Wall clock time and date at job start Tue Mar 31 2020 12:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.46918 * 2 1 4 4 C 1.46908 * 110.99863 * 301.01043 * 3 2 1 5 5 C 1.50696 * 109.47347 * 288.96262 * 4 3 2 6 6 H 1.08001 * 120.00145 * 4.97162 * 5 4 3 7 7 C 1.37877 * 119.99937 * 184.97421 * 5 4 3 8 8 N 1.31512 * 120.00201 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99840 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47151 * 89.99864 * 9 7 5 11 11 H 1.48505 * 109.47411 * 210.00079 * 9 7 5 12 12 H 1.48497 * 109.47209 * 330.00119 * 9 7 5 13 13 C 1.46899 * 111.00272 * 64.96769 * 3 2 1 14 14 C 1.50696 * 109.47250 * 66.04295 * 13 3 2 15 15 O 1.21287 * 119.99641 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00293 * 180.02562 * 14 13 3 17 17 C 1.39920 * 119.99948 * 184.49379 * 16 14 13 18 18 C 1.38896 * 120.07249 * 325.27694 * 17 16 14 19 19 C 1.38090 * 119.92791 * 180.27601 * 18 17 16 20 20 C 1.38302 * 120.07208 * 359.97438 * 19 18 17 21 21 N 1.48022 * 119.92763 * 180.02562 * 20 19 18 22 22 O 1.21804 * 119.99782 * 180.02562 * 21 20 19 23 23 O 1.21799 * 120.00194 * 0.02562 * 21 20 19 24 24 C 1.38262 * 120.14083 * 0.03911 * 20 19 18 25 25 C 1.38131 * 120.07037 * 359.96017 * 24 20 19 26 26 C 1.50700 * 120.03192 * 180.02562 * 25 24 20 27 27 H 1.09004 * 109.47425 * 65.09240 * 1 2 3 28 28 H 1.08999 * 109.47136 * 185.08975 * 1 2 3 29 29 H 1.08998 * 109.47471 * 305.09040 * 1 2 3 30 30 H 1.08998 * 109.47344 * 240.00178 * 2 1 3 31 31 H 1.08996 * 109.47103 * 119.99609 * 2 1 3 32 32 H 1.09000 * 109.46563 * 48.96407 * 4 3 2 33 33 H 1.08998 * 109.46624 * 168.95749 * 4 3 2 34 34 H 0.96995 * 119.99944 * 179.97438 * 8 7 5 35 35 H 1.09007 * 109.46683 * 306.04616 * 13 3 2 36 36 H 1.09002 * 109.47209 * 186.04916 * 13 3 2 37 37 H 0.97001 * 119.99356 * 4.49075 * 16 14 13 38 38 H 1.07996 * 120.03428 * 0.28228 * 18 17 16 39 39 H 1.08000 * 119.96310 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.96128 * 179.97438 * 24 20 19 41 41 H 1.08998 * 109.47489 * 270.01594 * 26 25 24 42 42 H 1.08995 * 109.47636 * 30.02096 * 26 25 24 43 43 H 1.09007 * 109.47179 * 150.02068 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5289 2.1169 -1.1755 5 6 2.2228 1.6053 -2.4115 6 1 2.8948 0.7626 -2.3438 7 6 1.9998 2.2132 -3.6288 8 7 1.1811 3.2391 -3.7113 9 14 2.8605 1.5796 -5.1607 10 1 2.0199 0.5395 -5.8064 11 1 3.0740 2.7024 -6.1089 12 1 4.1719 0.9930 -4.7849 13 6 1.6480 2.0748 1.2426 14 6 2.3681 1.4400 2.4042 15 8 3.1175 0.5052 2.2155 16 7 2.1793 1.9109 3.6529 17 6 2.9179 1.3844 4.7182 18 6 3.2601 0.0383 4.7298 19 6 3.9842 -0.4795 5.7855 20 6 4.3691 0.3409 6.8303 21 7 5.1456 -0.2174 7.9601 22 8 5.4848 0.5039 8.8812 23 8 5.4455 -1.3978 7.9687 24 6 4.0297 1.6812 6.8219 25 6 3.3056 2.2052 5.7689 26 6 2.9367 3.6664 5.7604 27 1 -0.3634 0.4328 -0.9321 28 1 -0.3633 -1.0236 0.0912 29 1 -0.3634 0.5907 0.8408 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4537 1.9669 -1.2740 33 1 1.7379 3.1798 -1.0549 34 1 1.0245 3.6669 -4.5676 35 1 0.5716 1.9946 1.3946 36 1 1.9277 3.1260 1.1722 37 1 1.5315 2.6149 3.8128 38 1 2.9603 -0.6027 3.9139 39 1 4.2503 -1.5261 5.7952 40 1 4.3314 2.3191 7.6396 41 1 1.9730 3.8007 6.2516 42 1 3.6982 4.2366 6.2922 43 1 2.8718 4.0188 4.7309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:32 Heat of formation + Delta-G solvation = -0.638595 kcal Electronic energy + Delta-G solvation = -26580.594067 eV Core-core repulsion = 22629.650261 eV Total energy + Delta-G solvation = -3950.943807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.32655 -41.06586 -39.19267 -36.90816 -36.69768 -35.28149 -33.29058 -32.69153 -31.40164 -29.87280 -28.44433 -27.71863 -26.47228 -25.12082 -23.39828 -23.22768 -21.99765 -20.96334 -19.71855 -19.12562 -18.76689 -18.07418 -17.66031 -17.19880 -16.25669 -16.17062 -15.55894 -15.07152 -14.88286 -14.53190 -14.39279 -14.27058 -13.96908 -13.80932 -13.59586 -12.97194 -12.77642 -12.64714 -12.44103 -12.03090 -11.95343 -11.78198 -11.70084 -11.35036 -11.29107 -11.28504 -11.14273 -10.93306 -10.83916 -10.67077 -10.20670 -10.08327 -9.67659 -9.49194 -9.28571 -8.84304 -8.51326 -7.38783 -6.11393 -4.11810 -0.36752 0.62652 1.10938 1.26103 2.39427 2.57733 3.02252 3.27455 3.34111 3.39466 4.00132 4.14759 4.34065 4.37660 4.47178 4.61310 4.78985 4.82440 4.95477 5.07306 5.25313 5.25509 5.29498 5.41130 5.45594 5.49266 5.57489 5.67260 5.70775 5.80270 5.87288 5.99099 6.11887 6.28059 6.35996 6.53345 6.80319 6.93178 7.10716 7.22246 7.50302 7.68576 7.86985 7.98156 8.05363 8.39331 8.95356 9.52518 10.99414 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.002426 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.363074 B =11537.172667 C =11862.385196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 N -0.516 5.516 4 C 0.189 3.811 5 C -0.504 4.504 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.034 3.966 14 C 0.516 3.484 15 O -0.487 6.487 16 N -0.680 5.680 17 C 0.214 3.786 18 C -0.123 4.123 19 C -0.038 4.038 20 C -0.067 4.067 21 N 0.035 4.965 22 O -0.170 6.170 23 O -0.167 6.167 24 C -0.036 4.036 25 C -0.118 4.118 26 C -0.116 4.116 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.002 0.998 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.416 0.584 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 -0.159 20.231 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.074 4.074 3 N -0.240 5.240 4 C 0.065 3.935 5 C -0.542 4.542 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.097 4.097 14 C 0.304 3.696 15 O -0.358 6.358 16 N -0.326 5.326 17 C 0.116 3.884 18 C -0.144 4.144 19 C -0.057 4.057 20 C -0.152 4.152 21 N 0.552 4.448 22 O -0.384 6.384 23 O -0.382 6.382 24 C -0.055 4.055 25 C -0.122 4.122 26 C -0.173 4.173 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.019 0.981 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.253 0.747 38 H 0.182 0.818 39 H 0.173 0.827 40 H 0.172 0.828 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.669 -0.424 19.248 19.264 hybrid contribution -0.577 0.043 -0.468 0.745 sum -1.246 -0.380 18.779 18.824 Atomic orbital electron populations 1.22431 0.99619 1.00864 1.02007 1.22143 0.91536 0.90938 1.02797 1.62164 1.59539 1.02139 1.00207 1.19873 0.94205 0.93594 0.85834 1.21104 1.26315 1.15558 0.91240 0.91806 1.24958 0.95455 0.94998 0.99133 1.69936 1.36468 1.22099 1.25506 0.86492 0.80095 0.78340 0.82502 1.20715 1.21256 1.19716 1.22008 0.97589 0.99851 0.90287 1.21521 0.81824 0.83387 0.82852 1.90674 1.34960 1.26363 1.83775 1.43983 1.41214 1.41238 1.06207 1.18014 0.91317 0.91790 0.87244 1.21404 1.00018 0.94059 0.98874 1.20952 0.93590 1.01062 0.90143 1.21028 1.07350 0.95419 0.91380 1.43588 0.98958 1.00689 1.01531 1.94518 1.57284 1.58312 1.28332 1.94538 1.58799 0.99884 1.84933 1.20657 0.94306 0.92323 0.98245 1.19656 1.00892 0.96998 0.94659 1.20792 1.02796 0.89862 1.03804 0.91151 0.93211 0.94085 0.90013 0.91331 0.98083 0.95070 0.92890 0.91895 0.87808 0.74681 0.81820 0.82735 0.82799 0.90261 0.90247 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 9.22 37.16 0.34 -2.74 16 2 C 0.05 0.99 5.55 -3.82 -0.02 0.97 16 3 N -0.52 -10.19 4.40 -237.52 -1.05 -11.24 16 4 C 0.19 4.49 4.55 -4.97 -0.02 4.47 16 5 C -0.50 -13.53 8.67 -34.44 -0.30 -13.83 16 6 H 0.06 1.74 7.27 -52.49 -0.38 1.36 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 9 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.03 0.50 5.28 -4.98 -0.03 0.47 16 14 C 0.52 6.82 7.36 -10.99 -0.08 6.74 16 15 O -0.49 -8.08 11.75 5.55 0.07 -8.02 16 16 N -0.68 -6.21 4.75 -9.86 -0.05 -6.25 16 17 C 0.21 2.08 6.29 -83.70 -0.53 1.56 16 18 C -0.12 -1.32 8.71 -39.39 -0.34 -1.66 16 19 C -0.04 -0.39 9.55 -39.61 -0.38 -0.77 16 20 C -0.07 -0.73 6.85 -79.91 -0.55 -1.28 16 21 N 0.04 0.45 4.45 33.98 0.15 0.60 16 22 O -0.17 -2.24 18.44 -29.46 -0.54 -2.78 16 23 O -0.17 -2.27 18.44 -29.46 -0.54 -2.82 16 24 C -0.04 -0.31 9.20 -39.61 -0.36 -0.68 16 25 C -0.12 -0.95 5.90 -104.43 -0.62 -1.57 16 26 C -0.12 -0.60 9.47 36.01 0.34 -0.25 16 27 H 0.07 1.31 6.44 -51.93 -0.33 0.98 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.58 6.18 -51.93 -0.32 0.26 16 30 H 0.08 1.67 7.14 -51.93 -0.37 1.30 16 31 H 0.07 1.20 5.81 -51.93 -0.30 0.89 16 32 H 0.00 0.04 5.86 -51.93 -0.30 -0.27 16 33 H 0.03 0.79 7.83 -51.93 -0.41 0.38 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.06 0.80 6.08 -51.93 -0.32 0.49 16 36 H 0.10 1.39 7.87 -51.93 -0.41 0.98 16 37 H 0.42 2.40 7.85 -40.82 -0.32 2.08 16 38 H 0.16 1.93 6.19 -52.49 -0.32 1.61 16 39 H 0.16 1.43 7.60 -52.49 -0.40 1.03 16 40 H 0.15 1.11 7.60 -52.49 -0.40 0.71 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 43 H 0.08 0.38 7.18 -51.93 -0.37 0.01 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -31.90 358.02 -8.85 -40.75 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.36 Total: 0.17 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.64 Total: -7.16 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.20 Total: -41.68 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.02 Total: -13.62 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.90 -8.85 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.114 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds