Wall clock time and date at job start Tue Mar 31 2020 12:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46496 * 120.00223 * 270.00023 * 3 2 1 5 5 C 1.50697 * 109.47335 * 270.00056 * 4 3 2 6 6 H 1.07998 * 119.99876 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00362 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99555 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00168 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46847 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47000 * 119.99527 * 9 7 5 12 12 H 1.48498 * 109.46859 * 239.99795 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 N 1.46506 * 109.47289 * 179.97438 * 15 13 3 17 17 C 1.39668 * 120.00181 * 180.02562 * 16 15 13 18 18 C 1.38931 * 120.07527 * 359.97438 * 17 16 15 19 19 C 1.38084 * 119.92468 * 180.02562 * 18 17 16 20 20 N 1.48006 * 119.95953 * 180.02562 * 19 18 17 21 21 O 1.21800 * 120.00534 * 0.02562 * 20 19 18 22 22 O 1.21806 * 119.99528 * 179.97438 * 20 19 18 23 23 C 1.38303 * 120.07652 * 0.02562 * 19 18 17 24 24 C 1.38265 * 120.14761 * 359.97438 * 23 19 18 25 25 C 1.38125 * 120.07763 * 359.72073 * 24 23 19 26 26 C 1.50697 * 120.04150 * 180.27748 * 25 24 23 27 27 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 28 28 H 1.09001 * 109.47274 * 60.00246 * 1 2 3 29 29 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 31 31 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 32 32 H 1.09002 * 109.47248 * 29.99793 * 4 3 2 33 33 H 1.09004 * 109.47206 * 149.99350 * 4 3 2 34 34 H 0.97000 * 119.99408 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47438 * 59.99564 * 15 13 3 36 36 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 37 37 H 0.97001 * 119.99251 * 0.02562 * 16 15 13 38 38 H 1.08000 * 120.03868 * 359.97438 * 18 17 16 39 39 H 1.08001 * 119.92447 * 180.02562 * 23 19 18 40 40 H 1.08004 * 119.96181 * 180.02562 * 24 23 19 41 41 H 1.09004 * 109.47213 * 270.28006 * 26 25 24 42 42 H 1.09000 * 109.46982 * 30.27672 * 26 25 24 43 43 H 1.09000 * 109.47410 * 150.28019 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 3.3495 3.1265 -3.6174 9 14 5.9140 2.0973 -3.4163 10 1 6.6015 1.2420 -2.4158 11 1 5.9219 1.4187 -4.7371 12 1 6.6212 3.3986 -3.5239 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5859 17 6 2.1558 1.7640 4.9027 18 6 1.7006 0.4765 5.1583 19 6 1.5487 0.0456 6.4614 20 7 1.0644 -1.3260 6.7346 21 8 0.8005 -2.0742 5.8104 22 8 0.9307 -1.7070 7.8838 23 6 1.8487 0.8942 7.5114 24 6 2.3019 2.1762 7.2606 25 6 2.4621 2.6115 5.9595 26 6 2.9621 4.0068 5.6871 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 3.6757 3.5170 -4.4433 35 1 2.6226 0.4185 2.5299 36 1 0.9443 1.0114 2.5302 37 1 2.6276 3.1025 3.4086 38 1 1.4650 -0.1863 4.3388 39 1 1.7294 0.5545 8.5297 40 1 2.5357 2.8362 8.0829 41 1 2.1153 4.6902 5.6230 42 1 3.6219 4.3207 6.4959 43 1 3.5107 4.0187 4.7453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088522584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:55 Heat of formation + Delta-G solvation = -32.676177 kcal Electronic energy + Delta-G solvation = -26746.497167 eV Core-core repulsion = 22794.164107 eV Total energy + Delta-G solvation = -3952.333060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.19989 -41.30761 -40.51301 -37.64160 -37.25182 -36.50889 -34.95121 -34.26208 -31.80406 -31.33500 -29.70571 -29.41217 -27.76642 -25.96572 -24.93767 -24.24704 -23.04275 -22.59643 -20.71577 -19.99581 -19.64410 -18.68011 -18.56058 -18.19881 -17.79099 -17.00844 -16.72788 -16.57777 -16.46611 -16.05978 -15.38065 -15.08541 -14.97873 -14.74538 -14.60028 -14.22128 -13.97078 -13.60829 -13.43470 -13.32389 -13.25596 -13.08341 -12.93440 -12.74971 -12.70624 -12.53567 -12.43515 -12.25689 -12.21657 -12.17448 -11.97191 -11.72819 -11.51875 -10.82002 -10.67731 -10.26845 -9.55165 -8.73187 -8.25978 -6.40423 -1.18607 0.18736 0.40640 0.42964 1.35219 1.36774 1.48238 1.62344 1.86577 2.33484 2.38556 2.48028 3.04435 3.42545 3.50566 3.64440 3.76818 3.90607 3.99551 4.09909 4.16797 4.24428 4.39558 4.44523 4.52929 4.60530 4.71308 4.76270 4.89041 4.90710 4.94839 5.02832 5.07795 5.17025 5.19659 5.25054 5.36146 5.49188 5.52870 5.76564 5.91177 6.01659 6.43028 6.54937 6.63229 6.71229 7.18401 7.34127 8.81430 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.002957 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.229615 B = 9465.409130 C =10341.680915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.271 1.271 12 H -0.282 1.282 13 C 0.494 3.506 14 O -0.587 6.587 15 C 0.111 3.889 16 N -0.728 5.728 17 C 0.215 3.785 18 C -0.151 4.151 19 C -0.019 4.019 20 N 0.031 4.969 21 O -0.191 6.191 22 O -0.171 6.171 23 C -0.107 4.107 24 C -0.061 4.061 25 C -0.103 4.103 26 C -0.119 4.119 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.024 0.976 33 H 0.000 1.000 34 H 0.267 0.733 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.413 0.587 38 H 0.151 0.849 39 H 0.164 0.836 40 H 0.184 0.816 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 -3.937 21.549 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.325 5.325 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.282 3.718 14 O -0.468 6.468 15 C -0.016 4.016 16 N -0.360 5.360 17 C 0.109 3.891 18 C -0.175 4.175 19 C -0.102 4.102 20 N 0.546 4.454 21 O -0.402 6.402 22 O -0.387 6.387 23 C -0.129 4.129 24 C -0.080 4.080 25 C -0.108 4.108 26 C -0.176 4.176 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.042 0.958 33 H 0.018 0.982 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.254 0.746 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.201 0.799 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.658 -2.761 21.001 21.495 hybrid contribution 0.686 -0.094 -1.144 1.337 sum -2.972 -2.855 19.857 20.280 Atomic orbital electron populations 1.22168 0.94424 1.03707 1.01784 1.21838 0.95418 0.81097 1.04384 1.48213 1.63053 1.15144 1.06101 1.18749 0.95367 0.91645 0.80113 1.21722 0.97819 1.31992 1.06595 0.92767 1.25827 1.02251 0.94475 0.96453 1.70052 1.37652 1.34165 1.14822 0.85385 0.79151 0.77987 0.78397 1.19154 1.19582 1.20764 1.20921 0.77748 0.86657 0.86470 1.90633 1.48344 1.20250 1.87617 1.21257 1.03812 0.93383 0.83194 1.44584 1.72846 1.17625 1.00992 1.17424 0.94949 0.91711 0.85034 1.20348 1.05188 0.96338 0.95648 1.20868 1.10567 0.82184 0.96613 1.43940 0.97634 1.03708 1.00141 1.94530 1.54511 1.53105 1.38018 1.94490 1.56865 1.80335 1.06981 1.21102 0.99203 0.93447 0.99101 1.21189 0.96182 0.94160 0.96459 1.20191 1.00810 0.97552 0.92197 1.20865 1.02226 0.90990 1.03499 0.92126 0.94047 0.88591 0.90502 0.88003 0.95781 0.98161 0.92387 0.87418 0.86868 0.74631 0.83119 0.81806 0.79853 0.89449 0.87968 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.24 71.98 0.74 -3.00 16 2 C 0.09 2.65 5.93 86.38 0.51 3.16 16 3 N -0.59 -23.29 2.46 -826.18 -2.03 -25.32 16 4 C 0.26 13.53 5.16 85.63 0.44 13.98 16 5 C -0.54 -30.23 9.39 25.60 0.24 -29.99 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.51 5.46 84.65 0.46 0.98 16 8 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 9 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 C 0.49 18.51 7.74 87.66 0.68 19.19 16 14 O -0.59 -27.36 15.25 -3.03 -0.05 -27.41 16 15 C 0.11 2.78 3.95 85.63 0.34 3.11 16 16 N -0.73 -17.47 5.60 -343.11 -1.92 -19.40 16 17 C 0.21 4.34 6.63 38.22 0.25 4.59 16 18 C -0.15 -3.14 8.82 22.40 0.20 -2.94 16 19 C -0.02 -0.40 6.85 36.36 0.25 -0.15 16 20 N 0.03 0.80 4.45 -46.52 -0.21 0.59 16 21 O -0.19 -5.33 18.44 18.89 0.35 -4.98 16 22 O -0.17 -4.42 18.44 18.88 0.35 -4.08 16 23 C -0.11 -1.63 9.55 22.29 0.21 -1.42 16 24 C -0.06 -0.70 9.70 22.25 0.22 -0.48 16 25 C -0.10 -1.59 5.90 -19.74 -0.12 -1.70 16 26 C -0.12 -1.51 9.57 71.24 0.68 -0.83 16 27 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 28 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.10 2.13 6.44 -2.39 -0.02 2.11 16 32 H 0.02 1.27 8.07 -2.39 -0.02 1.26 16 33 H 0.00 0.02 7.42 -2.38 -0.02 0.00 16 34 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.11 2.32 7.21 -2.39 -0.02 2.30 16 36 H 0.11 2.30 6.99 -2.38 -0.02 2.28 16 37 H 0.41 11.00 5.44 -92.71 -0.50 10.49 16 38 H 0.15 3.02 6.28 -2.91 -0.02 3.00 16 39 H 0.16 1.95 7.60 -2.91 -0.02 1.92 16 40 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 41 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.10 0.79 8.09 -2.39 -0.02 0.77 16 43 H 0.06 0.95 6.55 -2.39 -0.02 0.93 16 Total: -1.00 -73.23 367.67 4.45 -68.78 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.54 Total: 15.94 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.10 Total: 4.49 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -3.87 Total: -98.67 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: 0.65 Total: -36.46 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -73.23 4.45 -68.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088522584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.106 kcal (2) G-P(sol) polarization free energy of solvation -73.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds