Wall clock time and date at job start Tue Mar 31 2020 12:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46904 * 109.46955 * 2 1 4 4 C 1.46893 * 110.99859 * 300.77307 * 3 2 1 5 5 C 1.50700 * 109.47412 * 289.00039 * 4 3 2 6 6 H 1.07996 * 119.99712 * 4.78113 * 5 4 3 7 7 C 1.37877 * 119.99970 * 184.78206 * 5 4 3 8 8 N 1.31515 * 120.00454 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99828 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47356 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47206 * 120.00336 * 9 7 5 12 12 H 1.48504 * 109.47228 * 239.99906 * 9 7 5 13 13 C 1.46900 * 110.99939 * 64.73111 * 3 2 1 14 14 C 1.50703 * 109.47118 * 66.04557 * 13 3 2 15 15 O 1.21286 * 120.00120 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99743 * 179.97438 * 14 13 3 17 17 C 1.46506 * 120.00138 * 5.28014 * 16 14 13 18 18 C 1.39921 * 120.00045 * 185.28180 * 16 14 13 19 19 C 1.38874 * 120.07352 * 112.79773 * 18 16 14 20 20 C 1.38110 * 119.93217 * 180.02562 * 19 18 16 21 21 C 1.38281 * 120.06972 * 359.97438 * 20 19 18 22 22 N 1.48021 * 119.93006 * 180.02562 * 21 20 19 23 23 O 1.21804 * 119.99824 * 0.02562 * 22 21 20 24 24 O 1.21805 * 119.99983 * 179.97438 * 22 21 20 25 25 C 1.38281 * 120.13775 * 0.27330 * 21 20 19 26 26 C 1.38112 * 120.07527 * 359.45542 * 25 21 20 27 27 H 1.09001 * 109.47316 * 305.72089 * 1 2 3 28 28 H 1.08997 * 109.47542 * 65.72119 * 1 2 3 29 29 H 1.09004 * 109.47138 * 185.72271 * 1 2 3 30 30 H 1.08999 * 109.47305 * 240.00028 * 2 1 3 31 31 H 1.08998 * 109.47375 * 119.99746 * 2 1 3 32 32 H 1.09000 * 109.47014 * 49.00317 * 4 3 2 33 33 H 1.09006 * 109.47285 * 169.00058 * 4 3 2 34 34 H 0.96993 * 120.00371 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47098 * 306.04509 * 13 3 2 36 36 H 1.09003 * 109.46933 * 186.04310 * 13 3 2 37 37 H 1.08998 * 109.47057 * 270.00491 * 17 16 14 38 38 H 1.08998 * 109.47035 * 29.99797 * 17 16 14 39 39 H 1.08997 * 109.47011 * 150.00143 * 17 16 14 40 40 H 1.08007 * 120.03255 * 359.97438 * 19 18 16 41 41 H 1.07997 * 119.96345 * 179.97438 * 20 19 18 42 42 H 1.08007 * 119.95840 * 179.72486 * 25 21 20 43 43 H 1.07996 * 120.04025 * 180.25390 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5335 2.1152 -1.1783 5 6 2.2316 1.6013 -2.4110 6 1 2.9052 0.7603 -2.3390 7 6 2.0102 2.2049 -3.6307 8 7 1.1902 3.2293 -3.7184 9 14 2.8760 1.5683 -5.1586 10 1 3.7393 0.4161 -4.7946 11 1 1.8650 1.1333 -6.1555 12 1 3.7117 2.6492 -5.7406 13 6 1.6431 2.0765 1.2402 14 6 2.3587 1.4432 2.4055 15 8 3.1089 0.5082 2.2210 16 7 2.1658 1.9165 3.6526 17 6 1.1749 2.9688 3.8917 18 6 2.9120 1.4030 4.7190 19 6 3.8397 2.2059 5.3697 20 6 4.5750 1.6959 6.4216 21 6 4.3880 0.3873 6.8275 22 7 5.1774 -0.1560 7.9557 23 8 5.9903 0.5496 8.5257 24 8 5.0133 -1.3083 8.3146 25 6 3.4687 -0.4163 6.1784 26 6 2.7262 0.0894 5.1294 27 1 -0.3634 0.6000 0.8343 28 1 -0.3634 0.4225 -0.9367 29 1 -0.3633 -1.0226 0.1025 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4586 1.9657 -1.2804 33 1 1.7427 3.1783 -1.0588 34 1 1.0347 3.6542 -4.5764 35 1 0.5662 1.9965 1.3882 36 1 1.9231 3.1276 1.1696 37 1 1.6497 3.9447 3.7910 38 1 0.3683 2.8804 3.1638 39 1 0.7693 2.8641 4.8980 40 1 3.9865 3.2280 5.0528 41 1 5.2969 2.3197 6.9276 42 1 3.3282 -1.4393 6.4950 43 1 2.0055 -0.5375 4.6256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:56 Heat of formation + Delta-G solvation = -5.345927 kcal Electronic energy + Delta-G solvation = -26715.555555 eV Core-core repulsion = 22764.407623 eV Total energy + Delta-G solvation = -3951.147932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.29735 -41.86489 -40.10988 -38.31630 -37.71799 -36.74921 -34.71630 -32.66593 -32.53786 -31.24363 -30.03441 -28.23253 -27.55665 -26.35095 -25.00473 -24.29641 -23.65888 -21.80562 -20.49640 -20.35200 -19.79927 -18.65098 -18.61487 -18.34857 -17.72235 -17.44128 -16.66641 -16.58180 -16.11834 -15.92987 -15.45273 -15.33842 -14.91180 -14.52646 -14.42925 -14.24375 -14.07714 -13.94428 -13.50013 -13.27597 -13.12585 -12.95864 -12.81718 -12.69611 -12.67518 -12.59538 -12.52438 -12.36420 -12.33386 -11.94757 -11.61775 -11.37781 -10.91728 -10.77242 -10.58321 -10.48842 -9.87022 -8.91915 -8.19240 -6.26242 -1.34284 -0.11629 0.15506 0.31363 1.39088 1.41206 1.41748 1.53191 1.59703 2.14195 2.41163 3.12819 3.30999 3.32631 3.42008 3.54582 3.74937 3.84779 4.01802 4.16961 4.22195 4.24804 4.36727 4.45365 4.50220 4.58235 4.61219 4.64621 4.65736 4.88951 4.89919 4.97876 4.99326 5.02928 5.20585 5.23984 5.33873 5.47533 5.59442 5.67883 5.94402 6.10418 6.35871 6.44355 6.60773 6.87724 7.02783 7.42224 8.90855 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.002462 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.282370 B =11370.839870 C =11560.830819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.059 3.941 3 N -0.540 5.540 4 C 0.207 3.793 5 C -0.519 4.519 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.272 1.272 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.038 3.962 14 C 0.526 3.474 15 O -0.541 6.541 16 N -0.582 5.582 17 C 0.067 3.933 18 C 0.196 3.804 19 C -0.114 4.114 20 C -0.036 4.036 21 C -0.066 4.066 22 N 0.033 4.967 23 O -0.171 6.171 24 O -0.186 6.186 25 C -0.040 4.040 26 C -0.112 4.112 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.077 0.923 32 H -0.010 1.010 33 H 0.012 0.988 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.166 0.834 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 0.454 21.590 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.069 4.069 3 N -0.264 5.264 4 C 0.081 3.919 5 C -0.557 4.557 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.204 1.204 13 C -0.093 4.093 14 C 0.316 3.684 15 O -0.416 6.416 16 N -0.314 5.314 17 C -0.073 4.073 18 C 0.104 3.896 19 C -0.134 4.134 20 C -0.056 4.056 21 C -0.149 4.149 22 N 0.548 4.452 23 O -0.387 6.387 24 O -0.397 6.397 25 C -0.060 4.060 26 C -0.133 4.133 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.008 0.992 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.192 0.808 41 H 0.193 0.807 42 H 0.183 0.817 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.697 0.320 20.754 20.826 hybrid contribution -0.239 -0.372 -0.767 0.885 sum -1.936 -0.051 19.987 20.081 Atomic orbital electron populations 1.22285 0.97619 1.02397 1.01336 1.22027 0.93122 0.90138 1.01600 1.61904 1.60523 1.02709 1.01221 1.19477 0.93123 0.92618 0.86682 1.21439 1.25963 1.15342 0.92990 0.93158 1.25706 0.96127 0.95255 1.01899 1.70030 1.37573 1.23261 1.26091 0.85498 0.78478 0.78353 0.79281 1.19630 1.20304 1.20396 1.22066 0.99010 0.99685 0.88504 1.21074 0.81293 0.82544 0.83538 1.90694 1.37718 1.28663 1.84507 1.45702 1.40138 1.41037 1.04533 1.22317 0.90729 0.89484 1.04754 1.18211 0.90973 0.92826 0.87579 1.21506 0.93784 1.02730 0.95346 1.21144 0.97772 0.91887 0.94799 1.21313 1.02044 0.97206 0.94367 1.43861 0.99690 1.00390 1.01299 1.94516 1.30113 1.57837 1.56217 1.94536 1.72705 1.02888 1.69604 1.21034 0.91131 1.01032 0.92815 1.21387 1.00490 0.95672 0.95718 0.91878 0.93960 0.91072 0.93140 0.90521 0.99229 0.96985 0.92697 0.89787 0.87113 0.89729 0.89059 0.88406 0.80757 0.80734 0.81692 0.83276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.74 9.22 71.98 0.66 -5.07 16 2 C 0.06 2.27 5.55 86.30 0.48 2.75 16 3 N -0.54 -22.20 4.40 -905.38 -3.98 -26.18 16 4 C 0.21 10.16 4.55 85.56 0.39 10.55 16 5 C -0.52 -28.84 8.67 25.60 0.22 -28.62 16 6 H 0.05 2.87 7.27 -2.91 -0.02 2.85 16 7 C 0.01 0.46 5.46 84.65 0.46 0.93 16 8 N -0.93 -53.42 13.29 21.45 0.28 -53.13 16 9 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 13 C 0.04 1.13 3.95 85.56 0.34 1.47 16 14 C 0.53 14.44 7.24 87.66 0.63 15.07 16 15 O -0.54 -19.45 13.90 -3.05 -0.04 -19.49 16 16 N -0.58 -10.53 2.93 -654.56 -1.92 -12.45 16 17 C 0.07 0.63 10.10 127.77 1.29 1.92 16 18 C 0.20 3.45 4.82 38.15 0.18 3.63 16 19 C -0.11 -1.57 9.85 22.39 0.22 -1.35 16 20 C -0.04 -0.54 9.55 22.25 0.21 -0.33 16 21 C -0.07 -1.26 6.85 36.40 0.25 -1.01 16 22 N 0.03 0.77 4.45 -46.41 -0.21 0.57 16 23 O -0.17 -4.21 18.44 18.88 0.35 -3.86 16 24 O -0.19 -4.78 18.44 18.88 0.35 -4.44 16 25 C -0.04 -0.71 9.55 22.25 0.21 -0.50 16 26 C -0.11 -2.01 9.32 22.39 0.21 -1.80 16 27 H 0.06 1.72 6.15 -2.39 -0.01 1.71 16 28 H 0.04 1.60 6.48 -2.39 -0.02 1.58 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 2.20 7.13 -2.39 -0.02 2.18 16 31 H 0.08 2.83 5.82 -2.39 -0.01 2.82 16 32 H -0.01 -0.50 5.88 -2.39 -0.01 -0.51 16 33 H 0.01 0.63 7.83 -2.38 -0.02 0.61 16 34 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.08 2.08 5.16 -2.39 -0.01 2.07 16 36 H 0.11 3.04 7.87 -2.39 -0.02 3.02 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 0.81 6.48 -2.39 -0.02 0.79 16 39 H 0.10 0.52 8.05 -2.39 -0.02 0.50 16 40 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 41 H 0.18 1.93 7.60 -2.91 -0.02 1.91 16 42 H 0.17 2.50 7.60 -2.91 -0.02 2.48 16 43 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -71.91 361.42 3.66 -68.24 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.04 Total: 7.07 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 5.77 Total: -2.37 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -5.82 Total: -91.20 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: 0.65 Total: -27.79 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.91 3.66 -68.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.896 kcal (2) G-P(sol) polarization free energy of solvation -71.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds