Wall clock time and date at job start Tue Mar 31 2020 13:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46495 * 119.99849 * 2 1 4 4 C 1.50707 * 109.46872 * 269.99687 * 3 2 1 5 5 H 1.08001 * 119.99891 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99804 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99291 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00226 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.47132 * 90.00011 * 8 6 4 10 10 H 1.48501 * 109.46907 * 210.00233 * 8 6 4 11 11 H 1.48502 * 109.47021 * 329.99755 * 8 6 4 12 12 C 1.34778 * 120.00053 * 179.97438 * 2 1 3 13 13 O 1.21592 * 120.00083 * 180.02562 * 12 2 1 14 14 N 1.34781 * 119.99918 * 0.02562 * 12 2 1 15 15 C 1.40150 * 119.99935 * 184.58721 * 14 12 2 16 16 C 1.38830 * 120.01435 * 144.90773 * 15 14 12 17 17 C 1.38100 * 119.98072 * 180.27664 * 16 15 14 18 18 C 1.38715 * 120.01889 * 359.49313 * 17 16 15 19 19 O 1.35971 * 119.98714 * 180.25601 * 18 17 16 20 20 C 1.42908 * 117.00106 * 0.24986 * 19 18 17 21 21 C 1.53002 * 109.47074 * 179.97438 * 20 19 18 22 22 C 1.50699 * 109.47100 * 179.97438 * 21 20 19 23 23 N 1.34776 * 120.00024 * 179.97438 * 22 21 20 24 24 O 1.21288 * 119.99520 * 0.02562 * 22 21 20 25 25 C 1.38718 * 120.02575 * 0.50779 * 18 17 16 26 26 C 1.38095 * 120.01177 * 359.74672 * 25 18 17 27 27 H 1.08997 * 109.47108 * 270.00025 * 1 2 3 28 28 H 1.08998 * 109.46777 * 30.00689 * 1 2 3 29 29 H 1.09002 * 109.46743 * 150.00195 * 1 2 3 30 30 H 1.08998 * 109.47303 * 29.99329 * 3 2 1 31 31 H 1.09002 * 109.47408 * 149.99632 * 3 2 1 32 32 H 0.97001 * 119.99355 * 179.97438 * 7 6 4 33 33 H 0.96996 * 119.99952 * 4.58870 * 14 12 2 34 34 H 1.07994 * 120.00733 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.98777 * 179.72353 * 17 16 15 36 36 H 1.08993 * 109.47160 * 300.00153 * 20 19 18 37 37 H 1.09000 * 109.46858 * 60.00463 * 20 19 18 38 38 H 1.09001 * 109.47166 * 299.99854 * 21 20 19 39 39 H 1.09005 * 109.47069 * 60.00141 * 21 20 19 40 40 H 0.96998 * 119.99983 * 0.02562 * 23 22 21 41 41 H 0.97001 * 119.99991 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.99262 * 179.73093 * 25 18 17 43 43 H 1.08004 * 120.00677 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2418 6 6 3.1269 2.8774 -1.6729 7 7 3.3465 3.2566 -2.9129 8 14 3.7338 3.9287 -0.2531 9 1 5.1069 3.5069 0.1236 10 1 3.7496 5.3553 -0.6652 11 1 2.8271 3.7597 0.9108 12 6 2.1389 -1.1672 0.0005 13 8 3.3549 -1.1672 0.0010 14 7 1.4650 -2.3344 0.0005 15 6 2.1624 -3.5462 0.0981 16 6 1.6093 -4.6115 0.7958 17 6 2.2996 -5.8033 0.8964 18 6 3.5406 -5.9398 0.2917 19 8 4.2173 -7.1152 0.3868 20 6 3.5884 -8.1686 1.1197 21 6 4.4929 -9.4026 1.1169 22 6 3.8300 -10.5131 1.8903 23 7 4.4467 -11.7042 2.0217 24 8 2.7409 -10.3352 2.3938 25 6 4.0937 -4.8757 -0.4055 26 6 3.4068 -3.6816 -0.5024 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5137 31 1 3.1499 1.1385 0.5139 32 1 3.8233 4.0825 -3.0901 33 1 0.4974 -2.3358 -0.0671 34 1 0.6418 -4.5065 1.2638 35 1 1.8715 -6.6306 1.4429 36 1 3.4176 -7.8451 2.1464 37 1 2.6348 -8.4165 0.6534 38 1 4.6633 -9.7259 0.0900 39 1 5.4468 -9.1549 1.5829 40 1 5.3175 -11.8466 1.6188 41 1 4.0198 -12.4192 2.5193 42 1 5.0618 -4.9811 -0.8724 43 1 3.8377 -2.8531 -1.0450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085587937.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:02 Heat of formation + Delta-G solvation = -95.675711 kcal Electronic energy + Delta-G solvation = -25787.732936 eV Core-core repulsion = 21832.668011 eV Total energy + Delta-G solvation = -3955.064925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75598 -40.94691 -40.31221 -38.56806 -36.65901 -35.55404 -34.70227 -34.54024 -32.81170 -31.91287 -30.66885 -29.18574 -27.36563 -25.91847 -24.67263 -23.69372 -22.75284 -21.41010 -20.81716 -19.46381 -19.18626 -19.12277 -18.28444 -18.10821 -17.49875 -17.36896 -16.80280 -16.68744 -16.44485 -15.82909 -15.73636 -15.37419 -15.08602 -14.69008 -14.52401 -14.49245 -14.36066 -14.03662 -13.89025 -13.67092 -13.65929 -13.21783 -13.06839 -12.79443 -12.75642 -12.41720 -12.05692 -11.96873 -11.77518 -11.73385 -11.16670 -11.10659 -10.82667 -10.78513 -10.65779 -9.97294 -9.47560 -8.64219 -8.32313 -6.37429 0.35625 0.37421 1.34401 1.39411 1.47260 1.59130 1.70776 1.94315 2.15986 2.32829 2.83318 2.89991 3.00807 3.05939 3.66629 3.88770 3.95981 3.98393 4.19707 4.23566 4.29160 4.40691 4.45616 4.60902 4.65072 4.71629 4.75882 4.78062 4.88680 4.92823 4.99344 5.05673 5.30624 5.36805 5.46048 5.53152 5.58664 5.88317 5.90588 6.01727 6.28004 6.40555 6.45935 6.63688 7.01672 7.24256 7.31815 7.60322 8.84697 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.030820 B = 0.002059 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.274289 B =13592.573773 C =14046.635272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.618 5.618 3 C 0.240 3.760 4 C -0.537 4.537 5 H 0.027 0.973 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.275 1.275 11 H -0.235 1.235 12 C 0.693 3.307 13 O -0.619 6.619 14 N -0.674 5.674 15 C 0.117 3.883 16 C -0.098 4.098 17 C -0.183 4.183 18 C 0.108 3.892 19 O -0.321 6.321 20 C 0.067 3.933 21 C -0.135 4.135 22 C 0.523 3.477 23 N -0.834 5.834 24 O -0.595 6.595 25 C -0.139 4.139 26 C -0.104 4.104 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.419 0.581 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.421 0.579 41 H 0.409 0.591 42 H 0.137 0.863 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -28.951 11.436 31.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.352 5.352 3 C 0.117 3.883 4 C -0.575 4.575 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.200 1.200 11 H -0.158 1.158 12 C 0.395 3.605 13 O -0.500 6.500 14 N -0.326 5.326 15 C 0.022 3.978 16 C -0.119 4.119 17 C -0.202 4.202 18 C 0.062 3.938 19 O -0.235 6.235 20 C -0.008 4.008 21 C -0.175 4.175 22 C 0.308 3.692 23 N -0.398 5.398 24 O -0.476 6.476 25 C -0.159 4.159 26 C -0.125 4.125 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.260 0.740 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.252 0.748 41 H 0.241 0.759 42 H 0.155 0.845 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.105 -28.494 11.512 30.803 hybrid contribution 0.196 0.539 -0.182 0.602 sum -1.909 -27.955 11.330 30.224 Atomic orbital electron populations 1.21943 0.77626 1.03923 1.03056 1.47106 1.08023 1.04453 1.75631 1.19289 0.92607 0.81119 0.95278 1.21592 1.36803 1.06675 0.92478 0.95488 1.25865 0.95284 0.98981 0.98680 1.70060 1.42727 1.24488 1.21322 0.85693 0.79578 0.77658 0.79862 1.20335 1.20034 1.15825 1.16113 0.85114 0.81217 0.78072 1.90845 1.13756 1.86460 1.58897 1.42524 1.10590 1.02264 1.77191 1.17696 0.94179 0.85941 0.99949 1.20906 1.01860 0.91500 0.97600 1.21277 0.94926 0.99593 1.04408 1.18889 0.91828 0.85890 0.97202 1.85956 1.46084 1.19976 1.71531 1.22524 0.96473 0.85628 0.96183 1.21447 1.00682 0.91317 1.04055 1.20547 0.84691 0.84667 0.79289 1.43682 1.24726 1.13852 1.57552 1.90776 1.23130 1.82892 1.50755 1.20341 1.01671 0.90887 1.02960 1.21105 0.95430 0.96936 0.99006 0.89990 0.90797 0.90026 0.92530 0.96167 0.92302 0.74040 0.82296 0.82769 0.91652 0.91345 0.85432 0.85623 0.74775 0.75938 0.84526 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.14 10.24 127.77 1.31 3.45 16 2 N -0.62 -25.48 2.86 -869.29 -2.48 -27.96 16 3 C 0.24 11.77 4.23 85.64 0.36 12.13 16 4 C -0.54 -31.94 9.94 25.60 0.25 -31.68 16 5 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 6 C 0.01 0.58 5.47 84.65 0.46 1.04 16 7 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 8 Si 0.95 44.73 27.47 68.60 1.88 46.62 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 12 C 0.69 29.70 8.12 179.05 1.45 31.15 16 13 O -0.62 -32.49 13.36 -4.01 -0.05 -32.54 16 14 N -0.67 -21.51 5.22 -317.05 -1.66 -23.17 16 15 C 0.12 3.67 6.30 38.10 0.24 3.91 16 16 C -0.10 -2.30 9.96 22.38 0.22 -2.08 16 17 C -0.18 -4.10 9.03 22.35 0.20 -3.90 16 18 C 0.11 2.74 6.69 22.50 0.15 2.89 16 19 O -0.32 -6.88 10.14 -93.23 -0.95 -7.83 16 20 C 0.07 1.08 4.03 71.98 0.29 1.37 16 21 C -0.14 -1.20 6.07 29.85 0.18 -1.02 16 22 C 0.52 6.16 8.10 87.66 0.71 6.87 16 23 N -0.83 -2.99 8.87 -173.53 -1.54 -4.53 16 24 O -0.59 -12.98 16.82 -3.05 -0.05 -13.04 16 25 C -0.14 -4.17 9.98 22.35 0.22 -3.95 16 26 C -0.10 -3.71 8.69 22.38 0.19 -3.52 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 29 H 0.08 1.78 6.30 -2.39 -0.02 1.77 16 30 H 0.06 2.50 7.13 -2.39 -0.02 2.48 16 31 H 0.02 1.07 6.85 -2.39 -0.02 1.05 16 32 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 33 H 0.42 9.82 6.52 -92.71 -0.60 9.22 16 34 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 35 H 0.15 2.70 6.29 -2.91 -0.02 2.68 16 36 H 0.07 1.12 7.60 -2.39 -0.02 1.10 16 37 H 0.07 1.13 7.63 -2.39 -0.02 1.11 16 38 H 0.13 0.64 8.14 -2.39 -0.02 0.63 16 39 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.42 -1.27 8.83 -92.71 -0.82 -2.08 16 41 H 0.41 1.11 8.93 -92.71 -0.83 0.28 16 42 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 43 H 0.11 4.92 6.22 -2.91 -0.02 4.90 16 Total: -1.00 -88.85 363.58 0.49 -88.37 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -1.23 Total: 17.49 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 6.26 Total: 16.68 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -5.38 Total: -115.75 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -1.05 Total: -53.41 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.62 kcal Total: -88.85 0.49 -88.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085587937.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.307 kcal (2) G-P(sol) polarization free energy of solvation -88.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds