Wall clock time and date at job start Tue Mar 31 2020 12:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47158 * 2 1 4 4 C 1.46496 * 120.00400 * 270.00161 * 3 2 1 5 5 C 1.50701 * 109.47439 * 270.00190 * 4 3 2 6 6 H 1.08001 * 119.99569 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00024 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00395 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99794 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46694 * 89.99987 * 9 7 5 11 11 H 1.48497 * 109.46992 * 209.99574 * 9 7 5 12 12 H 1.48497 * 109.47353 * 330.00116 * 9 7 5 13 13 C 1.34774 * 119.99655 * 90.00114 * 3 2 1 14 14 O 1.21289 * 120.00134 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00443 * 0.02562 * 13 3 2 16 16 N 1.46493 * 109.47751 * 179.97438 * 15 13 3 17 17 C 1.39679 * 120.00512 * 179.97438 * 16 15 13 18 18 C 1.38933 * 120.06816 * 359.97438 * 17 16 15 19 19 C 1.38087 * 119.92122 * 179.72401 * 18 17 16 20 20 C 1.38307 * 120.07192 * 0.02562 * 19 18 17 21 21 C 1.38262 * 120.15384 * 359.95235 * 20 19 18 22 22 N 1.48008 * 119.96340 * 180.02562 * 21 20 19 23 23 O 1.21801 * 120.00039 * 6.55059 * 22 21 20 24 24 O 1.21801 * 119.99693 * 186.54847 * 22 21 20 25 25 C 1.38119 * 120.07409 * 0.04542 * 21 20 19 26 26 C 1.50707 * 120.03795 * 180.02562 * 25 21 20 27 27 H 1.09000 * 109.47268 * 59.99465 * 1 2 3 28 28 H 1.09000 * 109.47426 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46848 * 299.99944 * 1 2 3 30 30 H 1.09003 * 109.46756 * 240.00789 * 2 1 3 31 31 H 1.09000 * 109.47268 * 120.00535 * 2 1 3 32 32 H 1.09009 * 109.47044 * 30.00373 * 4 3 2 33 33 H 1.09004 * 109.47168 * 150.00252 * 4 3 2 34 34 H 0.96998 * 120.00030 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47289 * 59.99125 * 15 13 3 36 36 H 1.09007 * 109.46857 * 300.00082 * 15 13 3 37 37 H 0.97002 * 120.00044 * 359.97438 * 16 15 13 38 38 H 1.07999 * 120.03929 * 359.69890 * 18 17 16 39 39 H 1.07993 * 119.96364 * 179.97438 * 19 18 17 40 40 H 1.08001 * 119.92201 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.46892 * 276.75462 * 26 25 21 42 42 H 1.08989 * 109.47223 * 36.75312 * 26 25 21 43 43 H 1.09005 * 109.47202 * 156.75806 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3907 -2.8774 8 7 3.3493 3.1268 -3.6175 9 14 5.9138 2.0977 -3.4164 10 1 5.9774 0.8771 -4.2597 11 1 6.3927 3.2655 -4.1988 12 1 6.7737 1.9176 -2.2192 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3102 2.2031 3.5859 17 6 2.1550 1.7641 4.9028 18 6 1.6989 0.4769 5.1583 19 6 1.5521 0.0441 6.4613 20 6 1.8581 0.8907 7.5114 21 6 2.3126 2.1722 7.2606 22 7 2.6393 3.0744 8.3875 23 8 2.6228 2.6524 9.5300 24 8 2.9248 4.2387 8.1723 25 6 2.4618 2.6114 5.9596 26 6 2.9579 4.0082 5.6872 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0956 3.1411 -1.1382 34 1 3.6756 3.5180 -4.4430 35 1 2.6228 0.4185 2.5298 36 1 0.9445 1.0113 2.5302 37 1 2.6284 3.1022 3.4087 38 1 1.4591 -0.1843 4.3387 39 1 1.1972 -0.9561 6.6607 40 1 1.7419 0.5499 8.5296 41 1 2.1241 4.7078 5.7459 42 1 3.7107 4.2773 6.4280 43 1 3.3976 4.0497 4.6907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088522711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:11 Heat of formation + Delta-G solvation = -6.245749 kcal Electronic energy + Delta-G solvation = -26710.985251 eV Core-core repulsion = 22759.798300 eV Total energy + Delta-G solvation = -3951.186951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32190 -40.24908 -39.25389 -36.74188 -35.98147 -35.34946 -33.30140 -32.93014 -30.96134 -30.30352 -28.40583 -27.62659 -26.47287 -25.70491 -23.24107 -22.95453 -22.14527 -21.73478 -19.14375 -19.01332 -18.53905 -17.67316 -17.33383 -16.68846 -16.53880 -16.14481 -15.67000 -15.36611 -15.28627 -14.53106 -14.31271 -13.92899 -13.89199 -13.62599 -13.43298 -12.99712 -12.95783 -12.56012 -12.39524 -12.24957 -12.18428 -11.89065 -11.75185 -11.44554 -11.35508 -11.19991 -11.06164 -10.96480 -10.72152 -10.69306 -10.62752 -10.27070 -9.79639 -9.58440 -9.30013 -8.55754 -7.94242 -7.83138 -6.16955 -4.22583 -0.23913 0.90682 1.31184 1.32164 2.93386 3.02990 3.16587 3.21679 3.29386 3.33073 3.71602 4.22854 4.33508 4.39860 4.44178 4.64130 4.80014 4.81259 4.97263 5.09435 5.12425 5.18052 5.22425 5.29031 5.42588 5.47188 5.57161 5.61994 5.72527 5.82293 5.85411 5.92449 5.94035 6.04438 6.29329 6.43795 6.71974 6.91032 7.23752 7.31619 7.41255 7.59645 7.77968 8.07386 8.13172 8.64272 8.83536 9.43120 10.91219 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002736 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.941646 B =10231.240662 C =11113.303082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.589 5.589 4 C 0.246 3.754 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.500 3.500 14 O -0.537 6.537 15 C 0.098 3.902 16 N -0.720 5.720 17 C 0.227 3.773 18 C -0.153 4.153 19 C -0.072 4.072 20 C -0.122 4.122 21 C 0.001 3.999 22 N 0.032 4.968 23 O -0.171 6.171 24 O -0.158 6.158 25 C -0.095 4.095 26 C -0.126 4.126 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.265 0.735 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.417 0.583 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 -8.996 16.982 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.320 5.320 4 C 0.127 3.873 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.285 3.715 14 O -0.414 6.414 15 C -0.029 4.029 16 N -0.351 5.351 17 C 0.119 3.881 18 C -0.177 4.177 19 C -0.091 4.091 20 C -0.144 4.144 21 C -0.083 4.083 22 N 0.549 4.451 23 O -0.384 6.384 24 O -0.373 6.373 25 C -0.101 4.101 26 C -0.183 4.183 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.259 0.741 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.642 -8.809 16.033 19.462 hybrid contribution 1.104 0.226 -0.295 1.165 sum -5.538 -8.583 15.737 18.762 Atomic orbital electron populations 1.22233 0.96444 1.01724 1.02482 1.21506 0.93741 0.83882 1.03054 1.48239 1.62897 1.13363 1.07520 1.19346 0.96552 0.93667 0.77700 1.21383 0.96761 1.32316 1.06482 0.92450 1.24932 0.97968 0.94763 0.96332 1.69921 1.35780 1.33112 1.14340 0.86484 0.84451 0.77783 0.78642 1.20561 1.20992 1.19891 1.20052 0.79232 0.87110 0.85102 1.90686 1.46100 1.17970 1.86671 1.21325 1.01872 0.93683 0.86064 1.44686 1.71753 1.18101 1.00605 1.17358 0.94018 0.92245 0.84461 1.21097 1.03708 0.94708 0.98163 1.20851 0.97867 0.99578 0.90832 1.20716 1.01116 0.90929 1.01641 1.20571 1.10520 0.91857 0.85307 1.43618 0.97842 1.01426 1.02257 1.94517 1.56659 1.80304 1.06960 1.94483 1.50585 1.01703 1.90561 1.19172 1.03020 0.98543 0.89398 1.21129 1.02884 0.90776 1.03484 0.91806 0.91852 0.93095 0.89442 0.91678 0.94687 0.93754 0.92567 0.89277 0.89300 0.74107 0.84211 0.83800 0.83588 0.89669 0.88436 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.24 37.16 0.38 -1.50 16 2 C 0.10 1.37 5.93 -4.04 -0.02 1.34 16 3 N -0.59 -10.97 2.46 -175.05 -0.43 -11.40 16 4 C 0.25 5.97 5.16 -5.20 -0.03 5.94 16 5 C -0.53 -14.24 9.39 -34.44 -0.32 -14.57 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 9 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.50 9.04 7.74 -10.99 -0.09 8.95 16 14 O -0.54 -12.06 15.25 5.55 0.08 -11.97 16 15 C 0.10 1.20 3.94 -5.20 -0.02 1.18 16 16 N -0.72 -9.01 5.61 -59.81 -0.34 -9.35 16 17 C 0.23 2.51 6.63 -83.78 -0.56 1.95 16 18 C -0.15 -1.32 9.31 -39.38 -0.37 -1.68 16 19 C -0.07 -0.54 10.04 -39.61 -0.40 -0.93 16 20 C -0.12 -1.14 9.55 -39.55 -0.38 -1.52 16 21 C 0.00 0.02 6.83 -79.99 -0.55 -0.53 16 22 N 0.03 0.43 4.45 33.94 0.15 0.58 16 23 O -0.17 -2.36 18.46 -29.46 -0.54 -2.90 16 24 O -0.16 -2.21 15.36 -29.46 -0.45 -2.66 16 25 C -0.10 -1.12 5.90 -104.42 -0.62 -1.73 16 26 C -0.13 -1.45 8.40 36.01 0.30 -1.15 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.52 7.22 -51.93 -0.38 0.14 16 30 H 0.09 1.25 8.07 -51.93 -0.42 0.83 16 31 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 32 H 0.04 0.86 8.07 -51.92 -0.42 0.44 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.09 0.92 7.22 -51.93 -0.37 0.55 16 36 H 0.09 0.87 6.99 -51.93 -0.36 0.50 16 37 H 0.42 5.88 5.29 -40.82 -0.22 5.67 16 38 H 0.14 0.91 6.74 -52.49 -0.35 0.55 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 40 H 0.15 1.16 7.62 -52.49 -0.40 0.76 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.15 5.86 -51.93 -0.30 0.84 16 43 H 0.07 0.80 6.21 -51.93 -0.32 0.48 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -32.15 362.01 -8.61 -40.76 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.50 Total: 2.86 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.75 Total: -2.62 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.12 Total: -45.01 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.91 Total: -17.53 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.15 -8.61 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088522711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.517 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds