Wall clock time and date at job start Tue Mar 31 2020 12:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.46918 * 2 1 4 4 C 1.46908 * 110.99863 * 301.01043 * 3 2 1 5 5 C 1.50696 * 109.47347 * 288.96262 * 4 3 2 6 6 H 1.08001 * 120.00145 * 4.97162 * 5 4 3 7 7 C 1.37877 * 119.99937 * 184.97421 * 5 4 3 8 8 N 1.31512 * 120.00201 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99840 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47151 * 89.99864 * 9 7 5 11 11 H 1.48505 * 109.47411 * 210.00079 * 9 7 5 12 12 H 1.48497 * 109.47209 * 330.00119 * 9 7 5 13 13 C 1.46899 * 111.00272 * 64.96769 * 3 2 1 14 14 C 1.50696 * 109.47250 * 66.04295 * 13 3 2 15 15 O 1.21287 * 119.99641 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00293 * 180.02562 * 14 13 3 17 17 C 1.39920 * 119.99948 * 184.49379 * 16 14 13 18 18 C 1.38896 * 120.07249 * 325.27694 * 17 16 14 19 19 C 1.38090 * 119.92791 * 180.27601 * 18 17 16 20 20 C 1.38302 * 120.07208 * 359.97438 * 19 18 17 21 21 N 1.48022 * 119.92763 * 180.02562 * 20 19 18 22 22 O 1.21804 * 119.99782 * 180.02562 * 21 20 19 23 23 O 1.21799 * 120.00194 * 0.02562 * 21 20 19 24 24 C 1.38262 * 120.14083 * 0.03911 * 20 19 18 25 25 C 1.38131 * 120.07037 * 359.96017 * 24 20 19 26 26 C 1.50700 * 120.03192 * 180.02562 * 25 24 20 27 27 H 1.09004 * 109.47425 * 65.09240 * 1 2 3 28 28 H 1.08999 * 109.47136 * 185.08975 * 1 2 3 29 29 H 1.08998 * 109.47471 * 305.09040 * 1 2 3 30 30 H 1.08998 * 109.47344 * 240.00178 * 2 1 3 31 31 H 1.08996 * 109.47103 * 119.99609 * 2 1 3 32 32 H 1.09000 * 109.46563 * 48.96407 * 4 3 2 33 33 H 1.08998 * 109.46624 * 168.95749 * 4 3 2 34 34 H 0.96995 * 119.99944 * 179.97438 * 8 7 5 35 35 H 1.09007 * 109.46683 * 306.04616 * 13 3 2 36 36 H 1.09002 * 109.47209 * 186.04916 * 13 3 2 37 37 H 0.97001 * 119.99356 * 4.49075 * 16 14 13 38 38 H 1.07996 * 120.03428 * 0.28228 * 18 17 16 39 39 H 1.08000 * 119.96310 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.96128 * 179.97438 * 24 20 19 41 41 H 1.08998 * 109.47489 * 270.01594 * 26 25 24 42 42 H 1.08995 * 109.47636 * 30.02096 * 26 25 24 43 43 H 1.09007 * 109.47179 * 150.02068 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5289 2.1169 -1.1755 5 6 2.2228 1.6053 -2.4115 6 1 2.8948 0.7626 -2.3438 7 6 1.9998 2.2132 -3.6288 8 7 1.1811 3.2391 -3.7113 9 14 2.8605 1.5796 -5.1607 10 1 2.0199 0.5395 -5.8064 11 1 3.0740 2.7024 -6.1089 12 1 4.1719 0.9930 -4.7849 13 6 1.6480 2.0748 1.2426 14 6 2.3681 1.4400 2.4042 15 8 3.1175 0.5052 2.2155 16 7 2.1793 1.9109 3.6529 17 6 2.9179 1.3844 4.7182 18 6 3.2601 0.0383 4.7298 19 6 3.9842 -0.4795 5.7855 20 6 4.3691 0.3409 6.8303 21 7 5.1456 -0.2174 7.9601 22 8 5.4848 0.5039 8.8812 23 8 5.4455 -1.3978 7.9687 24 6 4.0297 1.6812 6.8219 25 6 3.3056 2.2052 5.7689 26 6 2.9367 3.6664 5.7604 27 1 -0.3634 0.4328 -0.9321 28 1 -0.3633 -1.0236 0.0912 29 1 -0.3634 0.5907 0.8408 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4537 1.9669 -1.2740 33 1 1.7379 3.1798 -1.0549 34 1 1.0245 3.6669 -4.5676 35 1 0.5716 1.9946 1.3946 36 1 1.9277 3.1260 1.1722 37 1 1.5315 2.6149 3.8128 38 1 2.9603 -0.6027 3.9139 39 1 4.2503 -1.5261 5.7952 40 1 4.3314 2.3191 7.6396 41 1 1.9730 3.8007 6.2516 42 1 3.6982 4.2366 6.2922 43 1 2.8718 4.0188 4.7309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:28 Heat of formation + Delta-G solvation = -20.410834 kcal Electronic energy + Delta-G solvation = -26581.451456 eV Core-core repulsion = 22629.650261 eV Total energy + Delta-G solvation = -3951.801195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -43.26815 -41.99457 -40.19036 -38.31504 -37.68481 -36.22781 -34.71217 -33.97397 -32.34421 -31.19981 -30.02609 -28.31728 -27.71510 -26.41927 -25.00481 -24.21851 -22.86156 -22.08379 -21.07305 -19.99625 -19.71990 -18.95750 -18.61596 -18.45046 -18.07522 -17.26011 -16.64207 -16.55888 -16.17781 -15.67794 -15.46313 -15.37187 -14.86013 -14.67620 -14.46185 -14.38457 -14.17199 -13.47412 -13.36094 -13.14093 -13.08682 -12.96769 -12.80101 -12.72779 -12.66182 -12.59775 -12.51711 -12.31241 -12.30085 -11.96132 -11.88756 -11.50809 -11.38375 -10.82236 -10.58013 -10.23234 -9.65615 -8.92911 -8.19117 -6.26016 -1.28058 -0.09760 0.19237 0.37292 1.38001 1.40301 1.41658 1.52434 1.67544 2.24010 2.41379 3.13241 3.29802 3.34457 3.44038 3.55173 3.68567 3.83218 4.11463 4.19818 4.24270 4.25447 4.40113 4.51722 4.58293 4.60896 4.66100 4.73925 4.78671 4.89342 4.91748 5.00656 5.07177 5.17477 5.21960 5.24875 5.35102 5.48669 5.53166 5.68151 6.04508 6.17696 6.35264 6.48895 6.61639 6.87634 6.97650 7.42391 8.90741 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.002426 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.363074 B =11537.172667 C =11862.385196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 N -0.537 5.537 4 C 0.206 3.794 5 C -0.519 4.519 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.032 3.968 14 C 0.524 3.476 15 O -0.525 6.525 16 N -0.657 5.657 17 C 0.206 3.794 18 C -0.132 4.132 19 C -0.042 4.042 20 C -0.078 4.078 21 N 0.036 4.964 22 O -0.170 6.170 23 O -0.198 6.198 24 C -0.032 4.032 25 C -0.102 4.102 26 C -0.118 4.118 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.080 0.920 32 H -0.010 1.010 33 H 0.013 0.987 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.435 0.565 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.175 0.825 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 1.073 21.420 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.070 4.070 3 N -0.261 5.261 4 C 0.080 3.920 5 C -0.558 4.558 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.570 5.570 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.197 1.197 13 C -0.099 4.099 14 C 0.313 3.687 15 O -0.399 6.399 16 N -0.305 5.305 17 C 0.108 3.892 18 C -0.153 4.153 19 C -0.062 4.062 20 C -0.162 4.162 21 N 0.550 4.450 22 O -0.386 6.386 23 O -0.407 6.407 24 C -0.052 4.052 25 C -0.105 4.105 26 C -0.174 4.174 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.008 0.992 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.276 0.724 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.192 0.808 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.283 0.780 20.477 20.532 hybrid contribution -0.409 -0.278 -0.749 0.898 sum -1.692 0.502 19.728 19.807 Atomic orbital electron populations 1.22304 0.97773 1.02389 1.01364 1.22053 0.93010 0.90129 1.01800 1.61922 1.60398 1.02684 1.01102 1.19485 0.93110 0.92664 0.86728 1.21418 1.26179 1.15209 0.92994 0.93059 1.25701 0.96124 0.95241 1.01926 1.70023 1.37609 1.23077 1.26254 0.85560 0.78991 0.77978 0.79164 1.19984 1.20640 1.19724 1.22067 0.99263 1.00023 0.88507 1.21143 0.81105 0.82757 0.83673 1.90679 1.36667 1.28074 1.84507 1.43584 1.41115 1.41044 1.04731 1.18122 0.91645 0.91680 0.87736 1.21326 1.00583 0.94755 0.98618 1.20971 0.93722 1.01404 0.90126 1.21200 1.07814 0.96369 0.90863 1.43849 0.98839 1.00507 1.01854 1.94489 1.57194 1.58116 1.28843 1.94536 1.60123 1.00501 1.85503 1.20962 0.93718 0.91552 0.98948 1.19927 0.99160 0.98312 0.93112 1.20949 1.04438 0.87396 1.04644 0.94044 0.91165 0.91762 0.93088 0.90180 0.99214 0.96890 0.92722 0.89424 0.86590 0.72389 0.83090 0.82498 0.80782 0.87873 0.88985 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.63 9.22 71.98 0.66 -4.97 16 2 C 0.06 2.13 5.55 86.30 0.48 2.61 16 3 N -0.54 -21.15 4.40 -905.37 -3.98 -25.13 16 4 C 0.21 9.90 4.55 85.55 0.39 10.29 16 5 C -0.52 -28.46 8.67 25.60 0.22 -28.23 16 6 H 0.05 2.87 7.27 -2.91 -0.02 2.85 16 7 C 0.01 0.46 5.46 84.65 0.46 0.92 16 8 N -0.93 -53.08 13.29 21.45 0.28 -52.80 16 9 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 C 0.03 0.88 5.28 85.56 0.45 1.34 16 14 C 0.52 12.94 7.36 87.66 0.65 13.58 16 15 O -0.53 -17.11 11.75 -3.05 -0.04 -17.15 16 16 N -0.66 -10.19 4.75 -303.51 -1.44 -11.63 16 17 C 0.21 3.53 6.29 38.15 0.24 3.77 16 18 C -0.13 -2.73 8.71 22.39 0.19 -2.54 16 19 C -0.04 -0.86 9.55 22.25 0.21 -0.65 16 20 C -0.08 -1.61 6.85 36.40 0.25 -1.36 16 21 N 0.04 0.91 4.45 -46.41 -0.21 0.70 16 22 O -0.17 -4.30 18.44 18.88 0.35 -3.95 16 23 O -0.20 -5.50 18.44 18.89 0.35 -5.15 16 24 C -0.03 -0.49 9.20 22.25 0.20 -0.28 16 25 C -0.10 -1.31 5.90 -19.74 -0.12 -1.43 16 26 C -0.12 -0.70 9.47 71.24 0.67 -0.03 16 27 H 0.04 1.54 6.44 -2.39 -0.02 1.52 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.68 6.18 -2.39 -0.01 1.67 16 30 H 0.05 2.15 7.14 -2.39 -0.02 2.13 16 31 H 0.08 2.77 5.81 -2.39 -0.01 2.75 16 32 H -0.01 -0.48 5.86 -2.39 -0.01 -0.50 16 33 H 0.01 0.67 7.83 -2.39 -0.02 0.65 16 34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.09 1.98 6.08 -2.38 -0.01 1.97 16 36 H 0.12 2.88 7.87 -2.39 -0.02 2.86 16 37 H 0.43 3.37 7.85 -92.71 -0.73 2.64 16 38 H 0.15 3.57 6.19 -2.91 -0.02 3.55 16 39 H 0.16 2.99 7.60 -2.91 -0.02 2.97 16 40 H 0.17 1.93 7.60 -2.91 -0.02 1.91 16 41 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.09 0.40 8.09 -2.39 -0.02 0.38 16 43 H 0.08 0.46 7.18 -2.38 -0.02 0.45 16 Total: -1.00 -70.46 358.02 2.65 -67.81 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.34 Total: 8.58 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 4.97 Total: -6.98 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -5.35 Total: -88.86 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: 0.66 Total: -26.24 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.46 2.65 -67.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.399 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds