Wall clock time and date at job start Tue Mar 31 2020 13:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99748 * 2 1 4 4 C 1.50698 * 109.47167 * 269.99799 * 3 2 1 5 5 H 1.08003 * 120.00125 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00219 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99702 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00216 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46747 * 90.00075 * 8 6 4 10 10 H 1.48498 * 109.47183 * 209.99912 * 8 6 4 11 11 H 1.48500 * 109.47068 * 330.00536 * 8 6 4 12 12 C 1.34774 * 120.00278 * 179.97438 * 2 1 3 13 13 O 1.21588 * 120.00360 * 179.97438 * 12 2 1 14 14 N 1.34776 * 119.99583 * 0.02562 * 12 2 1 15 15 C 1.40169 * 119.99846 * 184.43484 * 14 12 2 16 16 C 1.38714 * 120.08572 * 325.33697 * 15 14 12 17 17 C 1.38200 * 119.98416 * 180.02562 * 16 15 14 18 18 C 1.38274 * 120.16499 * 359.97438 * 17 16 15 19 19 C 1.38251 * 120.17405 * 0.02562 * 18 17 16 20 20 C 1.38541 * 120.01336 * 359.97438 * 19 18 17 21 21 O 1.35989 * 120.08104 * 180.02562 * 20 19 18 22 22 C 1.42898 * 116.99760 * 359.97438 * 21 20 19 23 23 C 1.52999 * 109.46976 * 179.97438 * 22 21 20 24 24 C 1.50699 * 109.47248 * 180.02562 * 23 22 21 25 25 N 1.34780 * 119.99803 * 179.97438 * 24 23 22 26 26 O 1.21282 * 120.00096 * 0.02562 * 24 23 22 27 27 H 1.09002 * 109.46929 * 269.99699 * 1 2 3 28 28 H 1.09002 * 109.47507 * 29.99641 * 1 2 3 29 29 H 1.08995 * 109.46987 * 150.00382 * 1 2 3 30 30 H 1.08998 * 109.47428 * 30.00102 * 3 2 1 31 31 H 1.09007 * 109.46819 * 150.00198 * 3 2 1 32 32 H 0.96998 * 119.99686 * 180.02562 * 7 6 4 33 33 H 0.96998 * 120.00426 * 4.42804 * 14 12 2 34 34 H 1.07994 * 120.00435 * 0.02562 * 16 15 14 35 35 H 1.08005 * 119.91887 * 180.02562 * 17 16 15 36 36 H 1.07999 * 119.91598 * 179.72308 * 18 17 16 37 37 H 1.07995 * 119.99342 * 179.97438 * 19 18 17 38 38 H 1.08995 * 109.47185 * 300.00000 * 22 21 20 39 39 H 1.09005 * 109.46928 * 60.00470 * 22 21 20 40 40 H 1.09003 * 109.47404 * 300.00710 * 23 22 21 41 41 H 1.09002 * 109.47378 * 60.00047 * 23 22 21 42 42 H 0.96991 * 120.00443 * 0.02562 * 25 24 23 43 43 H 0.97007 * 119.99725 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5550 3.6172 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.3077 4.2607 -3.8998 10 1 4.6982 4.1994 -3.4968 11 1 3.5537 2.2202 -4.3052 12 6 2.1389 -1.1671 0.0005 13 8 3.3548 -1.1672 0.0001 14 7 1.4650 -2.3343 0.0005 15 6 2.1627 -3.5464 0.0949 16 6 3.4084 -3.6799 -0.5004 17 6 4.0942 -4.8760 -0.4065 18 6 3.5420 -5.9414 0.2805 19 6 2.3009 -5.8158 0.8764 20 6 1.6070 -4.6200 0.7868 21 8 0.3863 -4.4947 1.3728 22 6 -0.1213 -5.6372 2.0650 23 6 -1.4944 -5.3080 2.6543 24 6 -2.0295 -6.5126 3.3847 25 7 -3.2330 -6.4547 3.9886 26 8 -1.3767 -7.5337 3.4300 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 4.0318 4.4430 -0.8504 33 1 0.4972 -2.3356 -0.0647 34 1 3.8422 -2.8492 -1.0372 35 1 5.0643 -4.9786 -0.8701 36 1 4.0795 -6.8758 0.3476 37 1 1.8721 -6.6499 1.4118 38 1 -0.2145 -6.4714 1.3697 39 1 0.5630 -5.9087 2.8688 40 1 -1.4008 -4.4737 3.3496 41 1 -2.1790 -5.0361 1.8508 42 1 -3.7549 -5.6380 3.9528 43 1 -3.5777 -7.2303 4.4585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085565727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:59 Heat of formation + Delta-G solvation = -97.747592 kcal Electronic energy + Delta-G solvation = -26562.912025 eV Core-core repulsion = 22607.757256 eV Total energy + Delta-G solvation = -3955.154769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85442 -40.81874 -40.26118 -38.38083 -36.67110 -35.79828 -34.69887 -34.60362 -32.86554 -31.13468 -30.36260 -29.28302 -27.33059 -25.92541 -25.17315 -23.25451 -23.00916 -21.37157 -20.84372 -19.71738 -18.89046 -18.62820 -18.19232 -18.10111 -17.43733 -17.39760 -16.80588 -16.75172 -16.32007 -15.91213 -15.83254 -15.47143 -14.96531 -14.82239 -14.63656 -14.54778 -14.19996 -14.01418 -13.81425 -13.46943 -13.18249 -12.98110 -12.92913 -12.78445 -12.57895 -12.51233 -12.19542 -12.08880 -11.73622 -11.72622 -11.37111 -11.15956 -10.88558 -10.66118 -10.61962 -9.64129 -9.42602 -8.75314 -8.19660 -6.34772 0.34312 0.44779 1.37527 1.40801 1.50898 1.59184 1.72322 1.89795 2.19270 2.40889 2.84012 2.90378 3.06888 3.11034 3.66087 3.94146 3.98126 4.05585 4.18387 4.24712 4.31758 4.46413 4.49181 4.57835 4.66171 4.75779 4.76696 4.83734 4.91858 4.98362 5.18321 5.24713 5.34821 5.55667 5.56632 5.66144 5.79208 5.87414 5.88491 6.07793 6.09474 6.39248 6.44723 6.73761 7.07103 7.31639 7.32186 7.65314 8.86551 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.002820 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.259151 B = 9928.117616 C =11257.371550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.620 5.620 3 C 0.276 3.724 4 C -0.541 4.541 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.693 3.307 13 O -0.621 6.621 14 N -0.669 5.669 15 C 0.120 3.880 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.094 4.094 19 C -0.188 4.188 20 C 0.099 3.901 21 O -0.320 6.320 22 C 0.071 3.929 23 C -0.136 4.136 24 C 0.523 3.477 25 N -0.834 5.834 26 O -0.594 6.594 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.031 0.969 31 H -0.001 1.001 32 H 0.267 0.733 33 H 0.417 0.583 34 H 0.115 0.885 35 H 0.141 0.859 36 H 0.158 0.842 37 H 0.153 0.847 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.420 0.580 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.136 -21.004 6.827 27.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.355 5.355 3 C 0.155 3.845 4 C -0.580 4.580 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.395 3.605 13 O -0.501 6.501 14 N -0.320 5.320 15 C 0.025 3.975 16 C -0.133 4.133 17 C -0.159 4.159 18 C -0.113 4.113 19 C -0.207 4.207 20 C 0.051 3.949 21 O -0.234 6.234 22 C -0.005 4.005 23 C -0.176 4.176 24 C 0.309 3.691 25 N -0.398 5.398 26 O -0.475 6.475 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.257 0.743 34 H 0.133 0.867 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.252 0.748 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -14.867 -21.093 6.835 26.696 hybrid contribution -0.243 0.690 -0.543 0.911 sum -15.110 -20.403 6.293 26.157 Atomic orbital electron populations 1.21870 0.77979 1.03740 1.02618 1.47351 1.07963 1.04786 1.75407 1.18709 0.90921 0.78867 0.96047 1.21698 1.36791 1.06452 0.93037 0.93062 1.25834 0.94898 0.96432 1.01905 1.70049 1.38956 1.14817 1.32952 0.85417 0.78106 0.78117 0.79156 1.18693 1.20637 1.20030 1.16087 0.85089 0.81085 0.78216 1.90834 1.13751 1.86435 1.59072 1.42388 1.10478 1.02123 1.77056 1.17085 0.94794 0.84520 1.01130 1.21234 0.94317 0.98660 0.99073 1.21213 1.01015 0.92164 1.01499 1.21263 0.94659 0.99415 0.95959 1.21355 0.97320 0.96600 1.05450 1.18629 0.86859 0.94134 0.95253 1.85905 1.30537 1.39852 1.67125 1.22510 0.95217 0.86742 0.95984 1.21450 0.96024 0.97418 1.02668 1.20525 0.81664 0.88725 0.78209 1.43686 1.19573 1.20306 1.56259 1.90770 1.59573 1.34540 1.62623 0.90977 0.90579 0.90002 0.95141 0.98278 0.92383 0.74328 0.86742 0.84089 0.82427 0.82912 0.91088 0.91875 0.85887 0.85166 0.74794 0.75933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.42 10.24 127.77 1.31 3.73 16 2 N -0.62 -27.42 2.86 -869.31 -2.48 -29.90 16 3 C 0.28 15.16 5.16 85.63 0.44 15.60 16 4 C -0.54 -31.58 9.39 25.60 0.24 -31.34 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.48 5.46 84.65 0.46 0.94 16 7 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 8 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 9 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 C 0.69 31.52 8.13 179.06 1.46 32.97 16 13 O -0.62 -34.13 13.34 -3.99 -0.05 -34.18 16 14 N -0.67 -23.46 5.07 -316.80 -1.61 -25.06 16 15 C 0.12 4.09 6.32 38.17 0.24 4.33 16 16 C -0.11 -4.02 8.70 22.37 0.19 -3.83 16 17 C -0.14 -3.88 10.04 22.27 0.22 -3.66 16 18 C -0.09 -2.11 10.04 22.28 0.22 -1.89 16 19 C -0.19 -4.34 9.04 22.35 0.20 -4.13 16 20 C 0.10 2.70 6.70 22.59 0.15 2.85 16 21 O -0.32 -7.21 9.70 -93.43 -0.91 -8.12 16 22 C 0.07 1.20 4.03 71.98 0.29 1.49 16 23 C -0.14 -1.35 6.07 29.85 0.18 -1.17 16 24 C 0.52 6.67 8.10 87.66 0.71 7.38 16 25 N -0.83 -3.91 8.87 -173.53 -1.54 -5.45 16 26 O -0.59 -13.40 16.82 -3.03 -0.05 -13.46 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 29 H 0.08 1.93 6.30 -2.39 -0.02 1.91 16 30 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 31 H 0.00 -0.06 7.42 -2.38 -0.02 -0.08 16 32 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.42 11.62 6.26 -92.71 -0.58 11.04 16 34 H 0.11 4.96 6.19 -2.91 -0.02 4.94 16 35 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 36 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.15 2.78 6.30 -2.91 -0.02 2.76 16 38 H 0.07 1.20 7.62 -2.39 -0.02 1.18 16 39 H 0.06 1.17 7.62 -2.38 -0.02 1.15 16 40 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.42 -0.71 8.83 -92.71 -0.82 -1.53 16 43 H 0.41 1.52 8.93 -92.70 -0.83 0.69 16 Total: -1.00 -85.14 366.50 0.85 -84.29 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -1.15 Total: 17.38 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 6.33 Total: 23.28 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -5.34 Total: -116.58 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -1.01 Total: -55.75 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -85.14 0.85 -84.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085565727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.460 kcal (2) G-P(sol) polarization free energy of solvation -85.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds