Wall clock time and date at job start Tue Mar 31 2020 12:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46496 * 120.00223 * 270.00023 * 3 2 1 5 5 C 1.50697 * 109.47335 * 270.00056 * 4 3 2 6 6 H 1.07998 * 119.99876 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00362 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99555 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00168 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46847 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47000 * 119.99527 * 9 7 5 12 12 H 1.48498 * 109.46859 * 239.99795 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 N 1.46506 * 109.47289 * 179.97438 * 15 13 3 17 17 C 1.39668 * 120.00181 * 180.02562 * 16 15 13 18 18 C 1.38931 * 120.07527 * 359.97438 * 17 16 15 19 19 C 1.38084 * 119.92468 * 180.02562 * 18 17 16 20 20 N 1.48006 * 119.95953 * 180.02562 * 19 18 17 21 21 O 1.21800 * 120.00534 * 0.02562 * 20 19 18 22 22 O 1.21806 * 119.99528 * 179.97438 * 20 19 18 23 23 C 1.38303 * 120.07652 * 0.02562 * 19 18 17 24 24 C 1.38265 * 120.14761 * 359.97438 * 23 19 18 25 25 C 1.38125 * 120.07763 * 359.72073 * 24 23 19 26 26 C 1.50697 * 120.04150 * 180.27748 * 25 24 23 27 27 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 28 28 H 1.09001 * 109.47274 * 60.00246 * 1 2 3 29 29 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 31 31 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 32 32 H 1.09002 * 109.47248 * 29.99793 * 4 3 2 33 33 H 1.09004 * 109.47206 * 149.99350 * 4 3 2 34 34 H 0.97000 * 119.99408 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47438 * 59.99564 * 15 13 3 36 36 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 37 37 H 0.97001 * 119.99251 * 0.02562 * 16 15 13 38 38 H 1.08000 * 120.03868 * 359.97438 * 18 17 16 39 39 H 1.08001 * 119.92447 * 180.02562 * 23 19 18 40 40 H 1.08004 * 119.96181 * 180.02562 * 24 23 19 41 41 H 1.09004 * 109.47213 * 270.28006 * 26 25 24 42 42 H 1.09000 * 109.46982 * 30.27672 * 26 25 24 43 43 H 1.09000 * 109.47410 * 150.28019 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 3.3495 3.1265 -3.6174 9 14 5.9140 2.0973 -3.4163 10 1 6.6015 1.2420 -2.4158 11 1 5.9219 1.4187 -4.7371 12 1 6.6212 3.3986 -3.5239 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5859 17 6 2.1558 1.7640 4.9027 18 6 1.7006 0.4765 5.1583 19 6 1.5487 0.0456 6.4614 20 7 1.0644 -1.3260 6.7346 21 8 0.8005 -2.0742 5.8104 22 8 0.9307 -1.7070 7.8838 23 6 1.8487 0.8942 7.5114 24 6 2.3019 2.1762 7.2606 25 6 2.4621 2.6115 5.9595 26 6 2.9621 4.0068 5.6871 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 3.6757 3.5170 -4.4433 35 1 2.6226 0.4185 2.5299 36 1 0.9443 1.0114 2.5302 37 1 2.6276 3.1025 3.4086 38 1 1.4650 -0.1863 4.3388 39 1 1.7294 0.5545 8.5297 40 1 2.5357 2.8362 8.0829 41 1 2.1153 4.6902 5.6230 42 1 3.6219 4.3207 6.4959 43 1 3.5107 4.0187 4.7453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088522584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:58 Heat of formation + Delta-G solvation = -13.865730 kcal Electronic energy + Delta-G solvation = -26745.681485 eV Core-core repulsion = 22794.164107 eV Total energy + Delta-G solvation = -3951.517378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 5.21 seconds Orbital eigenvalues (eV) -42.24944 -40.30136 -39.25645 -36.64900 -35.96418 -35.32680 -33.54142 -32.90581 -30.57198 -30.22123 -28.80534 -28.07716 -26.33121 -25.11882 -23.24790 -23.10426 -21.99424 -21.76443 -19.73300 -18.80858 -18.53655 -17.59851 -17.11404 -16.66704 -16.46446 -15.95054 -15.65268 -15.41460 -15.28163 -14.55413 -14.39564 -14.24743 -13.91183 -13.56133 -13.38813 -12.94061 -12.80185 -12.63183 -12.25972 -12.17638 -12.14396 -11.87675 -11.73349 -11.59685 -11.33338 -11.23758 -11.21950 -11.01451 -10.92093 -10.69415 -10.60650 -10.25444 -9.75641 -9.56071 -9.27779 -8.54546 -7.92156 -7.85754 -6.15597 -4.20918 -0.27671 0.91609 1.29008 1.31459 2.92574 3.05129 3.14544 3.22524 3.30564 3.34306 3.74553 4.19673 4.34751 4.36791 4.51825 4.62822 4.68136 4.84535 5.06674 5.11574 5.17202 5.19431 5.21198 5.27556 5.30281 5.45524 5.50148 5.60506 5.65158 5.70069 5.88451 5.92753 6.01305 6.11297 6.31870 6.36730 6.71602 6.92282 7.25812 7.34235 7.41635 7.56732 7.79785 8.09418 8.16254 8.66322 8.85785 9.44693 10.92602 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.002957 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.229615 B = 9465.409130 C =10341.680915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.502 3.498 14 O -0.539 6.539 15 C 0.094 3.906 16 N -0.718 5.718 17 C 0.229 3.771 18 C -0.144 4.144 19 C 0.001 3.999 20 N 0.030 4.970 21 O -0.162 6.162 22 O -0.166 6.166 23 C -0.117 4.117 24 C -0.072 4.072 25 C -0.109 4.109 26 C -0.119 4.119 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.418 0.582 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.660 -3.320 19.192 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.287 3.713 14 O -0.418 6.418 15 C -0.034 4.034 16 N -0.350 5.350 17 C 0.122 3.878 18 C -0.168 4.168 19 C -0.083 4.083 20 N 0.548 4.452 21 O -0.378 6.378 22 O -0.381 6.381 23 C -0.139 4.139 24 C -0.091 4.091 25 C -0.115 4.115 26 C -0.175 4.175 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.260 0.740 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.262 -2.065 18.634 19.226 hybrid contribution 0.899 -0.370 -0.518 1.102 sum -3.363 -2.435 18.115 18.585 Atomic orbital electron populations 1.22227 0.96371 1.01881 1.02373 1.21526 0.93823 0.83757 1.03177 1.48238 1.62736 1.13428 1.07488 1.19344 0.96560 0.93622 0.77746 1.21434 0.96766 1.32163 1.06462 0.92372 1.24937 0.97968 0.94804 0.96327 1.69938 1.35655 1.33265 1.14324 0.86429 0.84423 0.78092 0.78411 1.19799 1.20851 1.20842 1.20018 0.79163 0.87049 0.85082 1.90666 1.46406 1.17963 1.86716 1.21373 1.02076 0.93766 0.86172 1.44643 1.71753 1.17959 1.00613 1.17312 0.93852 0.91340 0.85335 1.20334 1.04814 0.96170 0.95509 1.20697 1.08878 0.82939 0.95753 1.43667 0.98022 1.03048 1.00434 1.94542 1.53164 1.52157 1.37939 1.94516 1.56853 1.79867 1.06836 1.20734 1.00888 0.93407 0.98849 1.20780 0.97811 0.94470 0.96067 1.19861 1.02306 0.97250 0.92043 1.20797 1.01663 0.91723 1.03331 0.93117 0.91866 0.91704 0.89397 0.91548 0.94660 0.93789 0.92656 0.89203 0.89224 0.74001 0.83134 0.83491 0.83731 0.90223 0.90465 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.10 1.46 5.93 -4.05 -0.02 1.43 16 3 N -0.59 -11.29 2.46 -175.07 -0.43 -11.72 16 4 C 0.25 6.05 5.16 -5.20 -0.03 6.02 16 5 C -0.53 -14.35 9.39 -34.44 -0.32 -14.67 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 9 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.50 9.27 7.74 -10.98 -0.09 9.18 16 14 O -0.54 -12.07 15.25 5.56 0.08 -11.99 16 15 C 0.09 1.23 3.95 -5.19 -0.02 1.21 16 16 N -0.72 -8.94 5.60 -59.80 -0.34 -9.28 16 17 C 0.23 2.52 6.63 -83.79 -0.56 1.97 16 18 C -0.14 -1.62 8.82 -39.38 -0.35 -1.97 16 19 C 0.00 0.01 6.85 -79.99 -0.55 -0.54 16 20 N 0.03 0.39 4.45 33.94 0.15 0.55 16 21 O -0.16 -2.30 18.44 -29.46 -0.54 -2.84 16 22 O -0.17 -2.25 18.44 -29.46 -0.54 -2.79 16 23 C -0.12 -1.08 9.55 -39.55 -0.38 -1.46 16 24 C -0.07 -0.56 9.70 -39.61 -0.38 -0.94 16 25 C -0.11 -1.00 5.90 -104.42 -0.62 -1.61 16 26 C -0.12 -0.90 9.57 36.00 0.34 -0.55 16 27 H 0.05 0.58 7.22 -51.93 -0.38 0.20 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 32 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.09 1.06 7.21 -51.93 -0.37 0.69 16 36 H 0.09 1.00 6.99 -51.93 -0.36 0.64 16 37 H 0.42 5.57 5.44 -40.82 -0.22 5.35 16 38 H 0.15 1.62 6.28 -52.49 -0.33 1.29 16 39 H 0.15 1.14 7.60 -52.49 -0.40 0.74 16 40 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 43 H 0.07 0.64 6.55 -51.93 -0.34 0.30 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -32.08 367.67 -8.66 -40.74 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.62 Total: 2.56 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.68 Total: -2.00 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.12 Total: -45.41 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.00 Total: -17.62 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.08 -8.66 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088522584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.874 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.21 seconds