Wall clock time and date at job start Tue Mar 31 2020 13:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34635 * 116.99624 * 2 1 4 4 O 1.21505 * 120.00479 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99872 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00290 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47310 * 179.97438 * 6 5 3 8 8 C 1.38277 * 119.92904 * 269.72406 * 7 6 5 9 9 C 1.38110 * 120.06976 * 179.76492 * 8 7 6 10 10 C 1.38870 * 119.92991 * 0.51010 * 9 8 7 11 11 N 1.39947 * 120.07115 * 179.72540 * 10 9 8 12 12 C 1.34769 * 119.99910 * 144.93068 * 11 10 9 13 13 O 1.21587 * 120.00441 * 4.58875 * 12 11 10 14 14 N 1.34785 * 119.99906 * 184.58349 * 12 11 10 15 15 C 1.46493 * 119.99834 * 0.02562 * 14 12 11 16 16 C 1.46496 * 119.99994 * 179.97438 * 14 12 11 17 17 C 1.50701 * 109.47014 * 90.00234 * 16 14 12 18 18 H 1.08000 * 119.99996 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00141 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00225 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99931 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46997 * 89.99921 * 21 19 17 23 23 H 1.48501 * 109.46732 * 209.99872 * 21 19 17 24 24 H 1.48505 * 109.46821 * 329.99472 * 21 19 17 25 25 C 1.38864 * 119.85673 * 359.73867 * 10 9 8 26 26 C 1.38112 * 119.93185 * 0.02562 * 25 10 9 27 27 H 1.09004 * 109.47150 * 299.99936 * 1 2 3 28 28 H 1.08999 * 109.47106 * 59.99617 * 1 2 3 29 29 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 30 30 H 0.97006 * 119.99867 * 359.97438 * 5 3 2 31 31 H 1.08997 * 109.47118 * 59.99223 * 6 5 3 32 32 H 1.09003 * 109.46818 * 299.99495 * 6 5 3 33 33 H 1.08004 * 119.96334 * 0.02562 * 8 7 6 34 34 H 1.07997 * 120.03901 * 180.22601 * 9 8 7 35 35 H 0.96998 * 119.99535 * 324.92522 * 11 10 9 36 36 H 1.09005 * 109.47341 * 89.99463 * 15 14 12 37 37 H 1.08999 * 109.46892 * 209.99685 * 15 14 12 38 38 H 1.09001 * 109.47320 * 329.99601 * 15 14 12 39 39 H 1.08997 * 109.47070 * 210.00388 * 16 14 12 40 40 H 1.08999 * 109.47475 * 330.00361 * 16 14 12 41 41 H 0.96998 * 120.00606 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.03412 * 179.97438 * 25 10 9 43 43 H 1.08006 * 119.96223 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0743 2.5756 0.0000 7 6 5.5683 2.3782 -0.0001 8 6 6.2530 2.2930 1.1982 9 6 7.6216 2.1072 1.2015 10 6 8.3114 2.0166 -0.0003 11 7 9.6989 1.8341 -0.0004 12 6 10.2795 1.0814 -0.9557 13 8 9.6099 0.6299 -1.8646 14 7 11.6025 0.8294 -0.9038 15 6 12.4093 1.3731 0.1915 16 6 12.2336 0.0107 -1.9419 17 6 12.7028 0.8986 -3.0656 18 1 12.5469 1.9659 -3.0116 19 6 13.3320 0.3484 -4.1622 20 7 13.7419 1.1232 -5.1426 21 14 13.6022 -1.4976 -4.2553 22 1 12.4354 -2.1360 -4.9157 23 1 14.8307 -1.7790 -5.0407 24 1 13.7555 -2.0452 -2.8834 25 6 7.6215 2.1077 -1.2020 26 6 6.2523 2.2886 -1.1985 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9375 0.4567 -0.0005 31 1 3.7817 3.1320 0.8904 32 1 3.7810 3.1331 -0.8895 33 1 5.7165 2.3676 2.1326 34 1 8.1554 2.0371 2.1377 35 1 10.2427 2.2494 0.6871 36 1 12.4264 0.6623 1.0178 37 1 13.4266 1.5478 -0.1587 38 1 11.9751 2.3137 0.5304 39 1 13.0860 -0.5200 -1.5180 40 1 11.5113 -0.7098 -2.3256 41 1 14.1849 0.7363 -5.9139 42 1 8.1552 2.0380 -2.1383 43 1 5.7152 2.3599 -2.1329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085600286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:48 Heat of formation + Delta-G solvation = -64.925867 kcal Electronic energy + Delta-G solvation = -25923.594333 eV Core-core repulsion = 21969.862821 eV Total energy + Delta-G solvation = -3953.731512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70805 -40.36844 -38.85266 -36.99037 -35.64916 -34.98231 -34.19234 -32.53801 -30.95486 -30.56243 -28.53462 -27.83829 -26.28074 -25.39729 -23.05500 -22.69142 -21.66405 -21.17753 -19.55547 -19.10593 -18.03823 -17.19982 -17.03464 -17.01066 -16.79918 -15.81570 -15.48074 -15.06101 -14.87950 -14.76510 -14.23720 -14.07273 -13.89974 -13.57908 -13.52397 -13.38121 -13.01676 -12.67720 -12.48324 -12.44604 -12.35086 -12.13915 -11.70744 -11.49751 -11.22327 -11.04419 -11.00653 -10.91061 -10.57139 -10.26908 -10.09716 -9.63564 -9.48338 -9.40102 -8.90480 -8.62802 -8.14310 -7.72481 -6.12463 -4.11828 1.08989 1.41510 2.09893 2.58085 3.00167 3.26863 3.32685 3.34892 3.51604 3.88296 4.15417 4.28232 4.36072 4.51695 4.76239 4.84587 4.91745 4.96409 5.13194 5.17298 5.19878 5.33387 5.35363 5.41450 5.60156 5.68311 5.74063 5.93440 5.95267 6.02477 6.10416 6.23202 6.32683 6.50970 6.57991 6.64810 6.81599 7.12062 7.15241 7.16343 7.38311 7.56307 8.07215 8.33884 8.42610 8.89755 9.03257 9.47210 11.00792 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002305 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.928944 B =12146.991672 C =12923.675925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.374 6.374 3 C 0.645 3.355 4 O -0.576 6.576 5 N -0.703 5.703 6 C 0.186 3.814 7 C -0.147 4.147 8 C -0.078 4.078 9 C -0.159 4.159 10 C 0.193 3.807 11 N -0.696 5.696 12 C 0.700 3.300 13 O -0.566 6.566 14 N -0.607 5.607 15 C 0.083 3.917 16 C 0.230 3.770 17 C -0.531 4.531 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.896 5.896 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.123 4.123 26 C -0.075 4.075 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.410 0.590 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.403 0.597 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.033 0.967 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.149 0.851 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.858 0.492 16.271 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.287 6.287 3 C 0.397 3.603 4 O -0.465 6.465 5 N -0.363 5.363 6 C 0.065 3.935 7 C -0.148 4.148 8 C -0.097 4.097 9 C -0.180 4.180 10 C 0.096 3.904 11 N -0.345 5.345 12 C 0.402 3.598 13 O -0.442 6.442 14 N -0.342 5.342 15 C -0.061 4.061 16 C 0.109 3.891 17 C -0.570 4.570 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.534 5.534 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.143 4.143 26 C -0.095 4.095 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.245 0.755 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.241 0.759 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.167 0.833 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.508 0.576 15.388 24.076 hybrid contribution 0.777 -0.947 0.177 1.237 sum -17.732 -0.371 15.564 23.597 Atomic orbital electron populations 1.23188 0.74409 1.03457 1.02708 1.86260 1.24213 1.31174 1.87081 1.18194 0.83512 0.82153 0.76414 1.90998 1.64710 1.34894 1.55929 1.44893 1.02751 1.10911 1.77740 1.20122 0.87479 0.82663 1.03284 1.19615 0.93977 1.07408 0.93827 1.20736 0.93362 0.98358 0.97253 1.20843 0.94343 1.06328 0.96503 1.17683 0.82620 0.96269 0.93848 1.42983 1.05584 1.53408 1.32528 1.15868 0.82664 0.79419 0.81873 1.90892 1.62229 1.56151 1.34945 1.47146 1.05005 1.54278 1.27721 1.21633 0.97818 0.97039 0.89625 1.19635 0.92632 0.90895 0.85900 1.21331 1.37911 0.95692 1.02032 0.90770 1.24856 0.94981 0.97988 0.95201 1.69893 1.39788 1.35319 1.08445 0.86846 0.78122 0.85981 0.78680 1.19849 1.21051 1.19075 1.21519 0.94268 0.99631 0.98898 1.20996 0.93852 0.97272 0.97348 0.91887 0.91833 0.87996 0.75476 0.90447 0.90333 0.85785 0.85732 0.75940 0.93446 0.89958 0.92828 0.94946 0.94325 0.92510 0.83346 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -3.78 10.62 -40.31 -0.43 -4.21 16 3 C 0.64 7.47 8.75 54.06 0.47 7.94 16 4 O -0.58 -8.23 16.13 -19.28 -0.31 -8.54 16 5 N -0.70 -6.85 5.55 -66.47 -0.37 -7.21 16 6 C 0.19 1.74 5.80 -5.19 -0.03 1.71 16 7 C -0.15 -1.49 5.25 -104.59 -0.55 -2.04 16 8 C -0.08 -0.75 9.69 -39.61 -0.38 -1.13 16 9 C -0.16 -1.71 9.97 -39.39 -0.39 -2.11 16 10 C 0.19 2.71 6.30 -83.69 -0.53 2.18 16 11 N -0.70 -10.33 5.22 -14.22 -0.07 -10.41 16 12 C 0.70 13.92 8.12 -86.92 -0.71 13.22 16 13 O -0.57 -13.48 13.36 5.29 0.07 -13.41 16 14 N -0.61 -12.00 2.86 -188.75 -0.54 -12.54 16 15 C 0.08 1.17 10.24 59.84 0.61 1.78 16 16 C 0.23 5.46 4.23 -5.19 -0.02 5.44 16 17 C -0.53 -14.92 9.94 -34.44 -0.34 -15.26 16 18 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 21 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 25 C -0.12 -1.86 8.70 -39.40 -0.34 -2.21 16 26 C -0.08 -0.91 9.69 -39.61 -0.38 -1.30 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.41 3.54 8.57 -40.82 -0.35 3.19 16 31 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.40 4.62 6.52 -40.82 -0.27 4.35 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 38 H 0.05 0.60 6.30 -51.93 -0.33 0.27 16 39 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 40 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.15 2.74 6.22 -52.48 -0.33 2.42 16 43 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -36.03 367.54 -7.43 -43.47 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.80 Total: 5.63 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -1.62 Total: 11.67 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.21 Total: -56.64 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.67 Total: -26.16 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.03 -7.43 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085600286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.459 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds