Wall clock time and date at job start Tue Mar 31 2020 13:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 119.99703 * 2 1 4 4 O 1.21276 * 120.00551 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99582 * 180.02562 * 3 2 1 6 6 O 1.42908 * 109.46973 * 180.02562 * 5 3 2 7 7 C 1.35971 * 117.00106 * 180.02562 * 6 5 3 8 8 C 1.38715 * 119.98714 * 0.24986 * 7 6 5 9 9 C 1.38100 * 120.01889 * 180.25601 * 8 7 6 10 10 C 1.38830 * 119.98072 * 359.49313 * 9 8 7 11 11 N 1.40150 * 120.01435 * 180.27664 * 10 9 8 12 12 C 1.34781 * 119.99935 * 144.90773 * 11 10 9 13 13 O 1.21592 * 119.99999 * 4.58600 * 12 11 10 14 14 N 1.34778 * 119.99918 * 184.58721 * 12 11 10 15 15 C 1.46504 * 120.00053 * 0.02562 * 14 12 11 16 16 C 1.46495 * 120.00097 * 179.97438 * 14 12 11 17 17 C 1.50707 * 109.46872 * 90.00262 * 16 14 12 18 18 H 1.08001 * 119.99891 * 359.97438 * 17 16 14 19 19 C 1.37879 * 119.99804 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99291 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00226 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47132 * 90.00011 * 21 19 17 23 23 H 1.48501 * 109.46907 * 210.00233 * 21 19 17 24 24 H 1.48502 * 109.47021 * 329.99755 * 21 19 17 25 25 C 1.38838 * 119.97278 * 0.25290 * 10 9 8 26 26 C 1.38095 * 119.98815 * 0.02562 * 25 10 9 27 27 H 1.09005 * 109.47198 * 59.99730 * 1 2 3 28 28 H 1.09005 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47390 * 300.00122 * 1 2 3 30 30 H 0.96996 * 120.00042 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47275 * 60.00257 * 5 3 2 32 32 H 1.09000 * 109.46978 * 299.99803 * 5 3 2 33 33 H 1.08002 * 119.99294 * 0.02562 * 8 7 6 34 34 H 1.07994 * 120.01135 * 179.77433 * 9 8 7 35 35 H 0.96996 * 120.00114 * 324.90624 * 11 10 9 36 36 H 1.08997 * 109.47108 * 89.99450 * 15 14 12 37 37 H 1.08998 * 109.46777 * 210.00115 * 15 14 12 38 38 H 1.09002 * 109.46743 * 329.99620 * 15 14 12 39 39 H 1.08998 * 109.47303 * 209.99904 * 16 14 12 40 40 H 1.09002 * 109.47408 * 330.00206 * 16 14 12 41 41 H 0.97001 * 119.99355 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.00508 * 180.02562 * 25 10 9 43 43 H 1.07994 * 119.99561 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6458 1.1672 -0.0006 6 8 4.1222 2.5146 0.0001 7 6 5.4701 2.6928 -0.0008 8 6 6.3149 1.5925 -0.0076 9 6 7.6841 1.7727 -0.0033 10 6 8.2150 3.0555 -0.0027 11 7 9.6044 3.2392 -0.0041 12 6 10.1466 4.2750 -0.6748 13 8 9.4270 5.0970 -1.2087 14 7 11.4863 4.3995 -0.7536 15 6 12.3532 3.4088 -0.1108 16 6 12.0756 5.5250 -1.4831 17 6 12.2759 6.6843 -0.5412 18 1 11.9922 6.5921 0.4968 19 6 12.8205 7.8631 -1.0050 20 7 12.9948 8.8749 -0.1831 21 14 13.3105 8.0230 -2.8004 22 1 12.1584 8.5363 -3.5841 23 1 14.4506 8.9668 -2.9201 24 1 13.7121 6.6927 -3.3242 25 6 7.3690 4.1563 -0.0012 26 6 6.0000 3.9748 0.0003 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9499 -0.8400 -0.0004 31 1 4.0088 0.6537 -0.8908 32 1 4.0095 0.6532 0.8892 33 1 5.9018 0.5947 -0.0126 34 1 8.3417 0.9161 -0.0049 35 1 10.1759 2.6209 0.4776 36 1 12.5693 2.6045 -0.8139 37 1 13.2850 3.8850 0.1943 38 1 11.8501 3.0000 0.7655 39 1 13.0372 5.2247 -1.8993 40 1 11.4076 5.8243 -2.2908 41 1 13.3782 9.7041 -0.5092 42 1 7.7815 5.1545 -0.0011 43 1 5.3418 4.8309 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085585261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:26 Heat of formation + Delta-G solvation = -49.543758 kcal Electronic energy + Delta-G solvation = -25868.493082 eV Core-core repulsion = 21915.428588 eV Total energy + Delta-G solvation = -3953.064494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.67981 -40.09859 -39.21589 -37.34695 -35.08269 -34.99387 -34.10070 -32.45080 -31.12424 -30.02011 -28.89810 -27.84657 -26.30618 -25.84751 -23.08298 -22.89099 -21.58042 -21.00111 -19.47472 -18.48771 -17.98981 -17.66448 -16.96108 -16.87614 -16.70145 -16.21817 -15.49884 -15.10128 -15.00812 -14.88738 -14.35463 -14.09374 -13.83333 -13.52353 -13.38828 -13.28042 -13.01425 -12.81483 -12.74304 -12.55686 -12.44686 -12.34182 -12.07492 -11.51319 -11.40493 -10.97272 -10.95134 -10.52595 -10.26653 -10.17840 -9.72739 -9.65951 -9.57922 -9.34345 -8.88582 -8.58359 -7.88110 -7.48420 -6.08209 -4.07166 1.39285 1.45855 2.14424 2.24231 3.09457 3.30535 3.36271 3.38567 3.42154 3.61525 3.99768 4.18974 4.36968 4.40545 4.55030 4.64668 4.72346 4.82440 4.86168 5.02926 5.24136 5.30913 5.32683 5.41303 5.46331 5.71212 5.74869 5.81967 5.96849 6.00873 6.06421 6.27609 6.39937 6.62524 6.68622 6.86183 6.87901 7.06691 7.22697 7.36472 7.46681 7.61750 7.72499 8.43294 8.47632 8.94630 9.12892 9.51846 11.05147 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.002117 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.118341 B =13220.087467 C =13763.429813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.735 5.735 3 C 0.513 3.487 4 O -0.512 6.512 5 C 0.043 3.957 6 O -0.292 6.292 7 C 0.099 3.901 8 C -0.192 4.192 9 C -0.116 4.116 10 C 0.145 3.855 11 N -0.694 5.694 12 C 0.700 3.300 13 O -0.568 6.568 14 N -0.608 5.608 15 C 0.084 3.916 16 C 0.230 3.770 17 C -0.530 4.530 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.078 4.078 26 C -0.124 4.124 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.403 0.597 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.402 0.598 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.155 0.845 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.541 -25.307 1.800 30.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.390 5.390 3 C 0.298 3.702 4 O -0.385 6.385 5 C -0.036 4.036 6 O -0.205 6.205 7 C 0.054 3.946 8 C -0.211 4.211 9 C -0.138 4.138 10 C 0.050 3.950 11 N -0.345 5.345 12 C 0.402 3.598 13 O -0.445 6.445 14 N -0.343 5.343 15 C -0.060 4.060 16 C 0.109 3.891 17 C -0.569 4.569 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.099 4.099 26 C -0.143 4.143 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.237 0.763 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.238 0.762 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.172 0.828 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.477 -23.518 1.371 29.333 hybrid contribution 1.009 -0.863 -0.550 1.437 sum -16.469 -24.381 0.820 29.433 Atomic orbital electron populations 1.21566 0.78780 1.02455 1.02692 1.45616 1.08046 1.08276 1.77018 1.20204 0.89159 0.84138 0.76713 1.90778 1.69879 1.31052 1.46805 1.22355 0.92123 0.85370 1.03777 1.86161 1.19568 1.25314 1.89467 1.18939 0.81240 0.94442 1.00005 1.20850 0.93526 0.97477 1.09286 1.20588 0.94605 0.95428 1.03140 1.17502 0.82632 0.93249 1.01636 1.42875 1.05114 1.31595 1.54883 1.15870 0.82943 0.81298 0.79684 1.90888 1.59494 1.42560 1.51509 1.47126 1.02807 1.28243 1.56120 1.21617 0.96356 0.91930 0.96121 1.19622 0.92989 0.83770 0.92674 1.21352 1.41724 0.96275 0.97559 0.90755 1.24855 0.95164 0.95425 0.97584 1.69901 1.44672 1.03789 1.35148 0.86845 0.78622 0.78437 0.85724 1.19845 1.21090 1.19085 1.21376 0.91354 1.00398 0.96744 1.20384 0.94799 0.94732 1.04387 0.91987 0.90339 0.91980 0.76307 0.89032 0.89035 0.85603 0.85648 0.76164 0.93551 0.90051 0.92843 0.95014 0.94332 0.92552 0.82798 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 10.70 59.84 0.64 1.05 16 2 N -0.74 -3.83 5.71 -67.08 -0.38 -4.22 16 3 C 0.51 4.85 7.91 -10.98 -0.09 4.77 16 4 O -0.51 -7.53 16.50 -14.35 -0.24 -7.77 16 5 C 0.04 0.34 5.22 36.01 0.19 0.53 16 6 O -0.29 -3.78 9.67 -39.56 -0.38 -4.16 16 7 C 0.10 1.30 6.69 -39.23 -0.26 1.04 16 8 C -0.19 -2.06 9.03 -39.46 -0.36 -2.41 16 9 C -0.12 -1.36 9.96 -39.41 -0.39 -1.75 16 10 C 0.15 2.21 6.30 -83.61 -0.53 1.68 16 11 N -0.69 -10.86 5.22 -14.19 -0.07 -10.93 16 12 C 0.70 14.47 8.12 -86.91 -0.71 13.76 16 13 O -0.57 -14.05 13.36 5.28 0.07 -13.98 16 14 N -0.61 -12.38 2.86 -188.74 -0.54 -12.92 16 15 C 0.08 1.22 10.24 59.85 0.61 1.83 16 16 C 0.23 5.59 4.23 -5.19 -0.02 5.57 16 17 C -0.53 -15.18 9.94 -34.44 -0.34 -15.52 16 18 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 21 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 25 C -0.08 -1.32 8.69 -39.41 -0.34 -1.66 16 26 C -0.12 -1.85 9.98 -39.46 -0.39 -2.25 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.40 0.62 8.83 -40.82 -0.36 0.26 16 31 H 0.09 0.50 7.65 -51.93 -0.40 0.10 16 32 H 0.09 0.48 7.67 -51.93 -0.40 0.08 16 33 H 0.13 0.88 6.29 -52.49 -0.33 0.55 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.40 4.84 6.52 -40.82 -0.27 4.57 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 38 H 0.05 0.62 6.30 -51.93 -0.33 0.29 16 39 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 40 H 0.04 1.00 6.85 -51.93 -0.36 0.65 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 42 H 0.15 3.03 6.22 -52.48 -0.33 2.70 16 43 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -39.34 364.56 -7.71 -47.05 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.68 Total: 2.82 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -2.09 Total: 8.64 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.22 Total: -54.96 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.55 Total: -25.91 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.34 -7.71 -47.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085585261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.496 kcal (2) G-P(sol) polarization free energy of solvation -39.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds