Wall clock time and date at job start Tue Mar 31 2020 13:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 119.99849 * 2 1 4 4 C 1.50707 * 109.46872 * 269.99687 * 3 2 1 5 5 H 1.08001 * 119.99891 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99804 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99291 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00226 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47132 * 90.00011 * 8 6 4 10 10 H 1.48501 * 109.46907 * 210.00233 * 8 6 4 11 11 H 1.48502 * 109.47021 * 329.99755 * 8 6 4 12 12 C 1.34778 * 120.00053 * 179.97438 * 2 1 3 13 13 O 1.21592 * 120.00083 * 180.02562 * 12 2 1 14 14 N 1.34781 * 119.99918 * 0.02562 * 12 2 1 15 15 C 1.40150 * 119.99935 * 184.58721 * 14 12 2 16 16 C 1.38830 * 120.01435 * 144.90773 * 15 14 12 17 17 C 1.38100 * 119.98072 * 180.27664 * 16 15 14 18 18 C 1.38715 * 120.01889 * 359.49313 * 17 16 15 19 19 O 1.35971 * 119.98714 * 180.25601 * 18 17 16 20 20 C 1.42908 * 117.00106 * 0.24986 * 19 18 17 21 21 C 1.53002 * 109.47074 * 179.97438 * 20 19 18 22 22 C 1.50699 * 109.47100 * 179.97438 * 21 20 19 23 23 N 1.34776 * 120.00024 * 179.97438 * 22 21 20 24 24 O 1.21288 * 119.99520 * 0.02562 * 22 21 20 25 25 C 1.38718 * 120.02575 * 0.50779 * 18 17 16 26 26 C 1.38095 * 120.01177 * 359.74672 * 25 18 17 27 27 H 1.08997 * 109.47108 * 270.00025 * 1 2 3 28 28 H 1.08998 * 109.46777 * 30.00689 * 1 2 3 29 29 H 1.09002 * 109.46743 * 150.00195 * 1 2 3 30 30 H 1.08998 * 109.47303 * 29.99329 * 3 2 1 31 31 H 1.09002 * 109.47408 * 149.99632 * 3 2 1 32 32 H 0.97001 * 119.99355 * 179.97438 * 7 6 4 33 33 H 0.96996 * 119.99952 * 4.58870 * 14 12 2 34 34 H 1.07994 * 120.00733 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.98777 * 179.72353 * 17 16 15 36 36 H 1.08993 * 109.47160 * 300.00153 * 20 19 18 37 37 H 1.09000 * 109.46858 * 60.00463 * 20 19 18 38 38 H 1.09001 * 109.47166 * 299.99854 * 21 20 19 39 39 H 1.09005 * 109.47069 * 60.00141 * 21 20 19 40 40 H 0.96998 * 119.99983 * 0.02562 * 23 22 21 41 41 H 0.97001 * 119.99991 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.99262 * 179.73093 * 25 18 17 43 43 H 1.08004 * 120.00677 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2418 6 6 3.1269 2.8774 -1.6729 7 7 3.3465 3.2566 -2.9129 8 14 3.7338 3.9287 -0.2531 9 1 5.1069 3.5069 0.1236 10 1 3.7496 5.3553 -0.6652 11 1 2.8271 3.7597 0.9108 12 6 2.1389 -1.1672 0.0005 13 8 3.3549 -1.1672 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1624 -3.5462 0.0981 16 6 1.6093 -4.6115 0.7958 17 6 2.2996 -5.8033 0.8964 18 6 3.5406 -5.9398 0.2917 19 8 4.2173 -7.1152 0.3868 20 6 3.5884 -8.1686 1.1197 21 6 4.4929 -9.4026 1.1169 22 6 3.8300 -10.5131 1.8903 23 7 4.4467 -11.7042 2.0217 24 8 2.7409 -10.3352 2.3938 25 6 4.0937 -4.8757 -0.4055 26 6 3.4068 -3.6816 -0.5024 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5137 31 1 3.1499 1.1385 0.5139 32 1 3.8233 4.0825 -3.0901 33 1 0.4974 -2.3358 -0.0671 34 1 0.6418 -4.5065 1.2638 35 1 1.8715 -6.6306 1.4429 36 1 3.4176 -7.8451 2.1464 37 1 2.6348 -8.4165 0.6534 38 1 4.6633 -9.7259 0.0900 39 1 5.4468 -9.1549 1.5829 40 1 5.3175 -11.8466 1.6188 41 1 4.0198 -12.4192 2.5193 42 1 5.0618 -4.9811 -0.8724 43 1 3.8377 -2.8531 -1.0450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085587937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:03 Heat of formation + Delta-G solvation = -65.228965 kcal Electronic energy + Delta-G solvation = -25786.412666 eV Core-core repulsion = 21832.668011 eV Total energy + Delta-G solvation = -3953.744655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.52266 -40.04781 -39.36911 -37.41284 -34.99754 -34.24876 -34.11898 -32.49590 -32.07748 -30.83871 -28.97051 -27.82883 -25.90942 -25.11091 -22.92430 -22.64046 -21.42298 -20.82774 -19.37759 -18.51062 -17.89782 -17.65338 -17.02541 -16.95281 -16.72206 -16.68606 -15.65148 -15.14608 -14.98542 -14.88458 -14.39453 -14.00200 -13.92865 -13.52692 -13.45541 -13.29143 -13.12098 -12.72258 -12.59532 -12.35343 -12.17331 -12.01381 -11.93322 -11.47721 -11.11934 -10.93610 -10.79276 -10.56425 -10.51663 -10.25382 -10.16605 -9.65600 -9.56321 -9.30728 -8.82313 -8.57710 -7.84608 -7.42697 -6.07608 -4.06373 1.46000 1.53824 2.09028 2.61037 3.14181 3.31141 3.36983 3.39057 3.46854 3.66237 4.05132 4.21266 4.39544 4.41973 4.52177 4.64533 4.87701 4.93294 5.05704 5.23995 5.25446 5.30874 5.43204 5.45544 5.54243 5.76377 5.80138 6.04121 6.08116 6.13413 6.20653 6.37206 6.44051 6.66375 6.73095 6.73327 6.89542 7.12106 7.25285 7.44499 7.49611 7.63039 7.69527 8.46335 8.48681 8.95421 9.15833 9.52636 11.05768 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.030820 B = 0.002059 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.274289 B =13592.573773 C =14046.635272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.608 5.608 3 C 0.230 3.770 4 C -0.530 4.530 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.701 3.299 13 O -0.569 6.569 14 N -0.694 5.694 15 C 0.144 3.856 16 C -0.116 4.116 17 C -0.189 4.189 18 C 0.102 3.898 19 O -0.320 6.320 20 C 0.074 3.926 21 C -0.143 4.143 22 C 0.524 3.476 23 N -0.855 5.855 24 O -0.542 6.542 25 C -0.129 4.129 26 C -0.081 4.081 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.404 0.596 41 H 0.404 0.596 42 H 0.132 0.868 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 -27.036 8.987 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.343 5.343 3 C 0.109 3.891 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.403 3.597 13 O -0.446 6.446 14 N -0.345 5.345 15 C 0.048 3.952 16 C -0.137 4.137 17 C -0.208 4.208 18 C 0.057 3.943 19 O -0.234 6.234 20 C -0.002 4.002 21 C -0.183 4.183 22 C 0.308 3.692 23 N -0.418 5.418 24 O -0.419 6.419 25 C -0.148 4.148 26 C -0.101 4.101 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.238 0.762 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.232 0.768 41 H 0.234 0.766 42 H 0.150 0.850 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.093 -26.491 9.064 28.020 hybrid contribution -0.131 0.184 0.655 0.693 sum -1.224 -26.307 9.719 28.071 Atomic orbital electron populations 1.21617 0.81167 1.02799 1.00448 1.47121 1.05813 1.05728 1.75670 1.19618 0.92294 0.78793 0.98358 1.21359 1.36998 1.07141 0.91340 0.90755 1.24854 0.95237 0.97354 0.95594 1.69903 1.41461 1.23561 1.18642 0.86844 0.80185 0.79713 0.82880 1.19864 1.21101 1.19075 1.15863 0.85507 0.80061 0.78313 1.90878 1.11355 1.85533 1.56808 1.42870 1.09918 1.03525 1.78144 1.17495 0.94056 0.85389 0.98255 1.20621 1.00941 0.92814 0.99337 1.20954 0.95544 0.99104 1.05183 1.18849 0.91574 0.85652 0.98198 1.85951 1.45930 1.20181 1.71356 1.22319 0.95599 0.85353 0.96882 1.21470 1.00927 0.93129 1.02746 1.20373 0.85314 0.83697 0.79783 1.43827 1.24344 1.14982 1.58691 1.90794 1.20854 1.81884 1.48352 1.20346 1.01345 0.90951 1.02199 1.21342 0.94073 0.97037 0.97645 0.93544 0.90066 0.92829 0.95022 0.94337 0.92574 0.76181 0.85720 0.85333 0.91229 0.91232 0.87459 0.87461 0.76777 0.76551 0.85047 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 10.24 59.85 0.61 1.87 16 2 N -0.61 -12.60 2.86 -188.74 -0.54 -13.14 16 3 C 0.23 5.64 4.23 -5.19 -0.02 5.61 16 4 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 5 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 8 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 9 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 12 C 0.70 14.74 8.12 -86.91 -0.71 14.03 16 13 O -0.57 -14.20 13.36 5.28 0.07 -14.12 16 14 N -0.69 -11.28 5.22 -14.19 -0.07 -11.35 16 15 C 0.14 2.28 6.30 -83.61 -0.53 1.75 16 16 C -0.12 -1.51 9.96 -39.41 -0.39 -1.90 16 17 C -0.19 -2.34 9.03 -39.46 -0.36 -2.70 16 18 C 0.10 1.37 6.69 -39.23 -0.26 1.10 16 19 O -0.32 -3.71 10.14 -19.65 -0.20 -3.91 16 20 C 0.07 0.67 4.03 37.16 0.15 0.82 16 21 C -0.14 -0.82 6.07 -27.88 -0.17 -0.99 16 22 C 0.52 3.63 8.10 -10.99 -0.09 3.54 16 23 N -0.85 -2.60 8.87 31.22 0.28 -2.33 16 24 O -0.54 -6.23 16.82 5.55 0.09 -6.14 16 25 C -0.13 -1.89 9.98 -39.46 -0.39 -2.28 16 26 C -0.08 -1.37 8.69 -39.41 -0.34 -1.71 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.05 0.65 6.30 -51.93 -0.33 0.32 16 30 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 31 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.40 5.12 6.52 -40.82 -0.27 4.85 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.34 6.29 -52.49 -0.33 1.01 16 36 H 0.07 0.66 7.60 -51.93 -0.39 0.27 16 37 H 0.07 0.64 7.63 -51.93 -0.40 0.25 16 38 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.40 0.02 8.83 -40.82 -0.36 -0.35 16 41 H 0.40 0.99 8.93 -40.82 -0.36 0.63 16 42 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.15 3.00 6.22 -52.48 -0.33 2.68 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -38.09 363.58 -7.34 -45.43 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.61 Total: 4.48 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -2.94 Total: 5.59 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.44 Total: -53.71 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.04 Total: -24.17 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.09 -7.34 -45.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085587937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.800 kcal (2) G-P(sol) polarization free energy of solvation -38.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds