Wall clock time and date at job start Tue Mar 31 2020 13:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34635 * 116.99624 * 2 1 4 4 O 1.21505 * 120.00479 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99872 * 180.02562 * 3 2 1 6 6 C 1.46501 * 120.00290 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47310 * 179.97438 * 6 5 3 8 8 C 1.38277 * 119.92904 * 269.72406 * 7 6 5 9 9 C 1.38110 * 120.06976 * 179.76492 * 8 7 6 10 10 C 1.38870 * 119.92991 * 0.51010 * 9 8 7 11 11 N 1.39947 * 120.07115 * 179.72540 * 10 9 8 12 12 C 1.34769 * 119.99910 * 144.93068 * 11 10 9 13 13 O 1.21587 * 120.00441 * 4.58875 * 12 11 10 14 14 N 1.34785 * 119.99906 * 184.58349 * 12 11 10 15 15 C 1.46493 * 119.99834 * 0.02562 * 14 12 11 16 16 C 1.46496 * 119.99994 * 179.97438 * 14 12 11 17 17 C 1.50701 * 109.47014 * 90.00234 * 16 14 12 18 18 H 1.08000 * 119.99996 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00141 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00225 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99931 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46997 * 89.99921 * 21 19 17 23 23 H 1.48501 * 109.46732 * 209.99872 * 21 19 17 24 24 H 1.48505 * 109.46821 * 329.99472 * 21 19 17 25 25 C 1.38864 * 119.85673 * 359.73867 * 10 9 8 26 26 C 1.38112 * 119.93185 * 0.02562 * 25 10 9 27 27 H 1.09004 * 109.47150 * 299.99936 * 1 2 3 28 28 H 1.08999 * 109.47106 * 59.99617 * 1 2 3 29 29 H 1.08997 * 109.47223 * 179.97438 * 1 2 3 30 30 H 0.97006 * 119.99867 * 359.97438 * 5 3 2 31 31 H 1.08997 * 109.47118 * 59.99223 * 6 5 3 32 32 H 1.09003 * 109.46818 * 299.99495 * 6 5 3 33 33 H 1.08004 * 119.96334 * 0.02562 * 8 7 6 34 34 H 1.07997 * 120.03901 * 180.22601 * 9 8 7 35 35 H 0.96998 * 119.99535 * 324.92522 * 11 10 9 36 36 H 1.09005 * 109.47341 * 89.99463 * 15 14 12 37 37 H 1.08999 * 109.46892 * 209.99685 * 15 14 12 38 38 H 1.09001 * 109.47320 * 329.99601 * 15 14 12 39 39 H 1.08997 * 109.47070 * 210.00388 * 16 14 12 40 40 H 1.08999 * 109.47475 * 330.00361 * 16 14 12 41 41 H 0.96998 * 120.00606 * 179.97438 * 20 19 17 42 42 H 1.08003 * 120.03412 * 179.97438 * 25 10 9 43 43 H 1.08006 * 119.96223 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0743 2.5756 0.0000 7 6 5.5683 2.3782 -0.0001 8 6 6.2530 2.2930 1.1982 9 6 7.6216 2.1072 1.2015 10 6 8.3114 2.0166 -0.0003 11 7 9.6989 1.8341 -0.0004 12 6 10.2795 1.0814 -0.9557 13 8 9.6099 0.6299 -1.8646 14 7 11.6025 0.8294 -0.9038 15 6 12.4093 1.3731 0.1915 16 6 12.2336 0.0107 -1.9419 17 6 12.7028 0.8986 -3.0656 18 1 12.5469 1.9659 -3.0116 19 6 13.3320 0.3484 -4.1622 20 7 13.7419 1.1232 -5.1426 21 14 13.6022 -1.4976 -4.2553 22 1 12.4354 -2.1360 -4.9157 23 1 14.8307 -1.7790 -5.0407 24 1 13.7555 -2.0452 -2.8834 25 6 7.6215 2.1077 -1.2020 26 6 6.2523 2.2886 -1.1985 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9375 0.4567 -0.0005 31 1 3.7817 3.1320 0.8904 32 1 3.7810 3.1331 -0.8895 33 1 5.7165 2.3676 2.1326 34 1 8.1554 2.0371 2.1377 35 1 10.2427 2.2494 0.6871 36 1 12.4264 0.6623 1.0178 37 1 13.4266 1.5478 -0.1587 38 1 11.9751 2.3137 0.5304 39 1 13.0860 -0.5200 -1.5180 40 1 11.5113 -0.7098 -2.3256 41 1 14.1849 0.7363 -5.9139 42 1 8.1552 2.0380 -2.1383 43 1 5.7152 2.3599 -2.1329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085600286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:48 Heat of formation + Delta-G solvation = -92.109138 kcal Electronic energy + Delta-G solvation = -25924.773088 eV Core-core repulsion = 21969.862821 eV Total energy + Delta-G solvation = -3954.910267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76184 -41.44486 -39.96981 -37.84059 -36.89684 -36.37418 -35.36926 -34.57304 -31.89444 -31.66770 -30.22056 -28.57093 -27.51490 -26.48687 -24.56216 -23.87501 -22.63390 -22.17583 -20.94661 -19.92632 -19.34149 -19.14844 -18.32579 -17.99574 -17.60757 -16.94322 -16.73650 -16.50456 -16.21363 -15.66658 -15.53236 -15.10768 -15.02208 -14.78548 -14.58051 -14.43824 -14.36040 -14.07319 -13.68874 -13.59118 -13.49124 -13.27390 -12.95080 -12.85075 -12.59407 -12.40744 -12.16257 -12.03210 -11.86024 -11.78914 -11.74778 -11.37421 -10.95078 -10.82316 -10.28593 -9.85616 -9.56003 -8.99722 -8.33471 -6.38806 0.13903 0.48377 1.31148 1.33873 1.38555 1.46382 1.69612 1.70687 2.14152 2.31675 2.84376 2.98714 3.03453 3.41600 3.67705 3.90625 4.08822 4.25882 4.29082 4.35514 4.38371 4.45100 4.57699 4.60254 4.64745 4.72897 4.76014 4.78307 4.87821 4.93034 5.10657 5.13974 5.27204 5.37226 5.38087 5.44824 5.55342 5.58784 5.63981 5.99485 6.08007 6.26194 6.34280 6.62482 6.97982 7.22906 7.24619 7.56683 8.83471 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002305 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.928944 B =12146.991672 C =12923.675925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.378 6.378 3 C 0.643 3.357 4 O -0.607 6.607 5 N -0.695 5.695 6 C 0.189 3.811 7 C -0.130 4.130 8 C -0.066 4.066 9 C -0.142 4.142 10 C 0.165 3.835 11 N -0.677 5.677 12 C 0.693 3.307 13 O -0.617 6.617 14 N -0.617 5.617 15 C 0.076 3.924 16 C 0.240 3.760 17 C -0.536 4.536 18 H 0.026 0.974 19 C 0.009 3.991 20 N -0.946 5.946 21 Si 0.950 3.050 22 H -0.278 1.278 23 H -0.276 1.276 24 H -0.234 1.234 25 C -0.153 4.153 26 C -0.080 4.080 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.133 0.867 30 H 0.416 0.584 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.421 0.579 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.021 0.979 41 H 0.268 0.732 42 H 0.102 0.898 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.798 -0.804 19.847 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.292 6.292 3 C 0.396 3.604 4 O -0.499 6.499 5 N -0.355 5.355 6 C 0.068 3.932 7 C -0.132 4.132 8 C -0.085 4.085 9 C -0.163 4.163 10 C 0.069 3.931 11 N -0.327 5.327 12 C 0.394 3.606 13 O -0.497 6.497 14 N -0.352 5.352 15 C -0.066 4.066 16 C 0.117 3.883 17 C -0.575 4.575 18 H 0.045 0.955 19 C -0.189 4.189 20 N -0.586 5.586 21 Si 0.772 3.228 22 H -0.203 1.203 23 H -0.201 1.201 24 H -0.157 1.157 25 C -0.173 4.173 26 C -0.099 4.099 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.151 0.849 30 H 0.253 0.747 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.261 0.739 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.442 -0.692 19.050 27.228 hybrid contribution 0.924 -0.420 -0.910 1.363 sum -18.518 -1.113 18.141 25.947 Atomic orbital electron populations 1.23490 0.72788 1.05541 1.02636 1.86270 1.25851 1.30298 1.86755 1.18336 0.83815 0.82166 0.76078 1.90977 1.65446 1.35965 1.57492 1.44846 1.02340 1.11317 1.77002 1.20120 0.86574 0.82643 1.03884 1.19669 0.94350 1.05833 0.93325 1.21157 0.92984 0.96113 0.98241 1.21142 0.94763 1.04193 0.96162 1.17939 0.82164 0.98230 0.94742 1.42632 1.06250 1.52279 1.31578 1.16122 0.82594 0.79651 0.82192 1.90860 1.63465 1.58186 1.37159 1.47124 1.05568 1.54287 1.28179 1.21953 0.96673 0.99268 0.88707 1.19289 0.92845 0.90308 0.85857 1.21575 1.37701 0.94185 1.04016 0.95533 1.25877 0.94637 1.03784 0.94607 1.70053 1.41203 1.37940 1.09423 0.85694 0.77861 0.78901 0.80334 1.20343 1.20127 1.15713 1.21273 0.95569 1.02589 0.97901 1.21017 0.92725 0.97429 0.98720 0.91739 0.92188 0.84872 0.74740 0.88985 0.90737 0.82108 0.82411 0.73864 0.89860 0.90869 0.89954 0.92503 0.96134 0.92302 0.87978 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 10.56 113.37 1.20 1.80 16 2 O -0.38 -7.06 10.62 -55.45 -0.59 -7.65 16 3 C 0.64 13.98 8.75 129.79 1.14 15.11 16 4 O -0.61 -16.70 16.13 19.83 0.32 -16.38 16 5 N -0.70 -12.18 5.55 -594.61 -3.30 -15.49 16 6 C 0.19 3.12 5.80 85.63 0.50 3.61 16 7 C -0.13 -2.37 5.25 -19.85 -0.10 -2.47 16 8 C -0.07 -1.00 9.69 22.25 0.22 -0.79 16 9 C -0.14 -2.57 9.97 22.39 0.22 -2.34 16 10 C 0.16 4.52 6.30 38.15 0.24 4.76 16 11 N -0.68 -19.63 5.22 -317.18 -1.65 -21.28 16 12 C 0.69 28.13 8.12 179.05 1.45 29.59 16 13 O -0.62 -31.04 13.36 -3.99 -0.05 -31.09 16 14 N -0.62 -24.36 2.86 -869.33 -2.48 -26.85 16 15 C 0.08 1.99 10.24 127.77 1.31 3.30 16 16 C 0.24 11.44 4.23 85.63 0.36 11.80 16 17 C -0.54 -31.30 9.94 25.60 0.25 -31.05 16 18 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 19 C 0.01 0.52 5.47 84.65 0.46 0.98 16 20 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 21 Si 0.95 43.98 27.47 68.60 1.88 45.86 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.23 -9.57 6.54 99.48 0.65 -8.92 16 25 C -0.15 -4.87 8.70 22.39 0.19 -4.67 16 26 C -0.08 -1.95 9.69 22.25 0.22 -1.74 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.42 6.33 8.57 -92.70 -0.79 5.54 16 31 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 32 H 0.07 1.33 8.08 -2.39 -0.02 1.32 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.42 8.69 6.52 -92.71 -0.60 8.09 16 36 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 38 H 0.08 1.64 6.30 -2.39 -0.02 1.63 16 39 H 0.06 2.44 7.13 -2.39 -0.02 2.42 16 40 H 0.02 1.06 6.85 -2.39 -0.02 1.04 16 41 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 42 H 0.10 4.21 6.22 -2.91 -0.02 4.19 16 43 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -84.77 367.54 1.68 -83.09 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.40 Total: 21.38 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 7.66 Total: 27.89 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -7.14 Total: -123.11 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: -0.32 Total: -55.12 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -84.77 1.68 -83.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085600286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.014 kcal (2) G-P(sol) polarization free energy of solvation -84.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds