Wall clock time and date at job start Tue Mar 31 2020 13:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99748 * 2 1 4 4 C 1.50698 * 109.47167 * 269.99799 * 3 2 1 5 5 H 1.08003 * 120.00125 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00219 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99702 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00216 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46747 * 90.00075 * 8 6 4 10 10 H 1.48498 * 109.47183 * 209.99912 * 8 6 4 11 11 H 1.48500 * 109.47068 * 330.00536 * 8 6 4 12 12 C 1.34774 * 120.00278 * 179.97438 * 2 1 3 13 13 O 1.21588 * 120.00360 * 179.97438 * 12 2 1 14 14 N 1.34776 * 119.99583 * 0.02562 * 12 2 1 15 15 C 1.40169 * 119.99846 * 184.43484 * 14 12 2 16 16 C 1.38714 * 120.08572 * 325.33697 * 15 14 12 17 17 C 1.38200 * 119.98416 * 180.02562 * 16 15 14 18 18 C 1.38274 * 120.16499 * 359.97438 * 17 16 15 19 19 C 1.38251 * 120.17405 * 0.02562 * 18 17 16 20 20 C 1.38541 * 120.01336 * 359.97438 * 19 18 17 21 21 O 1.35989 * 120.08104 * 180.02562 * 20 19 18 22 22 C 1.42898 * 116.99760 * 359.97438 * 21 20 19 23 23 C 1.52999 * 109.46976 * 179.97438 * 22 21 20 24 24 C 1.50699 * 109.47248 * 180.02562 * 23 22 21 25 25 N 1.34780 * 119.99803 * 179.97438 * 24 23 22 26 26 O 1.21282 * 120.00096 * 0.02562 * 24 23 22 27 27 H 1.09002 * 109.46929 * 269.99699 * 1 2 3 28 28 H 1.09002 * 109.47507 * 29.99641 * 1 2 3 29 29 H 1.08995 * 109.46987 * 150.00382 * 1 2 3 30 30 H 1.08998 * 109.47428 * 30.00102 * 3 2 1 31 31 H 1.09007 * 109.46819 * 150.00198 * 3 2 1 32 32 H 0.96998 * 119.99686 * 180.02562 * 7 6 4 33 33 H 0.96998 * 120.00426 * 4.42804 * 14 12 2 34 34 H 1.07994 * 120.00435 * 0.02562 * 16 15 14 35 35 H 1.08005 * 119.91887 * 180.02562 * 17 16 15 36 36 H 1.07999 * 119.91598 * 179.72308 * 18 17 16 37 37 H 1.07995 * 119.99342 * 179.97438 * 19 18 17 38 38 H 1.08995 * 109.47185 * 300.00000 * 22 21 20 39 39 H 1.09005 * 109.46928 * 60.00470 * 22 21 20 40 40 H 1.09003 * 109.47404 * 300.00710 * 23 22 21 41 41 H 1.09002 * 109.47378 * 60.00047 * 23 22 21 42 42 H 0.96991 * 120.00443 * 0.02562 * 25 24 23 43 43 H 0.97007 * 119.99725 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5550 3.6172 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.3077 4.2607 -3.8998 10 1 4.6982 4.1994 -3.4968 11 1 3.5537 2.2202 -4.3052 12 6 2.1389 -1.1671 0.0005 13 8 3.3548 -1.1672 0.0001 14 7 1.4650 -2.3343 0.0005 15 6 2.1627 -3.5464 0.0949 16 6 3.4084 -3.6799 -0.5004 17 6 4.0942 -4.8760 -0.4065 18 6 3.5420 -5.9414 0.2805 19 6 2.3009 -5.8158 0.8764 20 6 1.6070 -4.6200 0.7868 21 8 0.3863 -4.4947 1.3728 22 6 -0.1213 -5.6372 2.0650 23 6 -1.4944 -5.3080 2.6543 24 6 -2.0295 -6.5126 3.3847 25 7 -3.2330 -6.4547 3.9886 26 8 -1.3767 -7.5337 3.4300 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 4.0318 4.4430 -0.8504 33 1 0.4972 -2.3356 -0.0647 34 1 3.8422 -2.8492 -1.0372 35 1 5.0643 -4.9786 -0.8701 36 1 4.0795 -6.8758 0.3476 37 1 1.8721 -6.6499 1.4118 38 1 -0.2145 -6.4714 1.3697 39 1 0.5630 -5.9087 2.8688 40 1 -1.4008 -4.4737 3.3496 41 1 -2.1790 -5.0361 1.8508 42 1 -3.7549 -5.6380 3.9528 43 1 -3.5777 -7.2303 4.4585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085565727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:00 Heat of formation + Delta-G solvation = -69.345419 kcal Electronic energy + Delta-G solvation = -26561.680414 eV Core-core repulsion = 22607.757256 eV Total energy + Delta-G solvation = -3953.923158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61364 -39.95571 -39.10187 -37.29085 -34.95476 -34.26838 -34.18797 -32.54500 -32.16691 -29.94872 -29.03220 -27.56414 -25.73725 -25.13983 -23.34279 -22.06177 -21.79965 -20.74415 -19.31241 -18.60683 -17.67514 -17.62537 -16.91392 -16.66054 -16.60312 -16.43828 -15.58366 -15.16353 -15.03620 -14.66936 -14.55717 -14.16870 -13.86758 -13.67108 -13.43768 -13.29672 -12.96811 -12.66960 -12.18839 -12.12184 -11.99391 -11.82315 -11.51528 -11.22218 -11.09079 -10.91256 -10.89530 -10.55330 -10.52517 -10.20822 -10.14124 -9.98894 -9.61945 -9.18110 -8.42492 -8.39903 -7.80209 -7.44326 -6.02388 -4.07040 1.50924 1.56660 2.13186 2.61560 3.25300 3.31285 3.38226 3.43320 3.47296 3.75855 4.12044 4.25206 4.42537 4.56286 4.58090 4.66439 4.95878 5.01402 5.09833 5.28476 5.31565 5.34643 5.43893 5.53538 5.60823 5.74862 5.88524 6.04971 6.13357 6.24889 6.30796 6.42677 6.69207 6.77399 6.82438 6.85970 7.05244 7.38103 7.48586 7.54314 7.71579 7.73611 7.96089 8.25137 8.63111 8.94060 9.28953 9.58463 11.05448 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002820 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.259151 B = 9928.117616 C =11257.371550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.613 5.613 3 C 0.260 3.740 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.699 3.301 13 O -0.571 6.571 14 N -0.689 5.689 15 C 0.154 3.846 16 C -0.088 4.088 17 C -0.134 4.134 18 C -0.109 4.109 19 C -0.191 4.191 20 C 0.092 3.908 21 O -0.318 6.318 22 C 0.077 3.923 23 C -0.143 4.143 24 C 0.524 3.476 25 N -0.854 5.854 26 O -0.543 6.543 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.403 0.597 34 H 0.153 0.847 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.404 0.596 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.009 -19.369 6.962 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.348 5.348 3 C 0.140 3.860 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.401 3.599 13 O -0.447 6.447 14 N -0.339 5.339 15 C 0.058 3.942 16 C -0.108 4.108 17 C -0.153 4.153 18 C -0.128 4.128 19 C -0.210 4.210 20 C 0.045 3.955 21 O -0.233 6.233 22 C 0.001 3.999 23 C -0.183 4.183 24 C 0.309 3.691 25 N -0.418 5.418 26 O -0.420 6.420 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.170 0.830 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.233 0.767 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.618 -19.440 6.949 24.195 hybrid contribution -0.840 0.305 -0.682 1.124 sum -13.458 -19.135 6.267 24.218 Atomic orbital electron populations 1.21572 0.81715 1.02245 1.00367 1.47476 1.05702 1.06297 1.75309 1.19246 0.92401 0.76859 0.97460 1.21459 1.36403 1.06211 0.92385 0.92477 1.24931 0.95372 0.96419 0.97404 1.69935 1.38445 1.14355 1.30695 0.86496 0.77643 0.78564 0.84699 1.20701 1.21098 1.19911 1.15906 0.85533 0.80042 0.78463 1.90870 1.11360 1.85520 1.56974 1.42765 1.10046 1.03210 1.77858 1.16905 0.94207 0.84160 0.98941 1.21389 0.93282 0.98332 0.97818 1.21006 1.00414 0.92794 1.01122 1.20852 0.94926 0.98850 0.98159 1.20999 0.97393 0.96612 1.06000 1.18649 0.86112 0.94641 0.96093 1.85910 1.31597 1.38446 1.67325 1.22315 0.93761 0.87472 0.96364 1.21473 0.97494 0.97528 1.01844 1.20356 0.81155 0.89251 0.78318 1.43827 1.20756 1.19332 1.57900 1.90787 1.57961 1.32757 1.60475 0.93701 0.90361 0.93192 0.94807 0.93643 0.92726 0.75993 0.82984 0.85754 0.86086 0.85377 0.91229 0.91191 0.87363 0.87432 0.76733 0.76563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.24 59.85 0.61 1.96 16 2 N -0.61 -13.23 2.86 -188.74 -0.54 -13.77 16 3 C 0.26 6.82 5.16 -5.19 -0.03 6.80 16 4 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 12 C 0.70 15.30 8.13 -86.92 -0.71 14.59 16 13 O -0.57 -14.71 13.34 5.29 0.07 -14.64 16 14 N -0.69 -11.98 5.07 -14.10 -0.07 -12.05 16 15 C 0.15 2.60 6.32 -83.48 -0.53 2.08 16 16 C -0.09 -1.51 8.70 -39.42 -0.34 -1.85 16 17 C -0.13 -1.90 10.04 -39.58 -0.40 -2.29 16 18 C -0.11 -1.35 10.04 -39.56 -0.40 -1.75 16 19 C -0.19 -2.42 9.04 -39.46 -0.36 -2.78 16 20 C 0.09 1.32 6.70 -39.08 -0.26 1.06 16 21 O -0.32 -3.92 9.70 -19.71 -0.19 -4.11 16 22 C 0.08 0.74 4.03 37.16 0.15 0.89 16 23 C -0.14 -0.92 6.07 -27.88 -0.17 -1.09 16 24 C 0.52 3.92 8.10 -10.98 -0.09 3.83 16 25 N -0.85 -3.13 8.87 31.22 0.28 -2.86 16 26 O -0.54 -6.46 16.82 5.56 0.09 -6.37 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.05 0.64 6.30 -51.93 -0.33 0.31 16 30 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.40 5.85 6.26 -40.82 -0.26 5.59 16 34 H 0.15 3.02 6.19 -52.49 -0.33 2.69 16 35 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 38 H 0.07 0.67 7.62 -51.93 -0.40 0.27 16 39 H 0.07 0.71 7.62 -51.93 -0.40 0.32 16 40 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.40 0.32 8.83 -40.82 -0.36 -0.04 16 43 H 0.40 1.21 8.93 -40.82 -0.36 0.85 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -36.96 366.50 -7.69 -44.66 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.64 Total: 4.77 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -2.93 Total: 7.84 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.40 Total: -54.55 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.03 Total: -25.12 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.96 -7.69 -44.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085565727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.690 kcal (2) G-P(sol) polarization free energy of solvation -36.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds