Wall clock time and date at job start Tue Mar 31 2020 12:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46904 * 109.46955 * 2 1 4 4 C 1.46893 * 110.99859 * 300.77307 * 3 2 1 5 5 C 1.50700 * 109.47412 * 289.00039 * 4 3 2 6 6 H 1.07996 * 119.99712 * 4.78113 * 5 4 3 7 7 C 1.37877 * 119.99970 * 184.78206 * 5 4 3 8 8 N 1.31515 * 120.00454 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99828 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47356 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47206 * 120.00336 * 9 7 5 12 12 H 1.48504 * 109.47228 * 239.99906 * 9 7 5 13 13 C 1.46900 * 110.99939 * 64.73111 * 3 2 1 14 14 C 1.50703 * 109.47118 * 66.04557 * 13 3 2 15 15 O 1.21286 * 120.00120 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99743 * 179.97438 * 14 13 3 17 17 C 1.46506 * 120.00138 * 5.28014 * 16 14 13 18 18 C 1.39921 * 120.00045 * 185.28180 * 16 14 13 19 19 C 1.38874 * 120.07352 * 112.79773 * 18 16 14 20 20 C 1.38110 * 119.93217 * 180.02562 * 19 18 16 21 21 C 1.38281 * 120.06972 * 359.97438 * 20 19 18 22 22 N 1.48021 * 119.93006 * 180.02562 * 21 20 19 23 23 O 1.21804 * 119.99824 * 0.02562 * 22 21 20 24 24 O 1.21805 * 119.99983 * 179.97438 * 22 21 20 25 25 C 1.38281 * 120.13775 * 0.27330 * 21 20 19 26 26 C 1.38112 * 120.07527 * 359.45542 * 25 21 20 27 27 H 1.09001 * 109.47316 * 305.72089 * 1 2 3 28 28 H 1.08997 * 109.47542 * 65.72119 * 1 2 3 29 29 H 1.09004 * 109.47138 * 185.72271 * 1 2 3 30 30 H 1.08999 * 109.47305 * 240.00028 * 2 1 3 31 31 H 1.08998 * 109.47375 * 119.99746 * 2 1 3 32 32 H 1.09000 * 109.47014 * 49.00317 * 4 3 2 33 33 H 1.09006 * 109.47285 * 169.00058 * 4 3 2 34 34 H 0.96993 * 120.00371 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47098 * 306.04509 * 13 3 2 36 36 H 1.09003 * 109.46933 * 186.04310 * 13 3 2 37 37 H 1.08998 * 109.47057 * 270.00491 * 17 16 14 38 38 H 1.08998 * 109.47035 * 29.99797 * 17 16 14 39 39 H 1.08997 * 109.47011 * 150.00143 * 17 16 14 40 40 H 1.08007 * 120.03255 * 359.97438 * 19 18 16 41 41 H 1.07997 * 119.96345 * 179.97438 * 20 19 18 42 42 H 1.08007 * 119.95840 * 179.72486 * 25 21 20 43 43 H 1.07996 * 120.04025 * 180.25390 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5335 2.1152 -1.1783 5 6 2.2316 1.6013 -2.4110 6 1 2.9052 0.7603 -2.3390 7 6 2.0102 2.2049 -3.6307 8 7 1.1902 3.2293 -3.7184 9 14 2.8760 1.5683 -5.1586 10 1 3.7393 0.4161 -4.7946 11 1 1.8650 1.1333 -6.1555 12 1 3.7117 2.6492 -5.7406 13 6 1.6431 2.0765 1.2402 14 6 2.3587 1.4432 2.4055 15 8 3.1089 0.5082 2.2210 16 7 2.1658 1.9165 3.6526 17 6 1.1749 2.9688 3.8917 18 6 2.9120 1.4030 4.7190 19 6 3.8397 2.2059 5.3697 20 6 4.5750 1.6959 6.4216 21 6 4.3880 0.3873 6.8275 22 7 5.1774 -0.1560 7.9557 23 8 5.9903 0.5496 8.5257 24 8 5.0133 -1.3083 8.3146 25 6 3.4687 -0.4163 6.1784 26 6 2.7262 0.0894 5.1294 27 1 -0.3634 0.6000 0.8343 28 1 -0.3634 0.4225 -0.9367 29 1 -0.3633 -1.0226 0.1025 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4586 1.9657 -1.2804 33 1 1.7427 3.1783 -1.0588 34 1 1.0347 3.6542 -4.5764 35 1 0.5662 1.9965 1.3882 36 1 1.9231 3.1276 1.1696 37 1 1.6497 3.9447 3.7910 38 1 0.3683 2.8804 3.1638 39 1 0.7693 2.8641 4.8980 40 1 3.9865 3.2280 5.0528 41 1 5.2969 2.3197 6.9276 42 1 3.3282 -1.4393 6.4950 43 1 2.0055 -0.5375 4.6256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:59 Heat of formation + Delta-G solvation = 14.395823 kcal Electronic energy + Delta-G solvation = -26714.699488 eV Core-core repulsion = 22764.407623 eV Total energy + Delta-G solvation = -3950.291865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.40031 -40.92150 -39.11545 -36.91110 -36.77890 -35.74123 -32.67690 -31.85807 -31.76806 -29.85954 -28.40595 -27.49380 -26.31945 -25.09687 -23.57697 -23.26670 -22.66665 -20.50441 -19.64620 -19.14450 -18.87998 -17.74222 -17.60674 -16.87926 -16.45593 -16.19927 -15.47524 -15.30933 -14.83311 -14.67492 -14.28631 -14.22102 -14.07218 -13.53755 -13.37668 -13.17580 -12.96553 -12.70433 -12.39870 -12.08416 -11.90533 -11.79211 -11.67103 -11.43343 -11.35551 -11.26951 -11.05613 -10.78367 -10.69591 -10.24343 -10.05918 -10.02635 -9.80681 -9.60654 -9.26619 -9.00815 -8.49306 -7.32981 -6.09381 -4.09512 -0.47930 0.57241 1.02539 1.15565 2.45949 2.52232 2.87470 3.27796 3.35703 3.41684 4.01463 4.10418 4.35590 4.41775 4.50865 4.61521 4.70878 4.84098 4.87034 5.01264 5.10505 5.24391 5.27300 5.29093 5.35686 5.50200 5.53917 5.70762 5.73900 5.75445 5.89677 6.02534 6.09158 6.29824 6.40688 6.56595 6.82006 6.91498 7.13967 7.25575 7.41251 7.72375 7.94117 8.05828 8.12512 8.43225 8.98186 9.54748 11.01489 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.002462 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.282370 B =11370.839870 C =11560.830819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 N -0.518 5.518 4 C 0.189 3.811 5 C -0.502 4.502 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.038 3.962 14 C 0.520 3.480 15 O -0.495 6.495 16 N -0.596 5.596 17 C 0.078 3.922 18 C 0.210 3.790 19 C -0.123 4.123 20 C -0.043 4.043 21 C -0.054 4.054 22 N 0.032 4.968 23 O -0.164 6.164 24 O -0.163 6.163 25 C -0.041 4.041 26 C -0.107 4.107 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.001 0.999 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 -0.339 20.686 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.074 4.074 3 N -0.242 5.242 4 C 0.065 3.935 5 C -0.540 4.540 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.093 4.093 14 C 0.310 3.690 15 O -0.366 6.366 16 N -0.329 5.329 17 C -0.064 4.064 18 C 0.117 3.883 19 C -0.143 4.143 20 C -0.062 4.062 21 C -0.137 4.137 22 N 0.550 4.450 23 O -0.379 6.379 24 O -0.378 6.378 25 C -0.061 4.061 26 C -0.128 4.128 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.019 0.981 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.253 -0.470 19.789 19.834 hybrid contribution -0.346 -0.179 -0.566 0.688 sum -1.599 -0.650 19.222 19.300 Atomic orbital electron populations 1.22422 0.99675 1.00753 1.01963 1.22133 0.91479 0.90991 1.02774 1.62132 1.59600 1.02127 1.00342 1.19865 0.94202 0.93603 0.85838 1.21155 1.26001 1.15646 0.91245 0.91771 1.24959 0.95472 0.95037 0.99115 1.69948 1.36515 1.22339 1.25250 0.86444 0.79422 0.78922 0.82684 1.19603 1.21123 1.21010 1.22026 0.97410 0.99680 0.90189 1.21407 0.81988 0.83128 0.82527 1.90707 1.35684 1.26638 1.83571 1.45869 1.40103 1.41091 1.05866 1.21967 0.91313 0.89960 1.03143 1.18001 0.90337 0.92401 0.87512 1.21310 0.94947 1.01909 0.96157 1.20896 0.97813 0.92477 0.95056 1.21128 1.01672 0.96306 0.94612 1.43600 0.99772 1.00581 1.01025 1.94535 1.29689 1.57949 1.55718 1.94543 1.72137 1.02343 1.68820 1.20931 0.91515 1.00564 0.93096 1.21338 1.00264 0.95556 0.95623 0.94125 0.91208 0.93265 0.90090 0.91319 0.98137 0.95124 0.92973 0.92165 0.88053 0.91549 0.89554 0.90736 0.83170 0.82564 0.82597 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 9.22 37.15 0.34 -2.81 16 2 C 0.05 1.04 5.55 -3.83 -0.02 1.02 16 3 N -0.52 -10.64 4.40 -237.52 -1.05 -11.68 16 4 C 0.19 4.58 4.55 -4.98 -0.02 4.56 16 5 C -0.50 -13.67 8.67 -34.44 -0.30 -13.97 16 6 H 0.06 1.78 7.27 -52.49 -0.38 1.40 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 9 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.04 0.59 3.95 -4.97 -0.02 0.58 16 14 C 0.52 7.56 7.24 -10.98 -0.08 7.48 16 15 O -0.50 -9.06 13.90 5.55 0.08 -8.99 16 16 N -0.60 -6.17 2.93 -120.82 -0.35 -6.52 16 17 C 0.08 0.50 10.10 59.85 0.60 1.11 16 18 C 0.21 2.09 4.82 -83.70 -0.40 1.69 16 19 C -0.12 -1.03 9.85 -39.39 -0.39 -1.42 16 20 C -0.04 -0.37 9.55 -39.61 -0.38 -0.75 16 21 C -0.05 -0.55 6.85 -79.91 -0.55 -1.10 16 22 N 0.03 0.39 4.45 33.98 0.15 0.54 16 23 O -0.16 -2.08 18.44 -29.46 -0.54 -2.62 16 24 O -0.16 -2.11 18.44 -29.46 -0.54 -2.65 16 25 C -0.04 -0.39 9.55 -39.61 -0.38 -0.77 16 26 C -0.11 -1.05 9.32 -39.39 -0.37 -1.41 16 27 H 0.04 0.60 6.15 -51.93 -0.32 0.28 16 28 H 0.07 1.33 6.48 -51.93 -0.34 0.99 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.71 7.13 -51.93 -0.37 1.34 16 31 H 0.07 1.28 5.82 -51.93 -0.30 0.97 16 32 H 0.00 0.02 5.88 -51.93 -0.31 -0.28 16 33 H 0.03 0.79 7.83 -51.93 -0.41 0.38 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.06 0.82 5.16 -51.93 -0.27 0.55 16 36 H 0.10 1.47 7.87 -51.93 -0.41 1.06 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.53 6.48 -51.93 -0.34 0.19 16 39 H 0.07 0.35 8.05 -51.93 -0.42 -0.07 16 40 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.16 1.08 7.60 -52.49 -0.40 0.68 16 42 H 0.16 1.24 7.60 -52.48 -0.40 0.84 16 43 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -32.74 361.42 -8.63 -41.37 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.48 Total: -1.85 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.05 Total: -4.37 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: -0.51 Total: -42.65 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -1.01 Total: -14.26 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.74 -8.63 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.764 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds