Wall clock time and date at job start Tue Mar 31 2020 12:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46825 * 2 1 4 4 C 1.46893 * 111.00392 * 302.05672 * 3 2 1 5 5 C 1.50703 * 109.47008 * 291.15543 * 4 3 2 6 6 H 1.07996 * 119.99989 * 3.42638 * 5 4 3 7 7 C 1.37874 * 119.99920 * 183.42671 * 5 4 3 8 8 N 1.31514 * 120.00048 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00025 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47254 * 60.00213 * 9 7 5 11 11 H 1.48499 * 109.47398 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47295 * 300.00201 * 9 7 5 13 13 C 1.46902 * 110.99390 * 66.00945 * 3 2 1 14 14 C 1.50702 * 109.47485 * 66.04478 * 13 3 2 15 15 O 1.21288 * 119.99659 * 359.72497 * 14 13 3 16 16 N 1.34777 * 120.00202 * 179.97438 * 14 13 3 17 17 C 1.39929 * 119.99820 * 176.01935 * 16 14 13 18 18 C 1.38896 * 120.06647 * 305.69216 * 17 16 14 19 19 C 1.50692 * 120.03895 * 0.02562 * 18 17 16 20 20 C 1.38093 * 119.92498 * 179.74849 * 18 17 16 21 21 C 1.38308 * 120.07081 * 0.53204 * 20 18 17 22 22 C 1.38262 * 120.13814 * 359.74376 * 21 20 18 23 23 C 1.38132 * 120.07419 * 359.97438 * 22 21 20 24 24 N 1.48013 * 120.03659 * 180.02562 * 23 22 21 25 25 O 1.21796 * 120.00059 * 5.28804 * 24 23 22 26 26 O 1.21795 * 119.99917 * 185.28000 * 24 23 22 27 27 H 1.08996 * 109.47565 * 64.99202 * 1 2 3 28 28 H 1.09005 * 109.46912 * 184.98727 * 1 2 3 29 29 H 1.08996 * 109.47069 * 304.98629 * 1 2 3 30 30 H 1.09002 * 109.47061 * 240.00772 * 2 1 3 31 31 H 1.08996 * 109.47396 * 120.00868 * 2 1 3 32 32 H 1.09002 * 109.47204 * 51.15723 * 4 3 2 33 33 H 1.08997 * 109.47273 * 171.15490 * 4 3 2 34 34 H 0.97006 * 120.00299 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47168 * 306.04392 * 13 3 2 36 36 H 1.09004 * 109.47075 * 186.04182 * 13 3 2 37 37 H 0.96996 * 119.99991 * 356.01669 * 16 14 13 38 38 H 1.08998 * 109.47485 * 96.87249 * 19 18 17 39 39 H 1.09001 * 109.47725 * 216.88213 * 19 18 17 40 40 H 1.09010 * 109.47326 * 336.87743 * 19 18 17 41 41 H 1.07997 * 119.96576 * 180.24850 * 20 18 17 42 42 H 1.07994 * 119.93167 * 179.72063 * 21 20 18 43 43 H 1.08006 * 119.95969 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5089 2.1240 -1.1622 5 6 2.1415 1.5836 -2.4187 6 1 2.8094 0.7366 -2.3658 7 6 1.8677 2.1706 -3.6359 8 7 1.0548 3.2024 -3.7003 9 14 2.6524 1.5012 -5.1932 10 1 2.2508 0.0838 -5.3801 11 1 2.2002 2.3021 -6.3591 12 1 4.1306 1.5858 -5.0786 13 6 1.6693 2.0671 1.2530 14 6 2.4092 1.4252 2.3983 15 8 3.1511 0.4882 2.1918 16 7 2.2425 1.8891 3.6527 17 6 2.8638 1.2416 4.7264 18 6 2.6693 -0.1193 4.9251 19 6 1.7893 -0.9008 3.9841 20 6 3.2880 -0.7564 5.9825 21 6 4.0917 -0.0388 6.8497 22 6 4.2826 1.3171 6.6579 23 6 3.6712 1.9592 5.5987 24 7 3.8766 3.4106 5.3938 25 8 4.6595 4.0205 6.0998 26 8 3.2628 3.9950 4.5191 27 1 -0.3634 0.4344 -0.9313 28 1 -0.3633 -1.0238 0.0893 29 1 -0.3633 0.5892 0.8419 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.4268 2.0065 -1.2207 33 1 1.7543 3.1808 -1.0574 34 1 0.8624 3.6156 -4.5566 35 1 0.5957 1.9859 1.4230 36 1 1.9478 3.1187 1.1844 37 1 1.6920 2.6718 3.8112 38 1 2.4072 -1.3931 3.2331 39 1 1.2330 -1.6513 4.5457 40 1 1.0909 -0.2234 3.4926 41 1 3.1405 -1.8153 6.1353 42 1 4.5708 -0.5384 7.6786 43 1 4.9111 1.8747 7.3367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081055177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:48 Heat of formation + Delta-G solvation = 7.593286 kcal Electronic energy + Delta-G solvation = -27695.016123 eV Core-core repulsion = 23744.429277 eV Total energy + Delta-G solvation = -3950.586845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.40967 -40.81637 -39.07392 -36.91902 -36.56463 -34.86228 -33.45418 -32.58267 -31.19806 -29.70637 -28.35954 -27.35923 -26.62645 -25.21488 -23.21575 -22.76924 -22.35495 -20.69975 -19.57013 -19.05606 -18.73925 -17.80692 -17.62871 -17.05321 -16.30648 -16.13588 -15.52206 -15.36328 -14.77255 -14.44692 -14.27991 -14.11119 -13.77978 -13.74572 -12.99370 -12.84275 -12.59575 -12.42875 -12.33529 -11.97479 -11.79645 -11.68498 -11.58287 -11.31343 -11.23319 -11.16382 -10.98559 -10.77904 -10.63745 -10.40438 -10.04612 -9.99117 -9.64659 -9.53789 -9.20323 -8.87039 -8.42024 -7.24332 -6.02122 -4.02467 -0.36135 0.58033 1.13841 1.25254 2.61502 2.73171 3.00646 3.35407 3.39196 3.43075 3.98625 4.24228 4.41674 4.48494 4.52434 4.53948 4.90505 4.96220 5.05982 5.18750 5.34261 5.35514 5.43629 5.57785 5.61083 5.67799 5.76366 5.80745 5.85655 5.97490 6.01468 6.09557 6.17651 6.33351 6.43959 6.65440 6.91718 7.14433 7.26850 7.34499 7.52915 7.79047 8.03640 8.14403 8.21449 8.51073 9.04328 9.61249 11.08730 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.003227 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.958662 B = 8673.868306 C = 9480.716948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 N -0.516 5.516 4 C 0.189 3.811 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.036 3.964 14 C 0.521 3.479 15 O -0.495 6.495 16 N -0.684 5.684 17 C 0.223 3.777 18 C -0.079 4.079 19 C -0.112 4.112 20 C -0.056 4.056 21 C -0.127 4.127 22 C -0.052 4.052 23 C -0.063 4.063 24 N 0.036 4.964 25 O -0.166 6.166 26 O -0.159 6.159 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.001 0.999 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.421 0.579 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -7.320 23.415 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.073 4.073 3 N -0.240 5.240 4 C 0.065 3.935 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.096 4.096 14 C 0.310 3.690 15 O -0.366 6.366 16 N -0.337 5.337 17 C 0.126 3.874 18 C -0.082 4.082 19 C -0.168 4.168 20 C -0.075 4.075 21 C -0.146 4.146 22 C -0.071 4.071 23 C -0.149 4.149 24 N 0.554 4.446 25 O -0.380 6.380 26 O -0.374 6.374 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.019 0.981 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.261 0.739 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.880 -8.528 23.060 24.603 hybrid contribution -0.639 0.701 -0.737 1.201 sum 0.241 -7.827 22.324 23.657 Atomic orbital electron populations 1.22429 0.99713 1.00632 1.02100 1.22134 0.91464 0.91108 1.02606 1.62120 1.59608 1.02102 1.00155 1.19857 0.93923 0.93653 0.86069 1.21072 1.27290 1.15298 0.90517 0.91916 1.24955 0.95400 0.95060 0.99131 1.69938 1.36080 1.22291 1.25655 0.86558 0.79812 0.78780 0.82257 1.20309 1.21401 1.20171 1.21976 0.97300 1.00128 0.90173 1.21362 0.81863 0.83338 0.82445 1.90676 1.35452 1.27170 1.83291 1.44074 1.51226 1.33435 1.04919 1.17234 0.91153 0.91683 0.87363 1.20021 0.99400 0.91749 0.97053 1.20929 0.98289 0.99422 0.98161 1.21399 0.93152 1.00823 0.92095 1.21148 1.00078 0.92488 1.00880 1.20925 0.96172 0.95241 0.94799 1.21241 1.07934 0.81182 1.04513 1.43425 0.99012 1.02979 0.99203 1.94525 1.31707 1.67312 1.44440 1.94502 1.47363 1.69419 1.26083 0.91092 0.93411 0.94111 0.90213 0.91366 0.98097 0.95044 0.92880 0.92075 0.87649 0.73864 0.88738 0.91071 0.91459 0.83741 0.83485 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 9.19 37.16 0.34 -2.90 16 2 C 0.06 1.06 5.52 -3.82 -0.02 1.04 16 3 N -0.52 -10.94 4.42 -237.51 -1.05 -11.99 16 4 C 0.19 4.75 4.49 -4.98 -0.02 4.73 16 5 C -0.50 -14.02 8.63 -34.44 -0.30 -14.31 16 6 H 0.06 1.76 7.17 -52.49 -0.38 1.39 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.04 0.60 5.29 -4.97 -0.03 0.58 16 14 C 0.52 8.17 5.72 -10.98 -0.06 8.10 16 15 O -0.49 -9.05 11.66 5.55 0.06 -8.99 16 16 N -0.68 -8.70 3.57 -9.86 -0.04 -8.73 16 17 C 0.22 2.70 5.80 -83.69 -0.49 2.21 16 18 C -0.08 -0.81 5.49 -104.44 -0.57 -1.38 16 19 C -0.11 -1.12 8.28 36.00 0.30 -0.82 16 20 C -0.06 -0.41 9.72 -39.61 -0.39 -0.79 16 21 C -0.13 -0.82 10.04 -39.55 -0.40 -1.22 16 22 C -0.05 -0.45 9.55 -39.61 -0.38 -0.83 16 23 C -0.06 -0.74 6.86 -79.76 -0.55 -1.29 16 24 N 0.04 0.51 4.45 34.05 0.15 0.66 16 25 O -0.17 -2.37 18.46 -29.46 -0.54 -2.91 16 26 O -0.16 -2.37 16.36 -29.46 -0.48 -2.85 16 27 H 0.07 1.40 6.47 -51.93 -0.34 1.07 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.62 6.22 -51.93 -0.32 0.30 16 30 H 0.08 1.70 7.04 -51.93 -0.37 1.33 16 31 H 0.07 1.23 5.79 -51.93 -0.30 0.93 16 32 H 0.00 0.04 5.92 -51.93 -0.31 -0.27 16 33 H 0.03 0.85 7.87 -51.93 -0.41 0.44 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.06 0.91 6.13 -51.93 -0.32 0.60 16 36 H 0.11 1.74 7.90 -51.93 -0.41 1.33 16 37 H 0.42 4.62 7.40 -40.82 -0.30 4.32 16 38 H 0.09 1.13 7.15 -51.93 -0.37 0.75 16 39 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 40 H 0.07 0.74 6.31 -51.92 -0.33 0.42 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.15 1.09 7.62 -52.48 -0.40 0.69 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -33.02 352.82 -8.89 -41.91 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.37 Total: 1.90 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.65 Total: -5.41 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.20 Total: -45.71 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.96 Total: -14.75 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.02 -8.89 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081055177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.506 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds