Wall clock time and date at job start Tue Mar 31 2020 12:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47158 * 2 1 4 4 C 1.46496 * 120.00400 * 270.00161 * 3 2 1 5 5 C 1.50701 * 109.47439 * 270.00190 * 4 3 2 6 6 H 1.08001 * 119.99569 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00024 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00395 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99794 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46694 * 89.99987 * 9 7 5 11 11 H 1.48497 * 109.46992 * 209.99574 * 9 7 5 12 12 H 1.48497 * 109.47353 * 330.00116 * 9 7 5 13 13 C 1.34774 * 119.99655 * 90.00114 * 3 2 1 14 14 O 1.21289 * 120.00134 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00443 * 0.02562 * 13 3 2 16 16 N 1.46493 * 109.47751 * 179.97438 * 15 13 3 17 17 C 1.39679 * 120.00512 * 179.97438 * 16 15 13 18 18 C 1.38933 * 120.06816 * 359.97438 * 17 16 15 19 19 C 1.38087 * 119.92122 * 179.72401 * 18 17 16 20 20 C 1.38307 * 120.07192 * 0.02562 * 19 18 17 21 21 C 1.38262 * 120.15384 * 359.95235 * 20 19 18 22 22 N 1.48008 * 119.96340 * 180.02562 * 21 20 19 23 23 O 1.21801 * 120.00039 * 6.55059 * 22 21 20 24 24 O 1.21801 * 119.99693 * 186.54847 * 22 21 20 25 25 C 1.38119 * 120.07409 * 0.04542 * 21 20 19 26 26 C 1.50707 * 120.03795 * 180.02562 * 25 21 20 27 27 H 1.09000 * 109.47268 * 59.99465 * 1 2 3 28 28 H 1.09000 * 109.47426 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46848 * 299.99944 * 1 2 3 30 30 H 1.09003 * 109.46756 * 240.00789 * 2 1 3 31 31 H 1.09000 * 109.47268 * 120.00535 * 2 1 3 32 32 H 1.09009 * 109.47044 * 30.00373 * 4 3 2 33 33 H 1.09004 * 109.47168 * 150.00252 * 4 3 2 34 34 H 0.96998 * 120.00030 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47289 * 59.99125 * 15 13 3 36 36 H 1.09007 * 109.46857 * 300.00082 * 15 13 3 37 37 H 0.97002 * 120.00044 * 359.97438 * 16 15 13 38 38 H 1.07999 * 120.03929 * 359.69890 * 18 17 16 39 39 H 1.07993 * 119.96364 * 179.97438 * 19 18 17 40 40 H 1.08001 * 119.92201 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.46892 * 276.75462 * 26 25 21 42 42 H 1.08989 * 109.47223 * 36.75312 * 26 25 21 43 43 H 1.09005 * 109.47202 * 156.75806 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3907 -2.8774 8 7 3.3493 3.1268 -3.6175 9 14 5.9138 2.0977 -3.4164 10 1 5.9774 0.8771 -4.2597 11 1 6.3927 3.2655 -4.1988 12 1 6.7737 1.9176 -2.2192 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3102 2.2031 3.5859 17 6 2.1550 1.7641 4.9028 18 6 1.6989 0.4769 5.1583 19 6 1.5521 0.0441 6.4613 20 6 1.8581 0.8907 7.5114 21 6 2.3126 2.1722 7.2606 22 7 2.6393 3.0744 8.3875 23 8 2.6228 2.6524 9.5300 24 8 2.9248 4.2387 8.1723 25 6 2.4618 2.6114 5.9596 26 6 2.9579 4.0082 5.6872 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0956 3.1411 -1.1382 34 1 3.6756 3.5180 -4.4430 35 1 2.6228 0.4185 2.5298 36 1 0.9445 1.0113 2.5302 37 1 2.6284 3.1022 3.4087 38 1 1.4591 -0.1843 4.3387 39 1 1.1972 -0.9561 6.6607 40 1 1.7419 0.5499 8.5296 41 1 2.1241 4.7078 5.7459 42 1 3.7107 4.2773 6.4280 43 1 3.3976 4.0497 4.6907 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088522711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:05 Heat of formation + Delta-G solvation = -25.845299 kcal Electronic energy + Delta-G solvation = -26711.835152 eV Core-core repulsion = 22759.798300 eV Total energy + Delta-G solvation = -3952.036851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -43.27977 -41.25152 -40.44933 -37.74103 -37.22041 -36.48278 -34.93475 -34.05311 -31.99044 -31.52446 -29.72229 -28.63833 -27.69298 -26.73657 -24.85421 -24.12913 -23.06655 -22.60344 -20.30541 -19.97212 -19.55264 -18.72607 -18.63677 -18.37151 -17.72642 -17.02652 -16.88979 -16.65203 -16.32817 -16.05076 -15.35253 -15.03393 -14.73770 -14.61111 -14.54659 -14.28490 -13.98634 -13.86591 -13.58358 -13.31518 -13.25041 -13.11620 -13.02981 -12.72691 -12.66925 -12.50621 -12.38614 -12.22644 -12.19157 -11.92757 -11.75013 -11.67435 -11.48105 -10.78290 -10.66647 -10.30455 -9.52170 -8.66313 -8.25519 -6.40021 -1.15491 0.19002 0.43459 0.44094 1.34957 1.37865 1.47370 1.67361 1.91452 2.34053 2.44153 2.50993 3.04998 3.47356 3.50339 3.63022 3.72920 4.03375 4.07917 4.15420 4.23499 4.30103 4.36545 4.44664 4.50945 4.54915 4.66236 4.85590 4.92332 4.98350 4.99922 5.02843 5.06258 5.18015 5.19384 5.24543 5.42055 5.53347 5.57076 5.78970 6.00281 6.02381 6.39235 6.56308 6.65784 6.73611 7.22116 7.36669 8.81578 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.002736 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.941646 B =10231.240662 C =11113.303082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.489 3.511 14 O -0.594 6.594 15 C 0.115 3.885 16 N -0.734 5.734 17 C 0.214 3.786 18 C -0.138 4.138 19 C -0.057 4.057 20 C -0.117 4.117 21 C -0.018 4.018 22 N 0.032 4.968 23 O -0.177 6.177 24 O -0.189 6.189 25 C -0.115 4.115 26 C -0.122 4.122 27 H 0.034 0.966 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.024 0.976 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.405 0.595 38 H 0.174 0.826 39 H 0.189 0.811 40 H 0.161 0.839 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.244 -13.156 18.191 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.326 5.326 4 C 0.140 3.860 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.277 3.723 14 O -0.475 6.475 15 C -0.012 4.012 16 N -0.366 5.366 17 C 0.108 3.892 18 C -0.161 4.161 19 C -0.076 4.076 20 C -0.138 4.138 21 C -0.103 4.103 22 N 0.544 4.456 23 O -0.391 6.391 24 O -0.398 6.398 25 C -0.122 4.122 26 C -0.179 4.179 27 H 0.053 0.947 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.042 0.958 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.245 0.755 38 H 0.191 0.809 39 H 0.206 0.794 40 H 0.179 0.821 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.248 -13.000 17.273 22.802 hybrid contribution 1.214 1.429 -0.635 1.980 sum -6.034 -11.571 16.638 21.146 Atomic orbital electron populations 1.22181 0.94404 1.03777 1.01773 1.21885 0.95401 0.80828 1.04641 1.48219 1.63136 1.15325 1.05896 1.18726 0.95310 0.91573 0.80381 1.21701 0.97880 1.31961 1.06480 0.92640 1.25831 1.02199 0.94508 0.96559 1.70043 1.37762 1.34167 1.14841 0.85449 0.79192 0.78142 0.78233 1.18773 1.20963 1.19766 1.21131 0.77689 0.86679 0.86796 1.90660 1.48427 1.20752 1.87693 1.21341 1.04536 0.93177 0.82120 1.44712 1.72785 1.17777 1.01300 1.17510 0.95077 0.93333 0.83315 1.21569 1.01195 0.93503 0.99798 1.21362 0.95873 1.00803 0.89512 1.21137 0.99573 0.89824 1.03305 1.20799 1.12391 0.92574 0.84485 1.43947 0.97391 1.01561 1.02677 1.94480 1.56597 1.80213 1.07806 1.94482 1.52018 1.02623 1.90706 1.19198 1.04377 0.98598 0.90003 1.21020 1.02515 0.91606 1.02714 0.94672 0.88294 0.91728 0.90829 0.87100 0.95762 0.98552 0.92435 0.86196 0.85708 0.75543 0.80899 0.79356 0.82124 0.90075 0.89344 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.24 71.98 0.74 -2.34 16 2 C 0.09 2.26 5.93 86.38 0.51 2.77 16 3 N -0.60 -21.99 2.46 -826.14 -2.03 -24.02 16 4 C 0.26 13.24 5.16 85.63 0.44 13.69 16 5 C -0.54 -29.75 9.39 25.60 0.24 -29.51 16 6 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.46 5.46 84.65 0.46 0.92 16 8 N -0.93 -54.85 13.29 21.45 0.28 -54.57 16 9 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 C 0.49 17.44 7.74 87.66 0.68 18.12 16 14 O -0.59 -27.84 15.25 -3.06 -0.05 -27.89 16 15 C 0.11 2.40 3.94 85.63 0.34 2.74 16 16 N -0.73 -17.17 5.61 -343.14 -1.92 -19.09 16 17 C 0.21 4.17 6.63 38.21 0.25 4.43 16 18 C -0.14 -1.62 9.31 22.40 0.21 -1.41 16 19 C -0.06 -0.52 10.04 22.25 0.22 -0.30 16 20 C -0.12 -1.77 9.55 22.29 0.21 -1.56 16 21 C -0.02 -0.41 6.83 36.35 0.25 -0.17 16 22 N 0.03 0.88 4.45 -46.52 -0.21 0.67 16 23 O -0.18 -4.81 18.46 18.88 0.35 -4.47 16 24 O -0.19 -5.56 15.36 18.88 0.29 -5.27 16 25 C -0.12 -2.64 5.90 -19.73 -0.12 -2.76 16 26 C -0.12 -2.99 8.40 71.24 0.60 -2.39 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.05 7.22 -2.39 -0.02 1.03 16 30 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 31 H 0.11 1.65 6.44 -2.39 -0.02 1.64 16 32 H 0.02 1.26 8.07 -2.38 -0.02 1.24 16 33 H 0.00 -0.22 7.42 -2.38 -0.02 -0.24 16 34 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.12 1.81 7.22 -2.39 -0.02 1.79 16 36 H 0.13 1.74 6.99 -2.38 -0.02 1.72 16 37 H 0.41 11.67 5.29 -92.71 -0.49 11.18 16 38 H 0.17 0.90 6.74 -2.91 -0.02 0.88 16 39 H 0.19 0.16 8.06 -2.91 -0.02 0.13 16 40 H 0.16 1.95 7.62 -2.91 -0.02 1.93 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 42 H 0.09 2.27 5.86 -2.39 -0.01 2.26 16 43 H 0.06 1.60 6.21 -2.38 -0.01 1.58 16 Total: -1.00 -76.88 362.01 4.34 -72.54 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.56 Total: 14.20 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.04 Total: 2.24 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -3.88 Total: -97.01 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: 0.59 Total: -37.62 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -76.88 4.34 -72.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088522711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.695 kcal (2) G-P(sol) polarization free energy of solvation -76.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds