Wall clock time and date at job start Tue Mar 31 2020 13:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00106 * 2 1 4 4 C 1.53000 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46683 * 184.23514 * 4 3 2 6 6 N 1.29956 * 126.28124 * 94.69088 * 5 4 3 7 7 O 1.21302 * 110.24710 * 180.02562 * 6 5 4 8 8 C 1.33637 * 109.81224 * 359.97438 * 7 6 5 9 9 C 1.50706 * 126.55277 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47031 * 267.84225 * 9 8 7 11 11 C 1.46896 * 111.00325 * 72.13964 * 10 9 8 12 12 C 1.50706 * 109.47101 * 190.00197 * 11 10 9 13 13 H 1.07992 * 119.99860 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99593 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99615 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00236 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46906 * 90.00434 * 16 14 12 18 18 H 1.48500 * 109.47069 * 210.00498 * 16 14 12 19 19 H 1.48500 * 109.47268 * 330.00207 * 16 14 12 20 20 C 1.46896 * 110.99760 * 196.09801 * 10 9 8 21 21 C 1.50697 * 109.47543 * 75.16349 * 20 10 9 22 22 C 1.34515 * 125.78906 * 85.63385 * 21 20 10 23 23 C 1.41388 * 106.83856 * 180.02562 * 22 21 20 24 24 C 1.34513 * 106.84057 * 0.02562 * 23 22 21 25 25 O 1.34303 * 108.42222 * 359.73431 * 24 23 22 26 26 N 1.31129 * 106.89888 * 0.23114 * 8 7 6 27 27 H 1.09001 * 109.47607 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47602 * 300.00125 * 1 2 3 29 29 H 1.09004 * 109.47018 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.46965 * 60.00078 * 3 2 1 31 31 H 1.08997 * 109.47137 * 300.00157 * 3 2 1 32 32 H 1.09004 * 109.46445 * 64.24249 * 4 3 2 33 33 H 1.08996 * 109.47260 * 304.23932 * 4 3 2 34 34 H 1.09000 * 109.47575 * 147.83656 * 9 8 7 35 35 H 1.09002 * 109.46655 * 27.83490 * 9 8 7 36 36 H 1.09000 * 109.47261 * 309.99990 * 11 10 9 37 37 H 1.09001 * 109.47329 * 70.00297 * 11 10 9 38 38 H 0.97002 * 120.00142 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.46830 * 195.16232 * 20 10 9 40 40 H 1.08996 * 109.47302 * 315.15935 * 20 10 9 41 41 H 1.08000 * 126.58373 * 0.04275 * 22 21 20 42 42 H 1.07999 * 126.57589 * 179.97438 * 23 22 21 43 43 H 1.07999 * 125.78483 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1480 2.5574 0.1056 6 7 4.5323 3.1466 1.1983 7 8 4.9828 4.2445 0.9472 8 6 4.9274 4.4665 -0.3695 9 6 5.3857 5.7081 -1.0904 10 7 4.2586 6.6407 -1.2242 11 6 3.9214 7.2483 0.0700 12 6 2.6216 8.0012 -0.0519 13 1 2.0982 8.0255 -0.9962 14 6 2.1008 8.6590 1.0422 15 7 0.9669 9.3165 0.9357 16 14 3.0059 8.6164 2.6757 17 1 3.9494 9.7608 2.7489 18 1 2.0257 8.7111 3.7873 19 1 3.7619 7.3433 2.7897 20 6 4.5449 7.6713 -2.2311 21 6 4.4229 7.0746 -3.6095 22 6 3.2859 6.9595 -4.3191 23 6 3.6292 6.3468 -5.5462 24 6 4.9553 6.1238 -5.5129 25 8 5.4316 6.5716 -4.3397 26 7 4.3930 3.3999 -0.9137 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8627 0.7105 -0.9248 33 1 3.8517 0.5796 0.8504 34 1 5.7538 5.4385 -2.0803 35 1 6.1853 6.1837 -0.5224 36 1 3.8193 6.4666 0.8227 37 1 4.7135 7.9363 0.3657 38 1 0.6002 9.7790 1.7055 39 1 3.8332 8.4901 -2.1254 40 1 5.5571 8.0488 -2.0869 41 1 2.3000 7.2747 -4.0107 42 1 2.9557 6.1038 -6.3548 43 1 5.5387 5.6668 -6.2985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081517747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:53 Heat of formation + Delta-G solvation = 51.581135 kcal Electronic energy + Delta-G solvation = -27130.179554 eV Core-core repulsion = 23181.500164 eV Total energy + Delta-G solvation = -3948.679389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.34115 -42.20293 -38.12975 -37.43098 -35.87374 -33.37706 -32.71144 -32.51419 -31.07840 -30.20317 -28.55250 -26.78422 -26.59404 -24.29069 -24.17921 -22.91230 -21.41785 -21.25483 -20.62556 -19.88066 -17.96102 -17.37411 -17.05752 -16.86852 -16.49020 -16.16901 -15.94288 -15.21691 -15.14004 -14.90214 -14.57582 -14.00307 -13.85652 -13.65338 -13.14193 -13.02978 -12.52235 -12.47535 -12.45560 -12.35996 -12.34865 -11.87985 -11.65246 -11.58844 -11.46826 -11.39404 -11.13482 -10.81023 -10.77197 -10.56222 -9.98417 -9.81985 -9.71938 -9.57194 -9.48346 -8.70610 -8.14364 -7.85451 -6.17712 -4.17680 1.34572 2.03755 2.36783 2.96845 3.05647 3.21033 3.29710 3.31420 3.33594 3.40689 3.97620 4.28113 4.31917 4.58893 4.86786 4.92802 5.02387 5.14059 5.15599 5.23336 5.25913 5.29136 5.32734 5.36372 5.39618 5.50575 5.55721 5.67225 5.72792 5.80667 5.99176 6.06635 6.17063 6.20719 6.34585 6.43440 6.55982 6.63183 6.86606 6.94489 7.27471 7.49160 7.50023 7.66328 8.38538 8.44569 8.88778 9.42341 10.94469 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.007087 B = 0.005117 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3949.992389 B = 5470.772151 C = 7614.377820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.067 3.933 4 C -0.021 4.021 5 C 0.164 3.836 6 N -0.383 5.383 7 O 0.079 5.921 8 C 0.212 3.788 9 C 0.138 3.862 10 N -0.517 5.517 11 C 0.157 3.843 12 C -0.518 4.518 13 H 0.085 0.915 14 C 0.075 3.925 15 N -0.893 5.893 16 Si 0.867 3.133 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.143 3.857 21 C 0.000 4.000 22 C -0.188 4.188 23 C -0.212 4.212 24 C -0.055 4.055 25 O -0.184 6.184 26 N -0.467 5.467 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.033 0.967 37 H -0.003 1.003 38 H 0.266 0.734 39 H 0.131 0.869 40 H 0.048 0.952 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.897 -11.252 -7.260 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.059 4.059 5 C -0.109 4.109 6 N -0.091 5.091 7 O 0.020 5.980 8 C -0.009 4.009 9 C 0.008 3.992 10 N -0.243 5.243 11 C 0.032 3.968 12 C -0.556 4.556 13 H 0.103 0.897 14 C -0.128 4.128 15 N -0.531 5.531 16 Si 0.694 3.306 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.188 1.188 20 C 0.016 3.984 21 C -0.050 4.050 22 C -0.208 4.208 23 C -0.232 4.232 24 C -0.122 4.122 25 O -0.081 6.081 26 N -0.201 5.201 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.015 0.985 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.066 0.934 41 H 0.167 0.833 42 H 0.160 0.840 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.544 -12.201 -6.729 15.393 hybrid contribution 0.490 0.785 1.030 1.385 sum 7.034 -11.416 -5.699 14.570 Atomic orbital electron populations 1.22757 0.80461 1.02695 1.00496 1.87781 1.20179 1.27582 1.95592 1.22394 0.92190 0.84818 1.01660 1.19621 0.93408 0.87431 1.05486 1.25465 1.01524 0.99561 0.84326 1.74606 1.16097 0.94484 1.23896 1.85311 1.58831 1.26465 1.27405 1.28655 0.94229 0.97289 0.80752 1.20601 0.93329 0.86261 0.99043 1.61793 1.34032 1.17877 1.10586 1.20380 0.97222 0.94223 0.84964 1.20913 1.04769 1.30604 0.99298 0.89744 1.24849 0.94726 0.94725 0.98491 1.69872 1.18987 1.33259 1.30984 0.86971 0.80139 0.79249 0.84225 1.19955 1.20993 1.18815 1.20547 1.02069 0.93347 0.82404 1.22594 0.85806 1.01783 0.94853 1.21612 0.99543 1.05105 0.94504 1.21814 0.95714 1.05800 0.99845 1.23827 0.95000 1.04832 0.88578 1.83973 1.37547 1.60844 1.25707 1.71876 1.16403 1.01656 1.30125 0.89508 0.93850 0.93726 0.92749 0.91987 0.87984 0.88440 0.86900 0.91202 0.94954 0.98524 0.92443 0.85155 0.93393 0.83343 0.84019 0.78789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.01 10.70 -35.23 -0.38 -5.39 16 3 C 0.07 0.90 5.92 37.16 0.22 1.12 16 4 C -0.02 -0.27 6.21 -27.88 -0.17 -0.44 16 5 C 0.16 2.74 7.47 -156.37 -1.17 1.57 16 6 N -0.38 -6.94 12.16 30.90 0.38 -6.57 16 7 O 0.08 1.45 10.73 18.11 0.19 1.65 16 8 C 0.21 3.74 7.26 -13.06 -0.09 3.64 16 9 C 0.14 2.19 5.43 -4.97 -0.03 2.16 16 10 N -0.52 -9.80 4.36 -238.96 -1.04 -10.84 16 11 C 0.16 3.48 3.64 -4.98 -0.02 3.46 16 12 C -0.52 -13.62 8.79 -34.44 -0.30 -13.92 16 13 H 0.08 2.40 7.55 -52.49 -0.40 2.01 16 14 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 16 Si 0.87 20.59 27.47 -169.99 -4.67 15.92 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 20 C 0.14 2.42 5.34 -4.98 -0.03 2.40 16 21 C 0.00 0.00 6.14 -35.63 -0.22 -0.22 16 22 C -0.19 -3.06 10.81 -39.70 -0.43 -3.49 16 23 C -0.21 -2.92 10.91 -39.70 -0.43 -3.35 16 24 C -0.05 -0.69 12.09 29.42 0.36 -0.34 16 25 O -0.18 -2.74 10.17 5.70 0.06 -2.68 16 26 N -0.47 -8.34 11.55 -9.87 -0.11 -8.45 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.11 1.66 6.92 -51.93 -0.36 1.30 16 35 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.03 0.76 5.87 -51.93 -0.31 0.46 16 37 H 0.00 -0.06 7.55 -51.93 -0.39 -0.45 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.13 2.43 6.58 -51.93 -0.34 2.09 16 40 H 0.05 0.70 8.01 -51.93 -0.42 0.29 16 41 H 0.15 2.49 8.06 -52.49 -0.42 2.07 16 42 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -31.45 368.35 -6.57 -38.03 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.02 Total: 2.15 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.30 Total: -4.02 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.01 Total: -51.21 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.12 Total: -6.42 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.45 -6.57 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.607 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds