Wall clock time and date at job start Tue Mar 31 2020 12:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46825 * 2 1 4 4 C 1.46893 * 111.00392 * 302.05672 * 3 2 1 5 5 C 1.50703 * 109.47008 * 291.15543 * 4 3 2 6 6 H 1.07996 * 119.99989 * 3.42638 * 5 4 3 7 7 C 1.37874 * 119.99920 * 183.42671 * 5 4 3 8 8 N 1.31514 * 120.00048 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00025 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47254 * 60.00213 * 9 7 5 11 11 H 1.48499 * 109.47398 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47295 * 300.00201 * 9 7 5 13 13 C 1.46902 * 110.99390 * 66.00945 * 3 2 1 14 14 C 1.50702 * 109.47485 * 66.04478 * 13 3 2 15 15 O 1.21288 * 119.99659 * 359.72497 * 14 13 3 16 16 N 1.34777 * 120.00202 * 179.97438 * 14 13 3 17 17 C 1.39929 * 119.99820 * 176.01935 * 16 14 13 18 18 C 1.38896 * 120.06647 * 305.69216 * 17 16 14 19 19 C 1.50692 * 120.03895 * 0.02562 * 18 17 16 20 20 C 1.38093 * 119.92498 * 179.74849 * 18 17 16 21 21 C 1.38308 * 120.07081 * 0.53204 * 20 18 17 22 22 C 1.38262 * 120.13814 * 359.74376 * 21 20 18 23 23 C 1.38132 * 120.07419 * 359.97438 * 22 21 20 24 24 N 1.48013 * 120.03659 * 180.02562 * 23 22 21 25 25 O 1.21796 * 120.00059 * 5.28804 * 24 23 22 26 26 O 1.21795 * 119.99917 * 185.28000 * 24 23 22 27 27 H 1.08996 * 109.47565 * 64.99202 * 1 2 3 28 28 H 1.09005 * 109.46912 * 184.98727 * 1 2 3 29 29 H 1.08996 * 109.47069 * 304.98629 * 1 2 3 30 30 H 1.09002 * 109.47061 * 240.00772 * 2 1 3 31 31 H 1.08996 * 109.47396 * 120.00868 * 2 1 3 32 32 H 1.09002 * 109.47204 * 51.15723 * 4 3 2 33 33 H 1.08997 * 109.47273 * 171.15490 * 4 3 2 34 34 H 0.97006 * 120.00299 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47168 * 306.04392 * 13 3 2 36 36 H 1.09004 * 109.47075 * 186.04182 * 13 3 2 37 37 H 0.96996 * 119.99991 * 356.01669 * 16 14 13 38 38 H 1.08998 * 109.47485 * 96.87249 * 19 18 17 39 39 H 1.09001 * 109.47725 * 216.88213 * 19 18 17 40 40 H 1.09010 * 109.47326 * 336.87743 * 19 18 17 41 41 H 1.07997 * 119.96576 * 180.24850 * 20 18 17 42 42 H 1.07994 * 119.93167 * 179.72063 * 21 20 18 43 43 H 1.08006 * 119.95969 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5089 2.1240 -1.1622 5 6 2.1415 1.5836 -2.4187 6 1 2.8094 0.7366 -2.3658 7 6 1.8677 2.1706 -3.6359 8 7 1.0548 3.2024 -3.7003 9 14 2.6524 1.5012 -5.1932 10 1 2.2508 0.0838 -5.3801 11 1 2.2002 2.3021 -6.3591 12 1 4.1306 1.5858 -5.0786 13 6 1.6693 2.0671 1.2530 14 6 2.4092 1.4252 2.3983 15 8 3.1511 0.4882 2.1918 16 7 2.2425 1.8891 3.6527 17 6 2.8638 1.2416 4.7264 18 6 2.6693 -0.1193 4.9251 19 6 1.7893 -0.9008 3.9841 20 6 3.2880 -0.7564 5.9825 21 6 4.0917 -0.0388 6.8497 22 6 4.2826 1.3171 6.6579 23 6 3.6712 1.9592 5.5987 24 7 3.8766 3.4106 5.3938 25 8 4.6595 4.0205 6.0998 26 8 3.2628 3.9950 4.5191 27 1 -0.3634 0.4344 -0.9313 28 1 -0.3633 -1.0238 0.0893 29 1 -0.3633 0.5892 0.8419 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.4268 2.0065 -1.2207 33 1 1.7543 3.1808 -1.0574 34 1 0.8624 3.6156 -4.5566 35 1 0.5957 1.9859 1.4230 36 1 1.9478 3.1187 1.1844 37 1 1.6920 2.6718 3.8112 38 1 2.4072 -1.3931 3.2331 39 1 1.2330 -1.6513 4.5457 40 1 1.0909 -0.2234 3.4926 41 1 3.1405 -1.8153 6.1353 42 1 4.5708 -0.5384 7.6786 43 1 4.9111 1.8747 7.3367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081055177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:47 Heat of formation + Delta-G solvation = -13.542718 kcal Electronic energy + Delta-G solvation = -27695.932649 eV Core-core repulsion = 23744.429277 eV Total energy + Delta-G solvation = -3951.503371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.39747 -41.85594 -40.10722 -38.33241 -37.73887 -35.91759 -34.70227 -34.20700 -32.15705 -31.12104 -30.01774 -28.31467 -27.59947 -26.75958 -25.01596 -23.71916 -23.28606 -21.89901 -21.03079 -20.01450 -19.73761 -18.76813 -18.59664 -18.45518 -18.05730 -17.40576 -16.68656 -16.61887 -16.21469 -15.88652 -15.32986 -15.30506 -14.84919 -14.80323 -14.46979 -14.17968 -13.64022 -13.48669 -13.36820 -13.14739 -13.10925 -12.97493 -12.75947 -12.73205 -12.59176 -12.56314 -12.49196 -12.35098 -12.30769 -11.93732 -11.68783 -11.39793 -11.19622 -10.84054 -10.58017 -10.39883 -9.72911 -8.93089 -8.18470 -6.26531 -1.27748 -0.12141 0.24131 0.34813 1.40336 1.41136 1.43489 1.51061 1.73542 2.27481 2.41691 3.13640 3.21471 3.34861 3.56752 3.64079 3.82600 3.94589 4.02690 4.19332 4.24325 4.27003 4.39377 4.50957 4.52574 4.67019 4.70582 4.77990 4.88950 4.97183 4.99827 5.08278 5.09189 5.19430 5.21355 5.25784 5.35843 5.48446 5.57399 5.67771 6.02806 6.14822 6.36436 6.44084 6.60105 6.87063 7.00496 7.41804 8.91821 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018801 B = 0.003227 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.958662 B = 8673.868306 C = 9480.716948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.060 3.940 3 N -0.534 5.534 4 C 0.206 3.794 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.034 3.966 14 C 0.531 3.469 15 O -0.524 6.524 16 N -0.672 5.672 17 C 0.192 3.808 18 C -0.092 4.092 19 C -0.108 4.108 20 C -0.041 4.041 21 C -0.106 4.106 22 C -0.052 4.052 23 C -0.082 4.082 24 N 0.037 4.963 25 O -0.171 6.171 26 O -0.198 6.198 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.084 0.916 32 H -0.010 1.010 33 H 0.005 0.995 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.426 0.574 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.183 0.817 42 H 0.193 0.807 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 -9.828 25.842 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.068 4.068 3 N -0.258 5.258 4 C 0.080 3.920 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.788 3.212 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.200 1.200 13 C -0.097 4.097 14 C 0.320 3.680 15 O -0.399 6.399 16 N -0.324 5.324 17 C 0.096 3.904 18 C -0.095 4.095 19 C -0.165 4.165 20 C -0.059 4.059 21 C -0.125 4.125 22 C -0.071 4.071 23 C -0.168 4.168 24 N 0.549 4.451 25 O -0.387 6.387 26 O -0.405 6.405 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.008 0.992 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.267 0.733 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.201 0.799 42 H 0.210 0.790 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.304 -11.005 25.500 27.804 hybrid contribution -0.733 1.386 -1.273 2.020 sum 0.572 -9.618 24.227 26.072 Atomic orbital electron populations 1.22288 0.97860 1.02422 1.01111 1.22073 0.92957 0.89798 1.01969 1.61917 1.60329 1.02922 1.00666 1.19476 0.92988 0.92385 0.87152 1.21372 1.27265 1.15170 0.92048 0.92756 1.25783 0.95845 0.95280 1.02341 1.70049 1.37223 1.23378 1.26519 0.85538 0.78752 0.78571 0.78369 1.19257 1.20646 1.19960 1.21978 0.98934 0.99707 0.89070 1.20871 0.81313 0.82827 0.83009 1.90656 1.36796 1.28527 1.83882 1.43736 1.50944 1.33308 1.04409 1.17516 0.92582 0.92780 0.87562 1.20253 1.00118 0.90889 0.98237 1.20879 0.97896 0.99657 0.98050 1.21913 0.91192 1.02591 0.90203 1.21701 0.98437 0.91191 1.01166 1.21363 0.95492 0.96461 0.93815 1.21505 1.09677 0.79516 1.06142 1.43799 0.98509 1.04098 0.98715 1.94486 1.31692 1.68215 1.44285 1.94490 1.48388 1.70459 1.27135 0.94228 0.90684 0.92314 0.92877 0.89803 0.99222 0.97731 0.92699 0.89894 0.87972 0.73256 0.90786 0.87940 0.93041 0.79933 0.78988 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.04 9.19 71.98 0.66 -5.38 16 2 C 0.06 2.34 5.52 86.30 0.48 2.82 16 3 N -0.53 -23.45 4.42 -905.36 -4.00 -27.45 16 4 C 0.21 10.79 4.49 85.56 0.38 11.17 16 5 C -0.52 -29.93 8.63 25.60 0.22 -29.70 16 6 H 0.05 3.15 7.17 -2.91 -0.02 3.13 16 7 C 0.01 0.32 5.46 84.65 0.46 0.79 16 8 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 9 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.03 1.19 5.29 85.56 0.45 1.64 16 14 C 0.53 16.92 5.72 87.66 0.50 17.42 16 15 O -0.52 -19.39 11.66 -3.06 -0.04 -19.43 16 16 N -0.67 -17.31 3.57 -303.50 -1.08 -18.39 16 17 C 0.19 4.48 5.80 38.15 0.22 4.71 16 18 C -0.09 -1.66 5.49 -19.74 -0.11 -1.77 16 19 C -0.11 -1.96 8.28 71.23 0.59 -1.37 16 20 C -0.04 -0.40 9.72 22.25 0.22 -0.19 16 21 C -0.11 -0.85 10.04 22.29 0.22 -0.62 16 22 C -0.05 -0.75 9.55 22.25 0.21 -0.54 16 23 C -0.08 -1.87 6.86 36.50 0.25 -1.62 16 24 N 0.04 1.04 4.45 -46.18 -0.21 0.84 16 25 O -0.17 -4.89 18.46 18.89 0.35 -4.54 16 26 O -0.20 -6.16 16.36 18.89 0.31 -5.85 16 27 H 0.04 1.59 6.47 -2.39 -0.02 1.57 16 28 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.06 1.75 6.22 -2.39 -0.01 1.74 16 30 H 0.05 2.33 7.04 -2.39 -0.02 2.31 16 31 H 0.08 3.04 5.79 -2.39 -0.01 3.02 16 32 H -0.01 -0.53 5.92 -2.39 -0.01 -0.54 16 33 H 0.00 0.26 7.87 -2.39 -0.02 0.24 16 34 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 35 H 0.08 2.49 6.13 -2.39 -0.01 2.48 16 36 H 0.10 3.57 7.90 -2.38 -0.02 3.56 16 37 H 0.43 9.73 7.40 -92.71 -0.69 9.04 16 38 H 0.07 1.67 7.15 -2.39 -0.02 1.66 16 39 H 0.10 1.13 8.13 -2.39 -0.02 1.11 16 40 H 0.05 1.08 6.31 -2.38 -0.02 1.06 16 41 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 42 H 0.19 -0.11 8.06 -2.91 -0.02 -0.14 16 43 H 0.17 1.86 7.62 -2.91 -0.02 1.84 16 Total: -1.00 -75.26 352.82 2.78 -72.48 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.38 Total: 13.36 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.77 Total: -2.64 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -5.01 Total: -100.59 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: 0.62 Total: -29.82 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.26 2.78 -72.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081055177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.936 kcal (2) G-P(sol) polarization free energy of solvation -75.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds