Wall clock time and date at job start Tue Mar 31 2020 12:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.47199 * 2 1 4 4 C 1.46901 * 110.99957 * 302.21723 * 3 2 1 5 5 C 1.50707 * 109.47329 * 298.53784 * 4 3 2 6 6 H 1.07998 * 119.99721 * 2.40565 * 5 4 3 7 7 C 1.37875 * 119.99951 * 182.40881 * 5 4 3 8 8 N 1.31504 * 120.00306 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99731 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47315 * 59.99734 * 9 7 5 11 11 H 1.48494 * 109.47068 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47088 * 299.99734 * 9 7 5 13 13 C 1.46897 * 111.00188 * 66.16712 * 3 2 1 14 14 H 1.08997 * 109.47171 * 296.49888 * 13 3 2 15 15 C 1.53000 * 109.47555 * 176.49172 * 13 3 2 16 16 C 1.50704 * 109.46916 * 56.49294 * 13 3 2 17 17 O 1.21284 * 119.99733 * 28.40256 * 16 13 3 18 18 N 1.34769 * 120.00426 * 208.40710 * 16 13 3 19 19 C 1.39924 * 120.00400 * 185.11020 * 18 16 13 20 20 C 1.38874 * 120.07092 * 32.62234 * 19 18 16 21 21 C 1.38105 * 119.93040 * 180.02562 * 20 19 18 22 22 C 1.38291 * 120.07164 * 359.97438 * 21 20 19 23 23 N 1.48013 * 119.92641 * 180.02562 * 22 21 20 24 24 O 1.21802 * 120.00255 * 359.97438 * 23 22 21 25 25 O 1.21799 * 119.99789 * 179.72745 * 23 22 21 26 26 C 1.38279 * 120.13722 * 0.27801 * 22 21 20 27 27 C 1.38108 * 120.07308 * 359.45050 * 26 22 21 28 28 H 1.08998 * 109.46809 * 304.70438 * 1 2 3 29 29 H 1.09005 * 109.46904 * 64.70193 * 1 2 3 30 30 H 1.08998 * 109.46847 * 184.69667 * 1 2 3 31 31 H 1.09000 * 109.46870 * 239.99873 * 2 1 3 32 32 H 1.08994 * 109.47273 * 119.99851 * 2 1 3 33 33 H 1.09004 * 109.47405 * 58.53639 * 4 3 2 34 34 H 1.09005 * 109.47199 * 178.53901 * 4 3 2 35 35 H 0.97001 * 120.00587 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46953 * 60.00164 * 15 13 3 37 37 H 1.08999 * 109.47578 * 180.02562 * 15 13 3 38 38 H 1.09006 * 109.46909 * 300.00781 * 15 13 3 39 39 H 0.97007 * 119.99745 * 5.10883 * 18 16 13 40 40 H 1.08003 * 120.03032 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.96719 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.95886 * 179.72490 * 26 22 21 43 43 H 1.08006 * 120.03639 * 180.24891 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5059 2.1250 -1.1603 5 6 1.9923 1.4719 -2.4284 6 1 2.5880 0.5724 -2.3783 7 6 1.6768 2.0226 -3.6523 8 7 0.9510 3.1176 -3.7133 9 14 2.2803 1.2133 -5.2241 10 1 1.7468 -0.1702 -5.3050 11 1 1.8086 1.9944 -6.3956 12 1 3.7648 1.1721 -5.2212 13 6 1.6728 2.0660 1.2544 14 1 0.5886 2.1335 1.3434 15 6 2.2731 3.4734 1.2537 16 6 2.2247 1.2852 2.4193 17 8 3.2222 0.6098 2.2784 18 7 1.6098 1.3371 3.6174 19 6 2.1801 0.6996 4.7247 20 6 3.5611 0.6124 4.8426 21 6 4.1208 -0.0179 5.9365 22 6 3.3077 -0.5615 6.9142 23 7 3.9111 -1.2358 8.0856 24 8 5.1224 -1.3120 8.1874 25 8 3.1962 -1.7107 8.9499 26 6 1.9323 -0.4809 6.7972 27 6 1.3663 0.1531 5.7085 28 1 -0.3633 0.5851 0.8448 29 1 -0.3633 0.4392 -0.9292 30 1 -0.3633 -1.0242 0.0841 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.4160 2.1173 -1.1426 34 1 1.8627 3.1543 -1.1218 35 1 0.7287 3.5049 -4.5744 36 1 1.8739 4.0382 0.4113 37 1 2.0160 3.9786 2.1847 38 1 3.3574 3.4058 1.1647 39 1 0.7719 1.8166 3.7121 40 1 4.1966 1.0364 4.0792 41 1 5.1947 -0.0865 6.0286 42 1 1.2999 -0.9103 7.5602 43 1 0.2920 0.2192 5.6197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:32 Heat of formation + Delta-G solvation = 2.305129 kcal Electronic energy + Delta-G solvation = -26831.062357 eV Core-core repulsion = 22880.246200 eV Total energy + Delta-G solvation = -3950.816157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.33235 -41.05947 -39.23090 -37.12959 -36.71087 -35.22296 -32.83440 -32.00943 -31.76902 -30.83572 -28.79813 -26.68323 -26.48077 -24.24835 -23.75274 -23.09090 -22.40526 -20.96144 -19.58525 -19.46411 -18.74265 -18.01635 -17.67457 -17.25086 -16.43811 -15.84909 -15.37393 -15.32176 -15.05440 -14.68342 -14.34793 -14.14035 -13.86729 -13.73366 -13.41881 -13.15742 -12.51222 -12.38948 -12.11154 -12.05161 -11.90320 -11.72618 -11.48764 -11.37631 -11.30050 -11.18321 -11.07851 -10.97822 -10.84053 -10.69383 -10.13515 -10.09879 -9.79973 -9.55661 -9.27750 -8.90425 -8.52238 -7.39678 -6.13219 -4.13788 -0.39364 0.61882 1.07996 1.24546 2.36364 2.53704 3.03893 3.28005 3.32263 3.35864 4.03006 4.16557 4.31877 4.40331 4.48061 4.61580 4.65708 4.89898 5.14334 5.22121 5.25781 5.29991 5.32505 5.44388 5.59789 5.62965 5.72932 5.75509 5.83231 5.93968 6.06458 6.09352 6.22203 6.31560 6.41316 6.57133 6.77975 6.90340 7.14058 7.20990 7.48365 7.65172 7.82484 7.96372 8.03081 8.38547 8.92617 9.50548 10.97710 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029137 B = 0.002430 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.737157 B =11520.673571 C =11663.738391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 N -0.512 5.512 4 C 0.189 3.811 5 C -0.508 4.508 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.069 3.931 14 H 0.055 0.945 15 C -0.141 4.141 16 C 0.521 3.479 17 O -0.485 6.485 18 N -0.680 5.680 19 C 0.218 3.782 20 C -0.128 4.128 21 C -0.029 4.029 22 C -0.074 4.074 23 N 0.035 4.965 24 O -0.167 6.167 25 O -0.170 6.170 26 C -0.030 4.030 27 C -0.155 4.155 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.055 0.945 33 H -0.002 1.002 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.417 0.583 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -1.654 18.943 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.073 4.073 3 N -0.237 5.237 4 C 0.065 3.935 5 C -0.546 4.546 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.044 4.044 14 H 0.073 0.927 15 C -0.199 4.199 16 C 0.309 3.691 17 O -0.355 6.355 18 N -0.326 5.326 19 C 0.120 3.880 20 C -0.149 4.149 21 C -0.049 4.049 22 C -0.159 4.159 23 N 0.552 4.448 24 O -0.382 6.382 25 O -0.384 6.384 26 C -0.050 4.050 27 C -0.176 4.176 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.015 0.985 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.254 0.746 40 H 0.178 0.822 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.228 -1.656 17.976 18.094 hybrid contribution -1.019 -0.325 -0.516 1.188 sum -2.247 -1.981 17.460 17.715 Atomic orbital electron populations 1.22401 0.99260 1.00763 1.02200 1.22089 0.91947 0.90994 1.02259 1.62328 1.59421 1.01905 1.00044 1.19900 0.93505 0.94260 0.85821 1.21074 1.32766 1.11017 0.89755 0.91871 1.24939 0.95225 0.95019 0.99187 1.69921 1.38103 1.20260 1.25510 0.86566 0.79342 0.79263 0.82310 1.20286 1.21349 1.20092 1.21553 0.97958 0.94824 0.90047 0.92742 1.21828 1.02699 0.93056 1.02269 1.21410 0.83973 0.80810 0.82877 1.90718 1.24214 1.37821 1.82790 1.44085 1.27316 1.53542 1.07698 1.18210 0.92532 0.90451 0.86795 1.21290 0.93872 1.01495 0.98231 1.20947 1.01557 0.92128 0.90263 1.21055 0.94077 1.09647 0.91071 1.43580 1.00923 0.98599 1.01662 1.94541 0.96766 1.63132 1.83739 1.94520 1.60754 1.48595 1.34558 1.20782 0.91973 0.94577 0.97655 1.20912 1.00783 1.01149 0.94750 0.94378 0.90692 0.93357 0.89513 0.92672 0.98467 0.94276 0.92804 0.89744 0.92843 0.91094 0.74625 0.82187 0.82655 0.82703 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 9.16 37.16 0.34 -2.76 16 2 C 0.06 1.03 5.41 -3.82 -0.02 1.01 16 3 N -0.51 -10.08 4.35 -229.47 -1.00 -11.08 16 4 C 0.19 4.43 4.08 -4.97 -0.02 4.40 16 5 C -0.51 -13.39 8.56 -34.44 -0.29 -13.69 16 6 H 0.06 1.68 6.68 -52.49 -0.35 1.33 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.15 13.29 55.43 0.74 -24.41 16 9 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.07 1.03 2.12 -68.86 -0.15 0.88 16 14 H 0.06 0.74 6.54 -51.93 -0.34 0.40 16 15 C -0.14 -1.95 8.94 37.16 0.33 -1.62 16 16 C 0.52 7.06 5.62 -10.99 -0.06 7.00 16 17 O -0.49 -8.20 13.01 5.55 0.07 -8.12 16 18 N -0.68 -6.33 5.34 -9.86 -0.05 -6.39 16 19 C 0.22 2.04 6.29 -83.69 -0.53 1.51 16 20 C -0.13 -1.34 8.66 -39.39 -0.34 -1.68 16 21 C -0.03 -0.29 9.55 -39.61 -0.38 -0.67 16 22 C -0.07 -0.77 6.85 -79.91 -0.55 -1.32 16 23 N 0.04 0.44 4.45 33.98 0.15 0.59 16 24 O -0.17 -2.24 18.44 -29.46 -0.54 -2.78 16 25 O -0.17 -2.19 18.44 -29.46 -0.54 -2.73 16 26 C -0.03 -0.25 9.55 -39.61 -0.38 -0.62 16 27 C -0.15 -1.12 9.96 -39.39 -0.39 -1.51 16 28 H 0.04 0.55 6.42 -51.93 -0.33 0.21 16 29 H 0.07 1.44 6.61 -51.93 -0.34 1.10 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.79 6.58 -51.93 -0.34 1.45 16 32 H 0.05 0.99 5.99 -51.93 -0.31 0.68 16 33 H 0.00 -0.06 6.29 -51.93 -0.33 -0.38 16 34 H 0.04 0.97 6.02 -51.93 -0.31 0.66 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.08 1.31 6.28 -51.93 -0.33 0.98 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.42 2.52 8.82 -40.82 -0.36 2.16 16 40 H 0.16 1.86 6.36 -52.48 -0.33 1.53 16 41 H 0.16 1.38 7.60 -52.49 -0.40 0.98 16 42 H 0.16 1.00 7.60 -52.49 -0.40 0.60 16 43 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -31.16 356.99 -8.65 -39.82 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.30 Total: 1.42 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.53 Total: -7.60 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.16 Total: -41.28 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -1.01 Total: -13.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.16 -8.65 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.121 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds