Wall clock time and date at job start Tue Mar 31 2020 13:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00106 * 2 1 4 4 C 1.53000 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46683 * 184.23514 * 4 3 2 6 6 N 1.29956 * 126.28124 * 94.69088 * 5 4 3 7 7 O 1.21302 * 110.24710 * 180.02562 * 6 5 4 8 8 C 1.33637 * 109.81224 * 359.97438 * 7 6 5 9 9 C 1.50706 * 126.55277 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47031 * 267.84225 * 9 8 7 11 11 C 1.46896 * 111.00325 * 72.13964 * 10 9 8 12 12 C 1.50706 * 109.47101 * 190.00197 * 11 10 9 13 13 H 1.07992 * 119.99860 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99593 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99615 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00236 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46906 * 90.00434 * 16 14 12 18 18 H 1.48500 * 109.47069 * 210.00498 * 16 14 12 19 19 H 1.48500 * 109.47268 * 330.00207 * 16 14 12 20 20 C 1.46896 * 110.99760 * 196.09801 * 10 9 8 21 21 C 1.50697 * 109.47543 * 75.16349 * 20 10 9 22 22 C 1.34515 * 125.78906 * 85.63385 * 21 20 10 23 23 C 1.41388 * 106.83856 * 180.02562 * 22 21 20 24 24 C 1.34513 * 106.84057 * 0.02562 * 23 22 21 25 25 O 1.34303 * 108.42222 * 359.73431 * 24 23 22 26 26 N 1.31129 * 106.89888 * 0.23114 * 8 7 6 27 27 H 1.09001 * 109.47607 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47602 * 300.00125 * 1 2 3 29 29 H 1.09004 * 109.47018 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.46965 * 60.00078 * 3 2 1 31 31 H 1.08997 * 109.47137 * 300.00157 * 3 2 1 32 32 H 1.09004 * 109.46445 * 64.24249 * 4 3 2 33 33 H 1.08996 * 109.47260 * 304.23932 * 4 3 2 34 34 H 1.09000 * 109.47575 * 147.83656 * 9 8 7 35 35 H 1.09002 * 109.46655 * 27.83490 * 9 8 7 36 36 H 1.09000 * 109.47261 * 309.99990 * 11 10 9 37 37 H 1.09001 * 109.47329 * 70.00297 * 11 10 9 38 38 H 0.97002 * 120.00142 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.46830 * 195.16232 * 20 10 9 40 40 H 1.08996 * 109.47302 * 315.15935 * 20 10 9 41 41 H 1.08000 * 126.58373 * 0.04275 * 22 21 20 42 42 H 1.07999 * 126.57589 * 179.97438 * 23 22 21 43 43 H 1.07999 * 125.78483 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1480 2.5574 0.1056 6 7 4.5323 3.1466 1.1983 7 8 4.9828 4.2445 0.9472 8 6 4.9274 4.4665 -0.3695 9 6 5.3857 5.7081 -1.0904 10 7 4.2586 6.6407 -1.2242 11 6 3.9214 7.2483 0.0700 12 6 2.6216 8.0012 -0.0519 13 1 2.0982 8.0255 -0.9962 14 6 2.1008 8.6590 1.0422 15 7 0.9669 9.3165 0.9357 16 14 3.0059 8.6164 2.6757 17 1 3.9494 9.7608 2.7489 18 1 2.0257 8.7111 3.7873 19 1 3.7619 7.3433 2.7897 20 6 4.5449 7.6713 -2.2311 21 6 4.4229 7.0746 -3.6095 22 6 3.2859 6.9595 -4.3191 23 6 3.6292 6.3468 -5.5462 24 6 4.9553 6.1238 -5.5129 25 8 5.4316 6.5716 -4.3397 26 7 4.3930 3.3999 -0.9137 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8627 0.7105 -0.9248 33 1 3.8517 0.5796 0.8504 34 1 5.7538 5.4385 -2.0803 35 1 6.1853 6.1837 -0.5224 36 1 3.8193 6.4666 0.8227 37 1 4.7135 7.9363 0.3657 38 1 0.6002 9.7790 1.7055 39 1 3.8332 8.4901 -2.1254 40 1 5.5571 8.0488 -2.0869 41 1 2.3000 7.2747 -4.0107 42 1 2.9557 6.1038 -6.3548 43 1 5.5387 5.6668 -6.2985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081517747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:52 Heat of formation + Delta-G solvation = 28.303342 kcal Electronic energy + Delta-G solvation = -27131.188954 eV Core-core repulsion = 23181.500164 eV Total energy + Delta-G solvation = -3949.688790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.68272 -43.34623 -39.12299 -38.89913 -37.16150 -34.91610 -34.39325 -33.76480 -32.23734 -31.57226 -30.20586 -27.97550 -27.65058 -25.74488 -25.45522 -24.24837 -22.79185 -22.56445 -21.93344 -21.13702 -19.34240 -19.03014 -18.50650 -18.16492 -17.53052 -17.38505 -17.09148 -16.52398 -16.40382 -16.17838 -16.05070 -15.40690 -15.13676 -14.86507 -14.50150 -14.41738 -14.11965 -13.91354 -13.65343 -13.52063 -13.49776 -13.25813 -13.17956 -12.79341 -12.68305 -12.55673 -12.46122 -12.33603 -12.21021 -12.07425 -11.86469 -11.53416 -11.08401 -10.79966 -10.79337 -10.72191 -9.37193 -9.24737 -8.29257 -6.32860 -0.00517 0.87691 1.07778 1.33589 1.38039 1.46271 1.71457 1.83395 2.16812 2.31340 2.32914 2.78433 3.04365 3.13357 3.19607 3.73889 3.85796 3.88823 3.98231 4.13280 4.18457 4.24971 4.27104 4.36026 4.45834 4.47876 4.50146 4.55373 4.61991 4.72748 4.79387 4.81281 4.86984 4.87616 4.94031 5.02871 5.18243 5.33379 5.46979 5.70258 5.81283 5.99665 6.01138 6.34349 6.46803 6.74274 7.04483 7.30565 8.86510 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.007087 B = 0.005117 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3949.992389 B = 5470.772151 C = 7614.377820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.400 6.400 3 C 0.074 3.926 4 C -0.018 4.018 5 C 0.168 3.832 6 N -0.400 5.400 7 O 0.065 5.935 8 C 0.208 3.792 9 C 0.141 3.859 10 N -0.536 5.536 11 C 0.170 3.830 12 C -0.514 4.514 13 H 0.046 0.954 14 C 0.018 3.982 15 N -0.943 5.943 16 Si 0.931 3.069 17 H -0.257 1.257 18 H -0.288 1.288 19 H -0.253 1.253 20 C 0.149 3.851 21 C -0.014 4.014 22 C -0.210 4.210 23 C -0.229 4.229 24 C -0.035 4.035 25 O -0.185 6.185 26 N -0.482 5.482 27 H 0.111 0.889 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.022 0.978 37 H 0.014 0.986 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.163 0.837 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 -12.797 -7.834 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C -0.005 4.005 4 C -0.056 4.056 5 C -0.105 4.105 6 N -0.111 5.111 7 O 0.009 5.991 8 C -0.013 4.013 9 C 0.011 3.989 10 N -0.262 5.262 11 C 0.043 3.957 12 C -0.553 4.553 13 H 0.064 0.936 14 C -0.181 4.181 15 N -0.583 5.583 16 Si 0.755 3.245 17 H -0.181 1.181 18 H -0.214 1.214 19 H -0.177 1.177 20 C 0.022 3.978 21 C -0.064 4.064 22 C -0.231 4.231 23 C -0.248 4.248 24 C -0.102 4.102 25 O -0.082 6.082 26 N -0.217 5.217 27 H 0.129 0.871 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.040 0.960 37 H 0.032 0.968 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.146 0.854 42 H 0.181 0.819 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 8.859 -13.737 -7.321 17.911 hybrid contribution -0.304 1.191 1.032 1.605 sum 8.555 -12.546 -6.289 16.436 Atomic orbital electron populations 1.22989 0.79029 1.04417 1.00729 1.87764 1.21748 1.26847 1.95592 1.22237 0.92492 0.85160 1.00570 1.19763 0.92948 0.85877 1.07032 1.26025 1.00482 1.00322 0.83677 1.74595 1.17151 0.94729 1.24598 1.85281 1.59268 1.26753 1.27768 1.29033 0.93867 0.97729 0.80654 1.20761 0.92766 0.85006 1.00338 1.61568 1.36592 1.18697 1.09350 1.20076 0.95428 0.93627 0.86540 1.21148 1.06149 1.30319 0.97648 0.93596 1.25687 0.95495 0.94545 1.02345 1.70024 1.21088 1.35047 1.32134 0.85952 0.79089 0.80170 0.79312 1.18097 1.21433 1.17671 1.20351 1.02648 0.92247 0.82506 1.22302 0.86177 1.03089 0.94848 1.21724 0.98986 1.06013 0.96340 1.22083 0.96984 1.06213 0.99477 1.24737 0.94986 1.02388 0.88066 1.83969 1.36967 1.60806 1.26409 1.71896 1.16850 1.02175 1.30742 0.87092 0.93716 0.93431 0.93982 0.92988 0.86307 0.86959 0.85326 0.88129 0.95984 0.96793 0.92466 0.88001 0.90622 0.85391 0.81906 0.74104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.40 -9.71 10.70 -148.98 -1.59 -11.30 16 3 C 0.07 1.93 5.92 71.98 0.43 2.36 16 4 C -0.02 -0.44 6.21 29.85 0.19 -0.25 16 5 C 0.17 5.43 7.47 138.46 1.03 6.47 16 6 N -0.40 -14.18 12.16 -60.31 -0.73 -14.91 16 7 O 0.07 2.33 10.73 74.88 0.80 3.14 16 8 C 0.21 7.08 7.26 88.38 0.64 7.72 16 9 C 0.14 4.19 5.43 85.56 0.46 4.66 16 10 N -0.54 -20.05 4.36 -909.94 -3.97 -24.02 16 11 C 0.17 7.43 3.64 85.56 0.31 7.74 16 12 C -0.51 -27.89 8.79 25.60 0.23 -27.66 16 13 H 0.05 2.78 7.55 -2.91 -0.02 2.76 16 14 C 0.02 0.98 5.47 84.66 0.46 1.44 16 15 N -0.94 -57.13 13.96 21.45 0.30 -56.83 16 16 Si 0.93 42.50 27.47 68.60 1.88 44.39 16 17 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 20 C 0.15 5.01 5.34 85.56 0.46 5.47 16 21 C -0.01 -0.45 6.14 24.83 0.15 -0.30 16 22 C -0.21 -6.98 10.81 22.19 0.24 -6.74 16 23 C -0.23 -5.91 10.91 22.19 0.24 -5.67 16 24 C -0.03 -0.76 12.09 66.97 0.81 0.05 16 25 O -0.18 -5.04 10.17 -2.51 -0.03 -5.07 16 26 N -0.48 -16.73 11.55 -303.18 -3.50 -20.23 16 27 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.13 3.44 6.92 -2.39 -0.02 3.43 16 35 H 0.10 2.41 8.05 -2.39 -0.02 2.39 16 36 H 0.02 1.02 5.87 -2.39 -0.01 1.01 16 37 H 0.01 0.58 7.55 -2.39 -0.02 0.56 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.10 3.98 6.58 -2.39 -0.02 3.97 16 40 H 0.08 2.08 8.01 -2.39 -0.02 2.06 16 41 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.16 3.38 8.06 -2.91 -0.02 3.35 16 43 H 0.24 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -70.02 368.35 1.02 -69.00 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.96 Total: 18.85 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 6.90 Total: -3.01 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -7.91 Total: -115.99 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.82 Total: -13.23 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.39 kcal Total: -70.02 1.02 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081517747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.301 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds