Wall clock time and date at job start Tue Mar 31 2020 12:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46898 * 109.47199 * 2 1 4 4 C 1.46901 * 110.99957 * 302.21723 * 3 2 1 5 5 C 1.50707 * 109.47329 * 298.53784 * 4 3 2 6 6 H 1.07998 * 119.99721 * 2.40565 * 5 4 3 7 7 C 1.37875 * 119.99951 * 182.40881 * 5 4 3 8 8 N 1.31504 * 120.00306 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99731 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47315 * 59.99734 * 9 7 5 11 11 H 1.48494 * 109.47068 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47088 * 299.99734 * 9 7 5 13 13 C 1.46897 * 111.00188 * 66.16712 * 3 2 1 14 14 H 1.08997 * 109.47171 * 296.49888 * 13 3 2 15 15 C 1.53000 * 109.47555 * 176.49172 * 13 3 2 16 16 C 1.50704 * 109.46916 * 56.49294 * 13 3 2 17 17 O 1.21284 * 119.99733 * 28.40256 * 16 13 3 18 18 N 1.34769 * 120.00426 * 208.40710 * 16 13 3 19 19 C 1.39924 * 120.00400 * 185.11020 * 18 16 13 20 20 C 1.38874 * 120.07092 * 32.62234 * 19 18 16 21 21 C 1.38105 * 119.93040 * 180.02562 * 20 19 18 22 22 C 1.38291 * 120.07164 * 359.97438 * 21 20 19 23 23 N 1.48013 * 119.92641 * 180.02562 * 22 21 20 24 24 O 1.21802 * 120.00255 * 359.97438 * 23 22 21 25 25 O 1.21799 * 119.99789 * 179.72745 * 23 22 21 26 26 C 1.38279 * 120.13722 * 0.27801 * 22 21 20 27 27 C 1.38108 * 120.07308 * 359.45050 * 26 22 21 28 28 H 1.08998 * 109.46809 * 304.70438 * 1 2 3 29 29 H 1.09005 * 109.46904 * 64.70193 * 1 2 3 30 30 H 1.08998 * 109.46847 * 184.69667 * 1 2 3 31 31 H 1.09000 * 109.46870 * 239.99873 * 2 1 3 32 32 H 1.08994 * 109.47273 * 119.99851 * 2 1 3 33 33 H 1.09004 * 109.47405 * 58.53639 * 4 3 2 34 34 H 1.09005 * 109.47199 * 178.53901 * 4 3 2 35 35 H 0.97001 * 120.00587 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.46953 * 60.00164 * 15 13 3 37 37 H 1.08999 * 109.47578 * 180.02562 * 15 13 3 38 38 H 1.09006 * 109.46909 * 300.00781 * 15 13 3 39 39 H 0.97007 * 119.99745 * 5.10883 * 18 16 13 40 40 H 1.08003 * 120.03032 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.96719 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.95886 * 179.72490 * 26 22 21 43 43 H 1.08006 * 120.03639 * 180.24891 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5059 2.1250 -1.1603 5 6 1.9923 1.4719 -2.4284 6 1 2.5880 0.5724 -2.3783 7 6 1.6768 2.0226 -3.6523 8 7 0.9510 3.1176 -3.7133 9 14 2.2803 1.2133 -5.2241 10 1 1.7468 -0.1702 -5.3050 11 1 1.8086 1.9944 -6.3956 12 1 3.7648 1.1721 -5.2212 13 6 1.6728 2.0660 1.2544 14 1 0.5886 2.1335 1.3434 15 6 2.2731 3.4734 1.2537 16 6 2.2247 1.2852 2.4193 17 8 3.2222 0.6098 2.2784 18 7 1.6098 1.3371 3.6174 19 6 2.1801 0.6996 4.7247 20 6 3.5611 0.6124 4.8426 21 6 4.1208 -0.0179 5.9365 22 6 3.3077 -0.5615 6.9142 23 7 3.9111 -1.2358 8.0856 24 8 5.1224 -1.3120 8.1874 25 8 3.1962 -1.7107 8.9499 26 6 1.9323 -0.4809 6.7972 27 6 1.3663 0.1531 5.7085 28 1 -0.3633 0.5851 0.8448 29 1 -0.3633 0.4392 -0.9292 30 1 -0.3633 -1.0242 0.0841 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.4160 2.1173 -1.1426 34 1 1.8627 3.1543 -1.1218 35 1 0.7287 3.5049 -4.5744 36 1 1.8739 4.0382 0.4113 37 1 2.0160 3.9786 2.1847 38 1 3.3574 3.4058 1.1647 39 1 0.7719 1.8166 3.7121 40 1 4.1966 1.0364 4.0792 41 1 5.1947 -0.0865 6.0286 42 1 1.2999 -0.9103 7.5602 43 1 0.2920 0.2192 5.6197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:29 Heat of formation + Delta-G solvation = -17.555759 kcal Electronic energy + Delta-G solvation = -26831.923590 eV Core-core repulsion = 22880.246200 eV Total energy + Delta-G solvation = -3951.677390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.24010 -42.03571 -40.19896 -38.48515 -37.66397 -36.17216 -34.76835 -33.28860 -32.47418 -31.77183 -30.41338 -28.21681 -27.50951 -25.60735 -24.68174 -24.42742 -23.39733 -22.15079 -20.72179 -20.41607 -19.69471 -18.92483 -18.59732 -18.55375 -18.09855 -17.00745 -16.71396 -16.64444 -16.10160 -15.90038 -15.52573 -15.18618 -14.77371 -14.72256 -14.51856 -14.28355 -14.20958 -13.75427 -13.46084 -13.28891 -12.99958 -12.83912 -12.73519 -12.68406 -12.64769 -12.42839 -12.38265 -12.30942 -12.29716 -11.97445 -11.91029 -11.56066 -11.21830 -10.87048 -10.55353 -10.42503 -9.72040 -8.94006 -8.19198 -6.25477 -1.27071 -0.05813 0.19413 0.39885 1.33688 1.41011 1.42382 1.49891 1.64184 2.29288 2.41040 3.13288 3.23005 3.32358 3.48005 3.50623 3.78207 3.84487 4.03569 4.10004 4.21819 4.23224 4.40135 4.44930 4.56746 4.64841 4.65452 4.73421 4.83605 4.88220 4.92904 4.99270 5.04644 5.19597 5.22053 5.25275 5.39495 5.46225 5.50993 5.66787 6.03634 6.16037 6.31392 6.49795 6.62231 6.87416 6.93775 7.42677 8.91100 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029137 B = 0.002430 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.737157 B =11520.673571 C =11663.738391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 N -0.532 5.532 4 C 0.208 3.792 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.275 1.275 13 C 0.064 3.936 14 H 0.079 0.921 15 C -0.137 4.137 16 C 0.531 3.469 17 O -0.524 6.524 18 N -0.658 5.658 19 C 0.211 3.789 20 C -0.139 4.139 21 C -0.033 4.033 22 C -0.085 4.085 23 N 0.036 4.964 24 O -0.203 6.203 25 O -0.169 6.169 26 C -0.024 4.024 27 C -0.131 4.131 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.065 0.935 33 H -0.016 1.016 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.436 0.564 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.178 0.822 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 -1.961 20.399 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.069 4.069 3 N -0.257 5.257 4 C 0.082 3.918 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.568 5.568 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.200 1.200 13 C -0.048 4.048 14 H 0.096 0.904 15 C -0.194 4.194 16 C 0.319 3.681 17 O -0.397 6.397 18 N -0.305 5.305 19 C 0.113 3.887 20 C -0.160 4.160 21 C -0.053 4.053 22 C -0.170 4.170 23 N 0.549 4.451 24 O -0.410 6.410 25 O -0.386 6.386 26 C -0.043 4.043 27 C -0.152 4.152 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.002 0.998 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.277 0.723 40 H 0.162 0.838 41 H 0.174 0.826 42 H 0.196 0.804 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.158 -1.956 19.474 19.825 hybrid contribution -0.459 -0.219 -0.881 1.017 sum -3.618 -2.176 18.593 19.067 Atomic orbital electron populations 1.22268 0.97389 1.02313 1.01543 1.21986 0.93440 0.90236 1.01218 1.62100 1.60151 1.02380 1.01040 1.19490 0.92321 0.93403 0.86563 1.21396 1.32358 1.10760 0.91466 0.92899 1.25672 0.95457 0.95572 1.02106 1.70015 1.39197 1.21383 1.26167 0.85648 0.78719 0.78605 0.78921 1.19645 1.20771 1.20000 1.21646 0.99469 0.95040 0.88598 0.90389 1.21792 1.01310 0.92669 1.03645 1.20962 0.83408 0.80140 0.83625 1.90724 1.25871 1.39542 1.83574 1.43678 1.27492 1.53073 1.06299 1.18330 0.92292 0.90869 0.87163 1.21190 0.94684 1.02110 0.98006 1.20940 1.01847 0.92261 0.90273 1.21250 0.95131 1.10219 0.90391 1.43869 1.00761 0.98385 1.02075 1.94543 0.97429 1.64578 1.84462 1.94489 1.60536 1.48430 1.35097 1.21136 0.90991 0.93899 0.98298 1.21252 1.02397 0.98742 0.92793 0.91791 0.93912 0.91234 0.92550 0.91637 0.99800 0.96073 0.92745 0.91827 0.88544 0.92901 0.72269 0.83818 0.82634 0.80426 0.79176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.56 9.16 71.98 0.66 -4.90 16 2 C 0.06 2.19 5.41 86.31 0.47 2.66 16 3 N -0.53 -21.01 4.35 -879.90 -3.83 -24.84 16 4 C 0.21 9.93 4.08 85.56 0.35 10.27 16 5 C -0.52 -28.19 8.56 25.60 0.22 -27.97 16 6 H 0.05 2.91 6.68 -2.91 -0.02 2.89 16 7 C 0.01 0.57 5.46 84.66 0.46 1.04 16 8 N -0.93 -52.68 13.29 21.44 0.28 -52.39 16 9 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 C 0.06 1.83 2.12 44.17 0.09 1.93 16 14 H 0.08 1.88 6.54 -2.39 -0.02 1.87 16 15 C -0.14 -3.65 8.94 71.98 0.64 -3.01 16 16 C 0.53 13.29 5.62 87.66 0.49 13.78 16 17 O -0.52 -17.32 13.01 -3.04 -0.04 -17.36 16 18 N -0.66 -9.86 5.34 -303.51 -1.62 -11.48 16 19 C 0.21 3.26 6.29 38.15 0.24 3.50 16 20 C -0.14 -2.73 8.66 22.39 0.19 -2.54 16 21 C -0.03 -0.64 9.55 22.25 0.21 -0.43 16 22 C -0.09 -1.63 6.85 36.40 0.25 -1.38 16 23 N 0.04 0.87 4.45 -46.41 -0.21 0.67 16 24 O -0.20 -5.51 18.44 18.88 0.35 -5.16 16 25 O -0.17 -4.10 18.44 18.89 0.35 -3.75 16 26 C -0.02 -0.30 9.55 22.25 0.21 -0.09 16 27 C -0.13 -1.28 9.96 22.39 0.22 -1.06 16 28 H 0.06 1.65 6.42 -2.39 -0.02 1.63 16 29 H 0.04 1.63 6.61 -2.38 -0.02 1.61 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 2.39 6.58 -2.39 -0.02 2.37 16 32 H 0.07 2.29 5.99 -2.39 -0.01 2.27 16 33 H -0.02 -0.78 6.29 -2.38 -0.01 -0.79 16 34 H 0.02 1.09 6.02 -2.38 -0.01 1.07 16 35 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.06 1.98 6.28 -2.39 -0.01 1.96 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.44 3.10 8.82 -92.70 -0.82 2.28 16 40 H 0.14 3.36 6.36 -2.91 -0.02 3.34 16 41 H 0.16 2.86 7.60 -2.91 -0.02 2.84 16 42 H 0.18 1.50 7.60 -2.91 -0.02 1.47 16 43 H 0.19 0.37 8.06 -2.91 -0.02 0.35 16 Total: -1.00 -70.31 356.99 2.28 -68.03 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.25 Total: 9.12 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.72 Total: -8.21 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -5.37 Total: -88.04 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: 0.66 Total: -26.28 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -70.31 2.28 -68.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.475 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds