200 19 6 2.0977 0.5486 4.6728 20 6 2.6499 -0.6987 4.4112 21 6 3.1142 -1.4787 5.4519 22 6 3.0184 -1.0243 6.7546 23 6 2.4641 0.2143 7.0189 24 7 2.3640 0.6970 8.4146 25 8 1.8754 1.7879 8.6481 26 8 2.7705 0.0032 9.3294 27 6 2.0034 1.0020 5.9819 28 1 -0.3633 0.5835 0.8459 29 1 -0.3632 0.4409 -0.9283 30 1 -0.3633 -1.0244 0.0823 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 0.4161 2.1196 -1.1412 34 1 1.8648 3.1535 -1.1232 35 1 1.8877 1.8446 -5.6196 36 1 2.0002 3.9851 2.1767 37 1 3.3417 3.4241 1.1505 38 1 1.8468 4.0376 0.4040 39 1 0.8741 1.9338 3.7562 40 1 2.7209 -1.0560 3.3944 41 1 3.5481 -2.4466 5.2486 42 1 3.3779 -1.6383 7.5672 43 1 1.5708 1.9697 6.1889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:19 Heat of formation + Delta-G solvation = -12.945177 kcal Electronic energy + Delta-G solvation = -27016.968730 eV Core-core repulsion = 23065.491270 eV Total energy + Delta-G solvation = -3951.477460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.30169 -42.01528 -40.21604 -38.54789 -37.71813 -36.10999 -34.72506 -33.33651 -32.92676 -31.38165 -30.63680 -28.45957 -27.69521 -25.89385 -24.52744 -23.95965 -23.62637 -22.13651 -20.68123 -20.29701 -19.76961 -19.02419 -18.64460 -18.34394 -17.79419 -17.54825 -16.79132 -16.69893 -16.30537 -16.14301 -15.54571 -15.41146 -15.01446 -14.69226 -14.52871 -14.29298 -13.87185 -13.67463 -13.45350 -13.27784 -13.05407 -13.02464 -12.72830 -12.72514 -12.55084 -12.44336 -12.37793 -12.34457 -12.32504 -11.87487 -11.85554 -11.54652 -11.29789 -10.92592 -10.72882 -10.57517 -9.59567 -8.98540 -8.24791 -6.28128 -1.28213 -0.20198 0.25500 0.27755 1.36033 1.37422 1.38936 1.48644 1.68616 2.28652 2.36689 3.05889 3.15440 3.38491 3.45564 3.60091 3.67067 3.90725 3.97840 4.03130 4.06395 4.20144 4.34260 4.41630 4.54128 4.58703 4.60129 4.76568 4.82425 4.90334 4.91315 4.95821 5.02378 5.05690 5.17421 5.22862 5.25298 5.39013 5.50167 5.58307 5.93596 6.14813 6.32216 6.44823 6.63949 6.78465 6.95092 7.34568 8.91952 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029794 B = 0.002636 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.571380 B =10619.419592 C =11115.689377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.061 3.939 3 N -0.528 5.528 4 C 0.171 3.829 5 C -0.512 4.512 6 H 0.033 0.967 7 C 0.006 3.994 8 N -0.952 5.952 9 Si 0.945 3.055 10 H -0.266 1.266 11 H -0.288 1.288 12 H -0.239 1.239 13 C 0.061 3.939 14 H 0.086 0.914 15 C -0.143 4.143 16 C 0.531 3.469 17 O -0.528 6.528 18 N -0.660 5.660 19 C 0.154 3.846 20 C -0.082 4.082 21 C -0.085 4.085 22 C -0.068 4.068 23 C -0.039 4.039 24 N 0.032 4.968 25 O -0.179 6.179 26 O -0.172 6.172 27 C -0.084 4.084 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.005 0.995 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.432 0.568 40 H 0.142 0.858 41 H 0.180 0.820 42 H 0.171 0.829 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 -0.852 23.541 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.067 4.067 3 N -0.253 5.253 4 C 0.045 3.955 5 C -0.550 4.550 6 H 0.051 0.949 7 C -0.191 4.191 8 N -0.593 5.593 9 Si 0.768 3.232 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.162 1.162 13 C -0.050 4.050 14 H 0.104 0.896 15 C -0.200 4.200 16 C 0.319 3.681 17 O -0.402 6.402 18 N -0.308 5.308 19 C 0.058 3.942 20 C -0.103 4.103 21 C -0.103 4.103 22 C -0.088 4.088 23 C -0.122 4.122 24 N 0.548 4.452 25 O -0.393 6.393 26 O -0.387 6.387 27 C -0.106 4.106 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.272 0.728 40 H 0.160 0.840 41 H 0.197 0.803 42 H 0.189 0.811 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.702 -1.503 22.474 22.827 hybrid contribution -1.252 0.817 -0.405 1.548 sum -4.953 -0.686 22.070 22.629 Atomic orbital electron populations 1.22298 0.97105 1.02638 1.01732 1.21961 0.93611 0.90001 1.01135 1.61900 1.60319 1.02363 1.00701 1.20040 0.93460 0.94384 0.87607 1.21237 1.32756 1.10579 0.90471 0.94920 1.25863 0.97169 1.01079 0.95000 1.70067 1.48283 1.42484 0.98452 0.85756 0.79493 0.79422 0.78562 1.19141 1.21379 1.16219 1.21706 0.99713 0.95288 0.88329 0.89647 1.21875 1.01572 0.92450 1.04135 1.20913 0.83066 0.80664 0.83493 1.90714 1.24833 1.41248 1.83394 1.43488 1.34880 1.43660 1.08790 1.17475 0.99087 0.90984 0.86658 1.21859 0.94834 0.91658 1.01905 1.21406 0.97967 1.01593 0.89370 1.21330 0.95071 0.92626 0.99730 1.20915 1.12402 0.98981 0.79948 1.43838 0.97509 1.00000 1.03869 1.94533 1.45766 1.08406 1.90549 1.94526 1.50315 1.55371 1.38441 1.20688 0.99585 1.00915 0.89369 0.91390 0.93526 0.91259 0.93256 0.91251 0.97793 0.94321 0.92607 0.88388 0.92942 0.90947 0.72790 0.83978 0.80260 0.81123 0.81242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.37 9.16 71.98 0.66 -4.71 16 2 C 0.06 2.21 5.42 86.30 0.47 2.68 16 3 N -0.53 -20.01 4.35 -879.89 -3.83 -23.84 16 4 C 0.17 7.42 3.12 85.56 0.27 7.68 16 5 C -0.51 -28.38 9.13 25.60 0.23 -28.15 16 6 H 0.03 2.07 6.90 -2.91 -0.02 2.05 16 7 C 0.01 0.32 5.47 84.65 0.46 0.78 16 8 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 9 Si 0.94 41.51 27.41 68.60 1.88 43.39 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.24 -9.30 6.63 99.48 0.66 -8.64 16 13 C 0.06 1.63 2.14 44.17 0.09 1.72 16 14 H 0.09 1.81 6.51 -2.39 -0.02 1.80 16 15 C -0.14 -3.41 8.92 71.98 0.64 -2.77 16 16 C 0.53 13.09 5.62 87.66 0.49 13.59 16 17 O -0.53 -17.21 13.07 -3.03 -0.04 -17.25 16 18 N -0.66 -10.61 5.34 -303.50 -1.62 -12.23 16 19 C 0.15 2.60 6.29 38.15 0.24 2.84 16 20 C -0.08 -1.45 8.66 22.39 0.19 -1.25 16 21 C -0.08 -1.07 10.04 22.25 0.22 -0.85 16 22 C -0.07 -0.92 9.55 22.29 0.21 -0.71 16 23 C -0.04 -0.68 6.85 36.35 0.25 -0.43 16 24 N 0.03 0.70 4.45 -46.51 -0.21 0.49 16 25 O -0.18 -4.22 18.45 18.89 0.35 -3.87 16 26 O -0.17 -3.96 18.44 18.89 0.35 -3.61 16 27 C -0.08 -1.29 9.47 22.39 0.21 -1.08 16 28 H 0.07 1.62 6.41 -2.39 -0.02 1.60 16 29 H 0.05 1.64 6.60 -2.39 -0.02 1.63 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 31 H 0.05 2.19 6.56 -2.39 -0.02 2.17 16 32 H 0.07 2.31 6.05 -2.38 -0.01 2.30 16 33 H 0.00 0.19 5.55 -2.39 -0.01 0.17 16 34 H 0.04 1.62 5.27 -2.39 -0.01 1.61 16 35 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.83 6.27 -2.39 -0.01 1.81 16 39 H 0.43 3.81 8.81 -92.71 -0.82 3.00 16 40 H 0.14 3.02 6.36 -2.91 -0.02 3.00 16 41 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.17 1.71 7.60 -2.91 -0.02 1.69 16 43 H 0.17 2.05 7.61 -2.91 -0.02 2.02 16 Total: -1.00 -73.83 353.47 2.04 -71.80 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.20 Total: 14.11 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 4.65 Total: -10.65 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -5.36 Total: -93.92 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: 0.66 Total: -24.73 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.88 Total: 43.39 kcal Total: -73.83 2.04 -71.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.851 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds