Wall clock time and date at job start Tue Mar 31 2020 12:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46897 * 109.47297 * 2 1 4 4 C 1.46892 * 111.00236 * 199.16575 * 3 2 1 5 5 C 1.50701 * 109.47368 * 66.04617 * 4 3 2 6 6 H 1.08003 * 119.99723 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00219 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99973 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47058 * 60.00432 * 9 7 5 11 11 H 1.48499 * 109.47022 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47596 * 300.00528 * 9 7 5 13 13 C 1.46901 * 110.99867 * 75.21007 * 3 2 1 14 14 C 1.52993 * 109.47250 * 199.10123 * 13 3 2 15 15 C 1.50704 * 109.47216 * 174.98838 * 14 13 3 16 16 O 1.21291 * 119.99865 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00221 * 179.97438 * 15 14 13 18 18 C 1.39921 * 120.00172 * 185.35545 * 17 15 14 19 19 C 1.38893 * 120.06962 * 34.95102 * 18 17 15 20 20 C 1.38100 * 119.92580 * 180.02562 * 19 18 17 21 21 C 1.38298 * 120.07221 * 359.74571 * 20 19 18 22 22 C 1.38272 * 120.14108 * 0.51107 * 21 20 19 23 23 C 1.38130 * 120.06761 * 359.48719 * 22 21 20 24 24 N 1.48012 * 120.03370 * 180.27599 * 23 22 21 25 25 O 1.21801 * 120.00037 * 355.07030 * 24 23 22 26 26 O 1.21803 * 119.99927 * 175.06568 * 24 23 22 27 27 H 1.09003 * 109.47064 * 184.97272 * 1 2 3 28 28 H 1.09000 * 109.46657 * 304.96025 * 1 2 3 29 29 H 1.08997 * 109.47337 * 64.96810 * 1 2 3 30 30 H 1.09007 * 109.46723 * 240.00017 * 2 1 3 31 31 H 1.08997 * 109.47252 * 120.00865 * 2 1 3 32 32 H 1.09001 * 109.47182 * 186.04867 * 4 3 2 33 33 H 1.08999 * 109.47065 * 306.04727 * 4 3 2 34 34 H 0.97004 * 120.00199 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46919 * 79.09248 * 13 3 2 36 36 H 1.09004 * 109.46787 * 319.10209 * 13 3 2 37 37 H 1.08992 * 109.47360 * 54.98602 * 14 13 3 38 38 H 1.09003 * 109.46935 * 294.98407 * 14 13 3 39 39 H 0.97005 * 120.00051 * 5.34864 * 17 15 14 40 40 H 1.07996 * 120.03444 * 0.02562 * 19 18 17 41 41 H 1.07998 * 119.96250 * 180.02562 * 20 19 18 42 42 H 1.08001 * 119.93348 * 180.27869 * 21 20 19 43 43 H 1.07993 * 119.96343 * 179.76745 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4165 1.4495 -0.4502 5 6 3.4969 1.0409 -1.8985 6 1 2.5999 0.7616 -2.4314 7 6 4.7153 1.0245 -2.5437 8 7 5.8074 1.3651 -1.8950 9 14 4.8150 0.5173 -4.3387 10 1 3.9867 1.4368 -5.1596 11 1 6.2270 0.5827 -4.7938 12 1 4.3106 -0.8711 -4.4896 13 6 1.8652 1.9980 1.3260 14 6 1.9230 3.5211 1.1936 15 6 1.6420 4.1527 2.5328 16 8 1.4172 3.4534 3.4979 17 7 1.6406 5.4946 2.6579 18 6 1.4913 6.0795 3.9202 19 6 2.0410 5.4682 5.0398 20 6 1.8914 6.0477 6.2843 21 6 1.1997 7.2381 6.4159 22 6 0.6468 7.8463 5.3041 23 6 0.7929 7.2718 4.0564 24 7 0.2059 7.9268 2.8659 25 8 -0.4818 8.9235 2.9962 26 8 0.4107 7.4689 1.7559 27 1 -0.3633 -1.0238 0.0891 28 1 -0.3632 0.5889 0.8422 29 1 -0.3634 0.4348 -0.9311 30 1 1.8934 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.7874 2.4684 -0.3390 33 1 4.0240 0.7740 0.1521 34 1 6.6647 1.3533 -2.3487 35 1 2.6695 1.6591 1.9789 36 1 0.9048 1.7064 1.7513 37 1 1.1760 3.8517 0.4721 38 1 2.9145 3.8187 0.8524 39 1 1.7432 6.0551 1.8728 40 1 2.5848 4.5408 4.9371 41 1 2.3189 5.5732 7.1552 42 1 1.0880 7.6916 7.3897 43 1 0.1040 8.7739 5.4106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:24 Heat of formation + Delta-G solvation = -5.555047 kcal Electronic energy + Delta-G solvation = -26656.415051 eV Core-core repulsion = 22705.258051 eV Total energy + Delta-G solvation = -3951.157000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.53007 -40.78241 -39.06525 -37.07868 -36.83756 -35.10138 -32.73066 -32.29310 -31.91493 -30.38448 -29.31138 -26.85209 -26.34927 -24.24362 -23.08953 -22.57566 -22.37788 -20.59357 -19.63229 -19.47068 -18.90016 -17.97591 -17.77647 -17.25765 -16.46324 -15.95972 -15.78179 -15.30021 -14.86542 -14.71479 -14.46876 -14.10130 -13.80352 -13.60107 -13.15847 -12.97585 -12.77719 -12.36238 -12.28946 -12.09983 -11.79033 -11.47841 -11.43824 -11.37602 -11.21917 -10.97050 -10.90089 -10.87979 -10.72833 -10.44222 -10.16747 -10.07696 -9.89951 -9.73188 -9.21185 -8.85345 -8.45672 -7.29576 -6.05466 -4.06587 -0.44136 0.54956 1.05954 1.13791 2.35460 2.59693 3.00007 3.32474 3.36666 3.39714 3.92798 4.21527 4.33650 4.42552 4.47552 4.61522 4.72662 5.02984 5.13025 5.30038 5.34808 5.37965 5.45991 5.54327 5.67928 5.74868 5.79435 5.96571 6.01394 6.05364 6.10940 6.21121 6.26283 6.28060 6.49849 6.71527 6.80512 7.01552 7.23630 7.33384 7.40121 7.77692 7.83648 8.05388 8.17865 8.51833 9.01190 9.57861 11.05320 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.002718 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.485516 B =10299.331255 C =10700.761841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 N -0.539 5.539 4 C 0.191 3.809 5 C -0.508 4.508 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.071 3.929 14 C -0.132 4.132 15 C 0.523 3.477 16 O -0.518 6.518 17 N -0.674 5.674 18 C 0.234 3.766 19 C -0.129 4.129 20 C -0.044 4.044 21 C -0.141 4.141 22 C -0.038 4.038 23 C -0.084 4.084 24 N 0.040 4.960 25 O -0.156 6.156 26 O -0.176 6.176 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.018 0.982 32 H 0.030 0.970 33 H -0.010 1.010 34 H 0.262 0.738 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.429 0.571 40 H 0.158 0.842 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.405 11.445 17.077 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 N -0.263 5.263 4 C 0.066 3.934 5 C -0.547 4.547 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.058 4.058 14 C -0.172 4.172 15 C 0.313 3.687 16 O -0.393 6.393 17 N -0.326 5.326 18 C 0.134 3.866 19 C -0.150 4.150 20 C -0.063 4.063 21 C -0.161 4.161 22 C -0.057 4.057 23 C -0.171 4.171 24 N 0.555 4.445 25 O -0.373 6.373 26 O -0.384 6.384 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.274 0.726 40 H 0.175 0.825 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.334 10.825 17.789 22.429 hybrid contribution 0.608 -0.140 -1.073 1.241 sum -7.726 10.685 16.716 21.290 Atomic orbital electron populations 1.21805 0.96618 1.00034 1.01729 1.21944 0.94174 0.89951 1.00974 1.62051 1.25052 1.17095 1.22139 1.19776 0.81380 0.96768 0.95499 1.21132 0.93231 1.44739 0.95569 0.91817 1.24981 0.95663 0.95546 0.98356 1.69941 0.98485 1.48682 1.36767 0.86570 0.76848 0.79132 0.84925 1.20104 1.21409 1.20299 1.21715 1.01000 0.91304 0.91800 1.21703 1.05619 0.97791 0.92072 1.21510 0.74162 0.80474 0.92523 1.90695 1.46067 1.61581 1.40915 1.44492 1.71264 1.08845 1.08024 1.17618 0.91195 0.89691 0.88119 1.21364 1.00862 1.02219 0.90583 1.21543 0.93662 0.93564 0.97527 1.21171 0.99974 0.96369 0.98587 1.20915 0.95896 0.99948 0.88985 1.21013 1.09588 0.99711 0.86754 1.43461 0.98906 0.99947 1.02141 1.94530 1.35467 1.14531 1.92807 1.94398 1.65102 1.67049 1.11866 0.93488 0.93566 0.92323 0.89487 0.96346 0.95152 0.99172 0.92873 0.94968 0.91221 0.87158 0.87483 0.72636 0.82471 0.83616 0.83516 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.07 37.16 0.37 -1.92 16 2 C 0.06 1.11 5.51 -3.82 -0.02 1.09 16 3 N -0.54 -11.18 4.36 -236.07 -1.03 -12.21 16 4 C 0.19 4.77 4.55 -4.98 -0.02 4.75 16 5 C -0.51 -13.84 8.24 -34.44 -0.28 -14.12 16 6 H 0.06 1.72 7.30 -52.48 -0.38 1.34 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 9 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.07 1.27 4.16 -3.83 -0.02 1.25 16 14 C -0.13 -2.01 5.73 -27.88 -0.16 -2.17 16 15 C 0.52 7.47 7.56 -10.98 -0.08 7.39 16 16 O -0.52 -8.41 13.72 5.55 0.08 -8.34 16 17 N -0.67 -8.37 4.69 -9.86 -0.05 -8.42 16 18 C 0.23 2.71 6.24 -83.69 -0.52 2.18 16 19 C -0.13 -1.30 8.65 -39.39 -0.34 -1.64 16 20 C -0.04 -0.30 10.04 -39.61 -0.40 -0.70 16 21 C -0.14 -0.83 10.04 -39.55 -0.40 -1.23 16 22 C -0.04 -0.30 9.55 -39.61 -0.38 -0.68 16 23 C -0.08 -0.92 6.86 -79.76 -0.55 -1.46 16 24 N 0.04 0.52 4.45 34.05 0.15 0.67 16 25 O -0.16 -2.04 18.46 -29.46 -0.54 -2.58 16 26 O -0.18 -2.42 15.95 -29.46 -0.47 -2.89 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.70 6.62 -51.93 -0.34 0.36 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.84 6.58 -51.92 -0.34 1.50 16 31 H 0.02 0.35 8.01 -51.93 -0.42 -0.07 16 32 H 0.03 0.79 6.68 -51.93 -0.35 0.44 16 33 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.03 0.61 8.01 -51.93 -0.42 0.19 16 36 H 0.07 1.20 6.23 -51.93 -0.32 0.87 16 37 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.11 1.67 6.92 -51.93 -0.36 1.31 16 39 H 0.43 4.98 6.26 -40.82 -0.26 4.72 16 40 H 0.16 1.73 6.54 -52.49 -0.34 1.39 16 41 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 43 H 0.16 0.94 7.62 -52.49 -0.40 0.54 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -31.72 362.17 -9.18 -40.90 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.60 Total: 2.31 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.89 Total: -5.80 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.19 Total: -45.33 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.94 Total: -13.81 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.72 -9.18 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.349 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds