Wall clock time and date at job start Tue Mar 31 2020 13:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 119.99703 * 2 1 4 4 O 1.21276 * 120.00551 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99582 * 180.02562 * 3 2 1 6 6 O 1.42908 * 109.46973 * 180.02562 * 5 3 2 7 7 C 1.35971 * 117.00106 * 180.02562 * 6 5 3 8 8 C 1.38715 * 119.98714 * 0.24986 * 7 6 5 9 9 C 1.38100 * 120.01889 * 180.25601 * 8 7 6 10 10 C 1.38830 * 119.98072 * 359.49313 * 9 8 7 11 11 N 1.40150 * 120.01435 * 180.27664 * 10 9 8 12 12 C 1.34781 * 119.99935 * 144.90773 * 11 10 9 13 13 O 1.21592 * 119.99999 * 4.58600 * 12 11 10 14 14 N 1.34778 * 119.99918 * 184.58721 * 12 11 10 15 15 C 1.46504 * 120.00053 * 0.02562 * 14 12 11 16 16 C 1.46495 * 120.00097 * 179.97438 * 14 12 11 17 17 C 1.50707 * 109.46872 * 90.00262 * 16 14 12 18 18 H 1.08001 * 119.99891 * 359.97438 * 17 16 14 19 19 C 1.37879 * 119.99804 * 180.02562 * 17 16 14 20 20 N 1.31518 * 119.99291 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00226 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47132 * 90.00011 * 21 19 17 23 23 H 1.48501 * 109.46907 * 210.00233 * 21 19 17 24 24 H 1.48502 * 109.47021 * 329.99755 * 21 19 17 25 25 C 1.38838 * 119.97278 * 0.25290 * 10 9 8 26 26 C 1.38095 * 119.98815 * 0.02562 * 25 10 9 27 27 H 1.09005 * 109.47198 * 59.99730 * 1 2 3 28 28 H 1.09005 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47390 * 300.00122 * 1 2 3 30 30 H 0.96996 * 120.00042 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47275 * 60.00257 * 5 3 2 32 32 H 1.09000 * 109.46978 * 299.99803 * 5 3 2 33 33 H 1.08002 * 119.99294 * 0.02562 * 8 7 6 34 34 H 1.07994 * 120.01135 * 179.77433 * 9 8 7 35 35 H 0.96996 * 120.00114 * 324.90624 * 11 10 9 36 36 H 1.08997 * 109.47108 * 89.99450 * 15 14 12 37 37 H 1.08998 * 109.46777 * 210.00115 * 15 14 12 38 38 H 1.09002 * 109.46743 * 329.99620 * 15 14 12 39 39 H 1.08998 * 109.47303 * 209.99904 * 16 14 12 40 40 H 1.09002 * 109.47408 * 330.00206 * 16 14 12 41 41 H 0.97001 * 119.99355 * 179.97438 * 20 19 17 42 42 H 1.08004 * 120.00508 * 180.02562 * 25 10 9 43 43 H 1.07994 * 119.99561 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6458 1.1672 -0.0006 6 8 4.1222 2.5146 0.0001 7 6 5.4701 2.6928 -0.0008 8 6 6.3149 1.5925 -0.0076 9 6 7.6841 1.7727 -0.0033 10 6 8.2150 3.0555 -0.0027 11 7 9.6044 3.2392 -0.0041 12 6 10.1466 4.2750 -0.6748 13 8 9.4270 5.0970 -1.2087 14 7 11.4863 4.3995 -0.7536 15 6 12.3532 3.4088 -0.1108 16 6 12.0756 5.5250 -1.4831 17 6 12.2759 6.6843 -0.5412 18 1 11.9922 6.5921 0.4968 19 6 12.8205 7.8631 -1.0050 20 7 12.9948 8.8749 -0.1831 21 14 13.3105 8.0230 -2.8004 22 1 12.1584 8.5363 -3.5841 23 1 14.4506 8.9668 -2.9201 24 1 13.7121 6.6927 -3.3242 25 6 7.3690 4.1563 -0.0012 26 6 6.0000 3.9748 0.0003 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.9499 -0.8400 -0.0004 31 1 4.0088 0.6537 -0.8908 32 1 4.0095 0.6532 0.8892 33 1 5.9018 0.5947 -0.0126 34 1 8.3417 0.9161 -0.0049 35 1 10.1759 2.6209 0.4776 36 1 12.5693 2.6045 -0.8139 37 1 13.2850 3.8850 0.1943 38 1 11.8501 3.0000 0.7655 39 1 13.0372 5.2247 -1.8993 40 1 11.4076 5.8243 -2.2908 41 1 13.3782 9.7041 -0.5092 42 1 7.7815 5.1545 -0.0011 43 1 5.3418 4.8309 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085585261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:25 Heat of formation + Delta-G solvation = -80.485777 kcal Electronic energy + Delta-G solvation = -25869.834828 eV Core-core repulsion = 21915.428588 eV Total energy + Delta-G solvation = -3954.406240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78341 -41.16094 -40.20837 -38.45287 -36.64990 -35.70437 -35.49036 -34.52864 -32.11415 -30.98734 -30.38033 -29.06893 -27.36975 -26.77295 -24.74754 -23.98032 -22.86392 -21.74151 -20.87658 -19.44492 -19.18690 -19.13402 -18.53010 -18.13581 -17.39064 -16.99226 -16.73385 -16.62266 -16.25696 -15.77251 -15.70599 -15.33787 -15.08618 -14.79992 -14.51738 -14.38420 -14.09580 -13.95787 -13.90502 -13.66294 -13.60570 -13.39652 -13.20111 -13.09421 -12.78830 -12.42892 -12.34202 -12.01964 -11.95778 -11.74001 -11.13106 -11.03830 -10.83362 -10.79005 -10.21289 -9.96407 -9.47216 -8.64479 -8.32951 -6.38102 0.36166 0.37971 1.33535 1.39054 1.46580 1.47343 1.59568 1.74161 2.16752 2.32249 2.73122 2.83973 3.00789 3.06891 3.64377 3.89341 3.98603 4.10797 4.17445 4.26365 4.32525 4.43194 4.47552 4.61434 4.61465 4.65821 4.73385 4.86366 4.90569 4.95828 4.96502 5.07379 5.27655 5.34228 5.37419 5.45898 5.53964 5.58819 5.89505 6.02904 6.27556 6.35558 6.53816 6.63228 7.03356 7.17696 7.23750 7.61601 8.84100 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.002117 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.118341 B =13220.087467 C =13763.429813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.713 5.713 3 C 0.506 3.494 4 O -0.579 6.579 5 C 0.034 3.966 6 O -0.322 6.322 7 C 0.105 3.895 8 C -0.173 4.173 9 C -0.093 4.093 10 C 0.117 3.883 11 N -0.672 5.672 12 C 0.692 3.308 13 O -0.622 6.622 14 N -0.618 5.618 15 C 0.077 3.923 16 C 0.240 3.760 17 C -0.537 4.537 18 H 0.026 0.974 19 C 0.009 3.991 20 N -0.946 5.946 21 Si 0.950 3.050 22 H -0.279 1.279 23 H -0.275 1.275 24 H -0.233 1.233 25 C -0.105 4.105 26 C -0.148 4.148 27 H 0.047 0.953 28 H 0.118 0.882 29 H 0.048 0.952 30 H 0.425 0.575 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.180 0.820 34 H 0.170 0.830 35 H 0.421 0.579 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.268 0.732 42 H 0.107 0.893 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 -30.933 0.803 34.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.367 5.367 3 C 0.293 3.707 4 O -0.458 6.458 5 C -0.043 4.043 6 O -0.236 6.236 7 C 0.059 3.941 8 C -0.192 4.192 9 C -0.113 4.113 10 C 0.022 3.978 11 N -0.324 5.324 12 C 0.393 3.607 13 O -0.502 6.502 14 N -0.352 5.352 15 C -0.065 4.065 16 C 0.117 3.883 17 C -0.576 4.576 18 H 0.045 0.955 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.772 3.228 22 H -0.205 1.205 23 H -0.200 1.200 24 H -0.156 1.156 25 C -0.126 4.126 26 C -0.168 4.168 27 H 0.065 0.935 28 H 0.137 0.863 29 H 0.066 0.934 30 H 0.263 0.737 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.198 0.802 34 H 0.188 0.812 35 H 0.261 0.739 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.077 0.923 42 H 0.126 0.874 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.111 -29.304 0.423 33.937 hybrid contribution 0.698 0.759 -0.108 1.037 sum -16.413 -28.545 0.315 32.929 Atomic orbital electron populations 1.21705 0.78375 1.04617 1.01344 1.45505 1.08401 1.08111 1.74715 1.20672 0.90063 0.84197 0.75811 1.90760 1.71195 1.33544 1.50342 1.22792 0.90873 0.83473 1.07170 1.86130 1.19267 1.28880 1.89321 1.18936 0.81987 0.94183 0.98954 1.21381 0.92680 0.98864 1.06263 1.21010 0.95612 0.94667 1.00007 1.17750 0.81893 0.94377 1.03760 1.42502 1.05691 1.30376 1.53865 1.16148 0.82831 0.81875 0.79797 1.90860 1.60805 1.44760 1.53776 1.47104 1.03474 1.28291 1.56335 1.21954 0.95292 0.91358 0.97935 1.19280 0.93730 0.83825 0.91460 1.21604 1.41182 0.98475 0.96300 0.95543 1.25882 0.95144 0.94843 1.03043 1.70063 1.46142 1.04640 1.37820 0.85690 0.78111 0.80106 0.78857 1.20512 1.20025 1.15609 1.21038 0.92605 0.99312 0.99636 1.20291 0.94059 0.96167 1.06246 0.93458 0.86326 0.93364 0.73682 0.85490 0.85195 0.80240 0.81227 0.73852 0.89809 0.90929 0.89894 0.92418 0.96285 0.92322 0.87449 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.70 127.77 1.37 1.98 16 2 N -0.71 -5.33 5.71 -484.52 -2.77 -8.10 16 3 C 0.51 8.66 7.91 87.66 0.69 9.36 16 4 O -0.58 -17.41 16.50 16.02 0.26 -17.14 16 5 C 0.03 0.41 5.22 71.24 0.37 0.79 16 6 O -0.32 -7.88 9.67 -74.19 -0.72 -8.60 16 7 C 0.10 2.59 6.69 22.50 0.15 2.74 16 8 C -0.17 -2.85 9.03 22.35 0.20 -2.65 16 9 C -0.09 -1.74 9.96 22.38 0.22 -1.52 16 10 C 0.12 3.45 6.30 38.10 0.24 3.69 16 11 N -0.67 -20.35 5.22 -317.05 -1.66 -22.00 16 12 C 0.69 29.17 8.12 179.05 1.45 30.63 16 13 O -0.62 -32.71 13.36 -4.01 -0.05 -32.77 16 14 N -0.62 -25.02 2.86 -869.29 -2.48 -27.51 16 15 C 0.08 2.05 10.24 127.77 1.31 3.35 16 16 C 0.24 11.71 4.23 85.64 0.36 12.07 16 17 C -0.54 -31.99 9.94 25.60 0.25 -31.73 16 18 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 19 C 0.01 0.52 5.47 84.65 0.46 0.98 16 20 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 21 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.23 -9.71 6.54 99.48 0.65 -9.06 16 25 C -0.11 -3.79 8.69 22.38 0.19 -3.60 16 26 C -0.15 -4.73 9.98 22.35 0.22 -4.51 16 27 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.12 -0.09 8.14 -2.38 -0.02 -0.11 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.43 -0.65 8.83 -92.71 -0.82 -1.46 16 31 H 0.13 0.65 7.65 -2.39 -0.02 0.63 16 32 H 0.13 0.58 7.67 -2.39 -0.02 0.56 16 33 H 0.18 1.04 6.29 -2.91 -0.02 1.02 16 34 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.42 8.91 6.52 -92.71 -0.60 8.30 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 37 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 38 H 0.08 1.68 6.30 -2.39 -0.02 1.67 16 39 H 0.06 2.52 7.13 -2.39 -0.02 2.51 16 40 H 0.02 1.01 6.85 -2.39 -0.02 0.99 16 41 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 42 H 0.11 4.82 6.22 -2.91 -0.02 4.80 16 43 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -97.45 364.56 1.86 -95.59 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -0.42 Total: 12.66 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 7.51 Total: 21.58 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -6.61 Total: -118.08 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: -0.51 Total: -58.51 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -97.45 1.86 -95.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085585261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.107 kcal (2) G-P(sol) polarization free energy of solvation -97.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds