Wall clock time and date at job start Tue Mar 31 2020 12:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46897 * 109.47297 * 2 1 4 4 C 1.46892 * 111.00236 * 199.16575 * 3 2 1 5 5 C 1.50701 * 109.47368 * 66.04617 * 4 3 2 6 6 H 1.08003 * 119.99723 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00219 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99973 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47058 * 60.00432 * 9 7 5 11 11 H 1.48499 * 109.47022 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47596 * 300.00528 * 9 7 5 13 13 C 1.46901 * 110.99867 * 75.21007 * 3 2 1 14 14 C 1.52993 * 109.47250 * 199.10123 * 13 3 2 15 15 C 1.50704 * 109.47216 * 174.98838 * 14 13 3 16 16 O 1.21291 * 119.99865 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00221 * 179.97438 * 15 14 13 18 18 C 1.39921 * 120.00172 * 185.35545 * 17 15 14 19 19 C 1.38893 * 120.06962 * 34.95102 * 18 17 15 20 20 C 1.38100 * 119.92580 * 180.02562 * 19 18 17 21 21 C 1.38298 * 120.07221 * 359.74571 * 20 19 18 22 22 C 1.38272 * 120.14108 * 0.51107 * 21 20 19 23 23 C 1.38130 * 120.06761 * 359.48719 * 22 21 20 24 24 N 1.48012 * 120.03370 * 180.27599 * 23 22 21 25 25 O 1.21801 * 120.00037 * 355.07030 * 24 23 22 26 26 O 1.21803 * 119.99927 * 175.06568 * 24 23 22 27 27 H 1.09003 * 109.47064 * 184.97272 * 1 2 3 28 28 H 1.09000 * 109.46657 * 304.96025 * 1 2 3 29 29 H 1.08997 * 109.47337 * 64.96810 * 1 2 3 30 30 H 1.09007 * 109.46723 * 240.00017 * 2 1 3 31 31 H 1.08997 * 109.47252 * 120.00865 * 2 1 3 32 32 H 1.09001 * 109.47182 * 186.04867 * 4 3 2 33 33 H 1.08999 * 109.47065 * 306.04727 * 4 3 2 34 34 H 0.97004 * 120.00199 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46919 * 79.09248 * 13 3 2 36 36 H 1.09004 * 109.46787 * 319.10209 * 13 3 2 37 37 H 1.08992 * 109.47360 * 54.98602 * 14 13 3 38 38 H 1.09003 * 109.46935 * 294.98407 * 14 13 3 39 39 H 0.97005 * 120.00051 * 5.34864 * 17 15 14 40 40 H 1.07996 * 120.03444 * 0.02562 * 19 18 17 41 41 H 1.07998 * 119.96250 * 180.02562 * 20 19 18 42 42 H 1.08001 * 119.93348 * 180.27869 * 21 20 19 43 43 H 1.07993 * 119.96343 * 179.76745 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4165 1.4495 -0.4502 5 6 3.4969 1.0409 -1.8985 6 1 2.5999 0.7616 -2.4314 7 6 4.7153 1.0245 -2.5437 8 7 5.8074 1.3651 -1.8950 9 14 4.8150 0.5173 -4.3387 10 1 3.9867 1.4368 -5.1596 11 1 6.2270 0.5827 -4.7938 12 1 4.3106 -0.8711 -4.4896 13 6 1.8652 1.9980 1.3260 14 6 1.9230 3.5211 1.1936 15 6 1.6420 4.1527 2.5328 16 8 1.4172 3.4534 3.4979 17 7 1.6406 5.4946 2.6579 18 6 1.4913 6.0795 3.9202 19 6 2.0410 5.4682 5.0398 20 6 1.8914 6.0477 6.2843 21 6 1.1997 7.2381 6.4159 22 6 0.6468 7.8463 5.3041 23 6 0.7929 7.2718 4.0564 24 7 0.2059 7.9268 2.8659 25 8 -0.4818 8.9235 2.9962 26 8 0.4107 7.4689 1.7559 27 1 -0.3633 -1.0238 0.0891 28 1 -0.3632 0.5889 0.8422 29 1 -0.3634 0.4348 -0.9311 30 1 1.8934 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.7874 2.4684 -0.3390 33 1 4.0240 0.7740 0.1521 34 1 6.6647 1.3533 -2.3487 35 1 2.6695 1.6591 1.9789 36 1 0.9048 1.7064 1.7513 37 1 1.1760 3.8517 0.4721 38 1 2.9145 3.8187 0.8524 39 1 1.7432 6.0551 1.8728 40 1 2.5848 4.5408 4.9371 41 1 2.3189 5.5732 7.1552 42 1 1.0880 7.6916 7.3897 43 1 0.1040 8.7739 5.4106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:19 Heat of formation + Delta-G solvation = -25.040151 kcal Electronic energy + Delta-G solvation = -26657.259988 eV Core-core repulsion = 22705.258051 eV Total energy + Delta-G solvation = -3952.001937 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -43.44815 -41.77815 -39.96106 -38.63895 -37.86285 -36.05935 -34.79903 -33.21793 -33.02432 -31.48569 -30.76909 -28.35928 -27.49643 -25.42867 -24.36419 -23.98459 -23.43793 -21.75000 -21.17072 -20.34314 -19.84885 -18.82232 -18.69735 -18.63632 -18.25150 -17.16237 -16.76251 -16.41646 -16.24940 -15.81295 -15.71787 -15.56669 -15.13981 -14.65264 -14.45363 -14.24238 -14.01777 -13.88504 -13.56103 -13.06507 -12.91372 -12.79615 -12.77848 -12.65168 -12.55519 -12.41173 -12.38625 -12.33986 -12.22465 -11.82427 -11.77023 -11.48818 -11.25520 -11.15937 -10.65022 -10.58208 -9.66171 -9.05760 -8.18892 -6.27807 -1.29700 -0.13565 0.23012 0.29206 1.27750 1.42960 1.45382 1.53110 1.63084 2.31153 2.41840 3.13022 3.17664 3.18546 3.57950 3.64528 3.85854 3.93928 3.96537 4.03906 4.16473 4.27318 4.47318 4.57174 4.57954 4.66938 4.73612 4.78241 4.85702 4.92202 5.01818 5.09420 5.12990 5.14300 5.15837 5.18982 5.33694 5.45539 5.52515 5.67818 6.00085 6.07489 6.34425 6.40213 6.60521 6.75525 6.88027 7.41528 8.91940 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.002718 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.485516 B =10299.331255 C =10700.761841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.540 5.540 4 C 0.206 3.794 5 C -0.522 4.522 6 H 0.063 0.937 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.076 3.924 14 C -0.126 4.126 15 C 0.531 3.469 16 O -0.541 6.541 17 N -0.670 5.670 18 C 0.204 3.796 19 C -0.146 4.146 20 C -0.029 4.029 21 C -0.119 4.119 22 C -0.036 4.036 23 C -0.097 4.097 24 N 0.040 4.960 25 O -0.156 6.156 26 O -0.213 6.213 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.015 0.985 33 H -0.043 1.043 34 H 0.264 0.736 35 H 0.017 0.983 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.430 0.570 40 H 0.142 0.858 41 H 0.181 0.819 42 H 0.193 0.807 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 12.272 18.830 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 N -0.264 5.264 4 C 0.080 3.920 5 C -0.560 4.560 6 H 0.082 0.918 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.790 3.210 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.194 1.194 13 C -0.053 4.053 14 C -0.166 4.166 15 C 0.321 3.679 16 O -0.417 6.417 17 N -0.322 5.322 18 C 0.105 3.895 19 C -0.167 4.167 20 C -0.047 4.047 21 C -0.138 4.138 22 C -0.056 4.056 23 C -0.184 4.184 24 N 0.551 4.449 25 O -0.376 6.376 26 O -0.413 6.413 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.033 0.967 33 H -0.025 1.025 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.100 0.900 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.275 0.725 40 H 0.160 0.840 41 H 0.199 0.801 42 H 0.210 0.790 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.565 11.652 19.509 24.655 hybrid contribution 0.976 -0.331 -1.389 1.730 sum -8.588 11.321 18.120 23.027 Atomic orbital electron populations 1.21703 0.93450 1.01861 1.01947 1.22015 0.96697 0.88822 0.99897 1.62049 1.22101 1.18334 1.23939 1.19445 0.83328 0.94818 0.94440 1.21435 0.93387 1.44618 0.96553 0.91834 1.25854 0.95251 0.95440 1.02894 1.70069 0.99030 1.49705 1.38630 0.85494 0.76974 0.79086 0.79427 1.19271 1.21035 1.19413 1.21702 1.00894 0.92729 0.89956 1.21551 1.05509 0.96218 0.93284 1.21107 0.74069 0.81127 0.91569 1.90676 1.47549 1.62234 1.41258 1.44278 1.70889 1.08028 1.08973 1.17856 0.93086 0.90666 0.87887 1.21433 1.01443 1.02158 0.91676 1.22002 0.92221 0.93432 0.97059 1.21713 0.97263 0.95191 0.99628 1.21375 0.95546 1.00548 0.88087 1.21247 1.10507 0.99830 0.86855 1.43775 0.98671 0.99825 1.02626 1.94493 1.35403 1.14760 1.92899 1.94393 1.66305 1.67672 1.12960 0.90969 0.92750 0.92527 0.91702 0.96318 0.96656 1.02501 0.92755 0.96485 0.90018 0.86301 0.88327 0.72509 0.84033 0.80133 0.78999 0.80680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 10.07 71.98 0.72 -3.30 16 2 C 0.05 2.09 5.51 86.31 0.48 2.57 16 3 N -0.54 -23.04 4.36 -900.80 -3.93 -26.97 16 4 C 0.21 10.76 4.55 85.56 0.39 11.15 16 5 C -0.52 -29.10 8.24 25.60 0.21 -28.89 16 6 H 0.06 3.48 7.30 -2.91 -0.02 3.46 16 7 C 0.00 0.21 5.46 84.66 0.46 0.67 16 8 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 9 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 C 0.08 2.79 4.16 86.30 0.36 3.15 16 14 C -0.13 -4.00 5.73 29.85 0.17 -3.83 16 15 C 0.53 15.77 7.56 87.66 0.66 16.43 16 16 O -0.54 -17.98 13.72 -3.06 -0.04 -18.02 16 17 N -0.67 -17.36 4.69 -303.50 -1.42 -18.78 16 18 C 0.20 4.70 6.24 38.15 0.24 4.94 16 19 C -0.15 -2.80 8.65 22.39 0.19 -2.61 16 20 C -0.03 -0.29 10.04 22.25 0.22 -0.06 16 21 C -0.12 -0.85 10.04 22.29 0.22 -0.62 16 22 C -0.04 -0.46 9.55 22.25 0.21 -0.25 16 23 C -0.10 -2.05 6.86 36.50 0.25 -1.79 16 24 N 0.04 1.04 4.45 -46.17 -0.21 0.83 16 25 O -0.16 -3.98 18.46 18.88 0.35 -3.63 16 26 O -0.21 -6.10 15.95 18.88 0.30 -5.80 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.57 6.62 -2.39 -0.02 1.55 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 2.80 6.58 -2.38 -0.02 2.78 16 31 H 0.02 0.72 8.01 -2.39 -0.02 0.70 16 32 H 0.02 0.84 6.68 -2.39 -0.02 0.82 16 33 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 34 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.02 0.67 8.01 -2.39 -0.02 0.65 16 36 H 0.08 2.81 6.23 -2.38 -0.01 2.80 16 37 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 38 H 0.10 3.30 6.92 -2.39 -0.02 3.28 16 39 H 0.43 10.68 6.26 -92.70 -0.58 10.10 16 40 H 0.14 3.16 6.54 -2.91 -0.02 3.14 16 41 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 42 H 0.19 -0.26 8.06 -2.91 -0.02 -0.28 16 43 H 0.18 1.50 7.62 -2.91 -0.02 1.48 16 Total: -1.00 -71.29 362.17 2.62 -68.67 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.47 Total: 15.46 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 4.80 Total: -2.45 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -5.28 Total: -100.20 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: 0.61 Total: -27.45 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.29 2.62 -68.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.630 kcal (2) G-P(sol) polarization free energy of solvation -71.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds